Clone Sequence Records
BO10430.3prime Sequence
836 bp (834 high quality bases) assembled on 2006-04-19
> BO10430.3prime
ATGGTCTAGAAAGCTTGCGTTTTGCACGCTGAGTGCCAAAGTATCGCCGC
TGACACTGGCCACACTCTCCTGGCCGCCGGATGTTCCGGATGTGGCATGC
TTCTCGCGGATGCCCAGCCACGGCAGACGGCGCTCCAGCTCCAGACGATA
CTTGGGATGACTGGTGGCATAGACCCAGGGATCCAGACAGGACACCGACT
TGCAGGCCAGGCACGGAAGCATTGAGACGAAGGGCGTGATTAGCTGCTGC
TCCCCGAAGCATCCGATAAGTGCCACCACGGAGTAGGGTGTCCAGGCCAG
AATGAAGAGCATGTATATTATGAGGGCCGCCTTGGCGATCCGGAGTTCCA
CACTCATGTTATCCGCATTGGCGTTGGCCGACAGCGACTTCACGTTCATT
TTCTTGGCCTGCTCGGCCAGCATCTTCTCGTGCACGCGGACGTGGGTGAA
GAGCTTGTAGTAGGACACCAGGATCATGGTCATCGGTATCACGTAGGACC
ACACGAAAATCGTGCGCACAAACAGTCGGTTTTCGTCCGTGTTGGTCAGG
TAATCGAAGGAGCAGGTGGTCAGGAAGCCCTCCGGCTGGTAACGTCCCCA
GATCTGGAACAATGGCAGCACGGAGAACGGAGTGGCCCACAACCAGGTGA
AGAGTATCAGCAGTACAATCTGTCCGTAGCTCAAACGTCCGTCTATTGGA
TTGGATATTGTCTTATAGCGATCGAATGCTATGAAGGCATTCGTTATGGA
GGCTCCCATCCCGGAGATGCCTCCGTTCAAAGCGTATATATCGCAGCCCA
GATCTCCGCCCACTATATAGCCAACTGTGGCGTTGA
BO10430.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5279-PA | 1149 | Rh5-RA | 329..1146 | 836..19 | 4090 | 100 | Minus |
CG9668-PA | 1137 | Rh4-RA | 757..789 | 414..382 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-RB | 1572 | CG5279-RB | 625..1442 | 836..19 | 4090 | 100 | Minus |
Rh5-RA | 1347 | CG5279-RA | 400..1217 | 836..19 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12009139..12009702 | 582..19 | 2820 | 100 | Minus |
2L | 23513712 | 2L | 12008835..12009089 | 836..582 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:55:41 has no hits.
BO10430.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:38 Download gff for
BO10430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-PA | 330..1149 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:33 Download gff for
BO10430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5279-PA | 330..1149 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:49 Download gff for
BO10430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 401..1220 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:03 Download gff for
BO10430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 401..1220 | 15..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:03 Download gff for
BO10430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12008836..12009089 | 582..835 | 100 | -> | Minus |
2L | 12009140..12009705 | 15..581 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:49 Download gff for
BO10430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12008836..12009089 | 582..835 | 100 | -> | Minus |
arm_2L | 12009140..12009705 | 15..581 | 99 | | Minus |
BO10430.5prime Sequence
885 bp (832 high quality bases) assembled on 2006-04-19
> BO10430.5prime
GAAGTTATCAGTCGACATGCACATCAACGGCCCAAGTGGGCCACAGGCCT
ATGTGAACGATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGA
TATCCGGCGGAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCG
TGAGGCACCTATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCC
TCATGCTGTCGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCG
ACTTCGAAATCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGC
CATTTTCGATCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACG
CCACAGTTGGCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCT
TTGAACGGAGGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCAT
AGCATTCGATCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGA
GCTACGGACAGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACT
CCGTTCTCCGTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGA
GGGCTTCCTGACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAA
ACCGACTGTTTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATG
ACCATGATCCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCA
CGAGAAGATGCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGT
CGGCCAACGCCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAG
GCGGCCCTCATAATATACATGCTCTTCATTCTGGG
BO10430.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5279-PA | 1149 | Rh5-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
CG9668-PA | 1137 | Rh4-RA | 757..789 | 767..799 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-RB | 1572 | CG5279-RB | 297..1164 | 17..884 | 4340 | 100 | Plus |
Rh5-RA | 1347 | CG5279-RA | 72..939 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12008743..12009089 | 253..599 | 1735 | 100 | Plus |
2L | 23513712 | 2L | 12009139..12009424 | 599..884 | 1430 | 100 | Plus |
2L | 23513712 | 2L | 12008449..12008684 | 17..252 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:25:03 has no hits.
