Clone BO10430 Report

Search the DGRC for BO10430

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptRh5-RA
Protein status:BO10430.pep: validated full length
Sequenced Size:1180

Clone Sequence Records

BO10430.3prime Sequence

836 bp (834 high quality bases) assembled on 2006-04-19

> BO10430.3prime
ATGGTCTAGAAAGCTTGCGTTTTGCACGCTGAGTGCCAAAGTATCGCCGC
TGACACTGGCCACACTCTCCTGGCCGCCGGATGTTCCGGATGTGGCATGC
TTCTCGCGGATGCCCAGCCACGGCAGACGGCGCTCCAGCTCCAGACGATA
CTTGGGATGACTGGTGGCATAGACCCAGGGATCCAGACAGGACACCGACT
TGCAGGCCAGGCACGGAAGCATTGAGACGAAGGGCGTGATTAGCTGCTGC
TCCCCGAAGCATCCGATAAGTGCCACCACGGAGTAGGGTGTCCAGGCCAG
AATGAAGAGCATGTATATTATGAGGGCCGCCTTGGCGATCCGGAGTTCCA
CACTCATGTTATCCGCATTGGCGTTGGCCGACAGCGACTTCACGTTCATT
TTCTTGGCCTGCTCGGCCAGCATCTTCTCGTGCACGCGGACGTGGGTGAA
GAGCTTGTAGTAGGACACCAGGATCATGGTCATCGGTATCACGTAGGACC
ACACGAAAATCGTGCGCACAAACAGTCGGTTTTCGTCCGTGTTGGTCAGG
TAATCGAAGGAGCAGGTGGTCAGGAAGCCCTCCGGCTGGTAACGTCCCCA
GATCTGGAACAATGGCAGCACGGAGAACGGAGTGGCCCACAACCAGGTGA
AGAGTATCAGCAGTACAATCTGTCCGTAGCTCAAACGTCCGTCTATTGGA
TTGGATATTGTCTTATAGCGATCGAATGCTATGAAGGCATTCGTTATGGA
GGCTCCCATCCCGGAGATGCCTCCGTTCAAAGCGTATATATCGCAGCCCA
GATCTCCGCCCACTATATAGCCAACTGTGGCGTTGA

BO10430.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5279-PA 1149 Rh5-RA 329..1146 836..19 4090 100 Minus
CG9668-PA 1137 Rh4-RA 757..789 414..382 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-RB 1572 CG5279-RB 625..1442 836..19 4090 100 Minus
Rh5-RA 1347 CG5279-RA 400..1217 836..19 4090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12009139..12009702 582..19 2820 100 Minus
2L 23513712 2L 12008835..12009089 836..582 1275 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:55:41 has no hits.

BO10430.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:38 Download gff for BO10430.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-PA 330..1149 15..835 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:33 Download gff for BO10430.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5279-PA 330..1149 15..835 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:49 Download gff for BO10430.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 401..1220 15..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:03 Download gff for BO10430.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 401..1220 15..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:03 Download gff for BO10430.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12008836..12009089 582..835 100 -> Minus
2L 12009140..12009705 15..581 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:49 Download gff for BO10430.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12008836..12009089 582..835 100 -> Minus
arm_2L 12009140..12009705 15..581 99   Minus

BO10430.5prime Sequence

885 bp (832 high quality bases) assembled on 2006-04-19

> BO10430.5prime
GAAGTTATCAGTCGACATGCACATCAACGGCCCAAGTGGGCCACAGGCCT
ATGTGAACGATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGA
TATCCGGCGGAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCG
TGAGGCACCTATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCC
TCATGCTGTCGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCG
ACTTCGAAATCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGC
CATTTTCGATCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACG
CCACAGTTGGCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCT
TTGAACGGAGGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCAT
AGCATTCGATCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGA
GCTACGGACAGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACT
CCGTTCTCCGTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGA
GGGCTTCCTGACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAA
ACCGACTGTTTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATG
ACCATGATCCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCA
CGAGAAGATGCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGT
CGGCCAACGCCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAG
GCGGCCCTCATAATATACATGCTCTTCATTCTGGG

BO10430.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5279-PA 1149 Rh5-RA 1..868 17..884 4340 100 Plus
CG9668-PA 1137 Rh4-RA 757..789 767..799 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-RB 1572 CG5279-RB 297..1164 17..884 4340 100 Plus
Rh5-RA 1347 CG5279-RA 72..939 17..884 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12008743..12009089 253..599 1735 100 Plus
2L 23513712 2L 12009139..12009424 599..884 1430 100 Plus
2L 23513712 2L 12008449..12008684 17..252 1180 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:25:03 has no hits.