BO10430.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:39 Download gff for
BO10430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-PA | 1..868 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:34 Download gff for
BO10430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5279-PA | 1..868 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:57 Download gff for
BO10430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 68..939 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:08:56 Download gff for
BO10430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 68..939 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:08:56 Download gff for
BO10430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12008445..12008684 | 9..252 | 98 | -> | Plus |
2L | 12008743..12009089 | 253..599 | 100 | -> | Plus |
2L | 12009140..12009424 | 600..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:57 Download gff for
BO10430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12008445..12008684 | 9..252 | 98 | -> | Plus |
arm_2L | 12008743..12009089 | 253..599 | 100 | -> | Plus |
arm_2L | 12009140..12009424 | 600..885 | 99 | | Plus |
BO10430.complete Sequence
1180 bp (1180 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631750
> BO10430.complete
GAAGTTATCAGTCGACATGCACATCAACGGCCCAAGTGGGCCACAGGCCT
ATGTGAACGATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGA
TATCCGGCGGAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCG
TGAGGCACCTATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCC
TCATGCTGTCGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCG
ACTTCGAAATCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGC
CATTTTCGATCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACG
CCACAGTTGGCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCT
TTGAACGGAGGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCAT
AGCATTCGATCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGA
GCTACGGACAGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACT
CCGTTCTCCGTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGA
GGGCTTCCTGACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAA
ACCGACTGTTTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATG
ACCATGATCCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCA
CGAGAAGATGCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGT
CGGCCAACGCCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAG
GCGGCCCTCATAATATACATGCTCTTCATTCTGGCCTGGACACCCTACTC
CGTGGTGGCACTTATCGGATGCTTCGGGGAGCAGCAGCTAATCACGCCCT
TCGTCTCAATGCTTCCGTGCCTGGCCTGCAAGTCGGTGTCCTGTCTGGAT
CCCTGGGTCTATGCCACCAGTCATCCCAAGTATCGTCTGGAGCTGGAGCG
CCGTCTGCCGTGGCTGGGCATCCGCGAGAAGCATGCCACATCCGGAACAT
CCGGCGGCCAGGAGAGTGTGGCCAGTGTCAGCGGCGATACTTTGGCACTC
AGCGTGCAAAACGCAAGCTTTCTAGACCAT
BO10430.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-RB | 1149 | CG5279-PB | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Rh5-RA | 1149 | CG5279-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-RB | 1572 | CG5279-RB | 297..1442 | 17..1162 | 5730 | 100 | Plus |
Rh5-RA | 1347 | CG5279-RA | 72..1217 | 17..1162 | 5730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12009139..12009702 | 599..1162 | 2820 | 100 | Plus |
2L | 23513712 | 2L | 12008743..12009089 | 253..599 | 1735 | 100 | Plus |
2L | 23513712 | 2L | 12008449..12008684 | 17..252 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:25:09 has no hits.
BO10430.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:58 Download gff for
BO10430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 1..1149 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:36 Download gff for
BO10430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 70..1222 | 9..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:33 Download gff for
BO10430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 72..1217 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:58 Download gff for
BO10430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 70..1222 | 9..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:05 Download gff for
BO10430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 72..1217 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:05 Download gff for
BO10430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12008449..12008684 | 17..252 | 100 | -> | Plus |
2L | 12008743..12009089 | 253..599 | 100 | -> | Plus |
2L | 12009140..12009702 | 600..1164 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:33 Download gff for
BO10430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12008449..12008684 | 17..252 | 100 | -> | Plus |
arm_2L | 12008743..12009089 | 253..599 | 100 | -> | Plus |
arm_2L | 12009140..12009702 | 600..1164 | 99 | | Plus |
BO10430.pep Sequence
Translation from 16 to 1180
> BO10430.pep
MHINGPSGPQAYVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIY
YHAGFYIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLF
MCTNMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRY
KTISNPIDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTT
CSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLA
EQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALI
GCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLELERRLPWL
GIREKHATSGTSGGQESVASVSGDTLALSVQNASFLDH
BO10430.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-PB | 382 | CG5279-PB | 1..382 | 1..382 | 2024 | 100 | Plus |
Rh5-PA | 382 | CG5279-PA | 1..382 | 1..382 | 2024 | 100 | Plus |
Rh4-PA | 378 | CG9668-PA | 18..357 | 16..355 | 879 | 48.2 | Plus |
Rh3-PA | 383 | CG10888-PA | 31..376 | 25..366 | 839 | 45.4 | Plus |
Rh2-PA | 381 | CG16740-PA | 16..352 | 7..348 | 526 | 37.8 | Plus |