BO10430.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:39 Download gff for BO10430.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-PA 1..868 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:34 Download gff for BO10430.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5279-PA 1..868 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:57 Download gff for BO10430.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 68..939 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:08:56 Download gff for BO10430.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 68..939 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:08:56 Download gff for BO10430.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12008445..12008684 9..252 98 -> Plus
2L 12008743..12009089 253..599 100 -> Plus
2L 12009140..12009424 600..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:57 Download gff for BO10430.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12008445..12008684 9..252 98 -> Plus
arm_2L 12008743..12009089 253..599 100 -> Plus
arm_2L 12009140..12009424 600..885 99   Plus

BO10430.complete Sequence

1180 bp (1180 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631750

> BO10430.complete
GAAGTTATCAGTCGACATGCACATCAACGGCCCAAGTGGGCCACAGGCCT
ATGTGAACGATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGA
TATCCGGCGGAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCG
TGAGGCACCTATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCC
TCATGCTGTCGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCG
ACTTCGAAATCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGC
CATTTTCGATCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACG
CCACAGTTGGCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCT
TTGAACGGAGGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCAT
AGCATTCGATCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGA
GCTACGGACAGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACT
CCGTTCTCCGTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGA
GGGCTTCCTGACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAA
ACCGACTGTTTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATG
ACCATGATCCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCA
CGAGAAGATGCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGT
CGGCCAACGCCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAG
GCGGCCCTCATAATATACATGCTCTTCATTCTGGCCTGGACACCCTACTC
CGTGGTGGCACTTATCGGATGCTTCGGGGAGCAGCAGCTAATCACGCCCT
TCGTCTCAATGCTTCCGTGCCTGGCCTGCAAGTCGGTGTCCTGTCTGGAT
CCCTGGGTCTATGCCACCAGTCATCCCAAGTATCGTCTGGAGCTGGAGCG
CCGTCTGCCGTGGCTGGGCATCCGCGAGAAGCATGCCACATCCGGAACAT
CCGGCGGCCAGGAGAGTGTGGCCAGTGTCAGCGGCGATACTTTGGCACTC
AGCGTGCAAAACGCAAGCTTTCTAGACCAT

BO10430.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-RB 1149 CG5279-PB 1..1146 17..1162 5730 100 Plus
Rh5-RA 1149 CG5279-PA 1..1146 17..1162 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-RB 1572 CG5279-RB 297..1442 17..1162 5730 100 Plus
Rh5-RA 1347 CG5279-RA 72..1217 17..1162 5730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12009139..12009702 599..1162 2820 100 Plus
2L 23513712 2L 12008743..12009089 253..599 1735 100 Plus
2L 23513712 2L 12008449..12008684 17..252 1180 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:25:09 has no hits.

BO10430.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:58 Download gff for BO10430.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 1..1149 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:36 Download gff for BO10430.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 70..1222 9..1166 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:33 Download gff for BO10430.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 72..1217 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:58 Download gff for BO10430.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 70..1222 9..1166 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:05 Download gff for BO10430.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 72..1217 17..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:05 Download gff for BO10430.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12008449..12008684 17..252 100 -> Plus
2L 12008743..12009089 253..599 100 -> Plus
2L 12009140..12009702 600..1164 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:33 Download gff for BO10430.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12008449..12008684 17..252 100 -> Plus
arm_2L 12008743..12009089 253..599 100 -> Plus
arm_2L 12009140..12009702 600..1164 99   Plus

BO10430.pep Sequence

Translation from 16 to 1180

> BO10430.pep
MHINGPSGPQAYVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIY
YHAGFYIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLF
MCTNMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRY
KTISNPIDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTT
CSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLA
EQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALI
GCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLELERRLPWL
GIREKHATSGTSGGQESVASVSGDTLALSVQNASFLDH

BO10430.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-PB 382 CG5279-PB 1..382 1..382 2024 100 Plus
Rh5-PA 382 CG5279-PA 1..382 1..382 2024 100 Plus
Rh4-PA 378 CG9668-PA 18..357 16..355 879 48.2 Plus
Rh3-PA 383 CG10888-PA 31..376 25..366 839 45.4 Plus
Rh2-PA 381 CG16740-PA 16..352 7..348 526 37.8 Plus