Clone Sequence Records
BO10431.3prime Sequence
916 bp (863 high quality bases) assembled on 2006-04-19
> BO10431.3prime
ATGGTCTAGAAAGCTTGCCTGGAACAGTTGGTCCTTCTGGCGGAGCAGTG
ATTTGAGATCCCGGGCCAGCTGGTCGTGTTCATCCTCCAGGCGATCGAGC
ATCTTGCTAAGGACTTTATGCGTGACGATCCCGTGACAGTTGCTCCTGCA
CAGTTCCATGATCTTGGCCAGGTGGACCATTCGCTCCCGCTGCAACTCCT
CCTGCAGCTCAATCTGGTGGCGCATCTGCTGTAGATCGTCCTCGTCGTAC
GATAGCTTCTGGGCCAAGATGCTTCTGCGATAAGTAAGCCAGGTGTTCTG
TAGACATGCCATCACCTTATGGCGATACCACTTGAGCGCCACCCTCTCGA
ATCTTCGATCCAGAGCCTGTAGTTCCCAAAAATTACGAAGCCCAAATTTC
TGGAAGCAGGTTTGGAAAAATCTCAACCGTTTGGATTTTCCGCGCCAGCG
TTTCAGACGCTCCAAGGCCTTGTAGGCACCAACTATGAACCCTCTGACTC
TCTGTTCAGCTTTCATAGTATCCATTGAGAGATCAGGCATGTCCATCACA
TCCTTCATCGTGCCATCCGAGTTGTAGTATGCCAAGCACTGGACACGCAG
CTGTTCTCTACGCATCAGCAATCCCTGAACAGTTGGGTCCGTAACGCCAA
TAGGAGAATGGCATTGGGCACTGGCTCGCTCGGCAGGAACATCCTTATGA
ATCTTCTTTGGCGGCTTTGGCGGCGGAATCTTCGATTTATATTTTGATTC
GATTGTGTTTTTCAAACGTTCGGCCATTTCCTCAAAGCAATCCCTCAGAT
TTTTCACAGCACTTGATCGGCGGTTGACCTGATCTATGACATTGGTGATC
TTGATGAGTTTCTCTTGGGATAAGGAACTGGAGGAATGGGTTCTTCCGCT
GTCAGGTGCATCCCGA
BO10431.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8006-PA | 1512 | CG8006-RA | 612..1509 | 916..19 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8006-RA | 1733 | CG8006-RA | 687..1584 | 916..19 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8212576..8213473 | 916..19 | 4490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:20:52 has no hits.
BO10431.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:40 Download gff for
BO10431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-PA | 613..1512 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:36 Download gff for
BO10431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-PA | 613..1512 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:25:05 Download gff for
BO10431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-RA | 688..1595 | 8..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:23 Download gff for
BO10431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-RA | 688..1595 | 8..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:23 Download gff for
BO10431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8212577..8213484 | 8..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:25:05 Download gff for
BO10431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8205677..8206584 | 8..915 | 99 | | Minus |
BO10431.5prime Sequence
910 bp (811 high quality bases) assembled on 2006-04-19
> BO10431.5prime
GAAGTTATCAGTCGACATGAAGGATCTAAGCGAGGAGTTACTGGATCGCC
ATTTCAGGCAGCAGCTAGCCAGTTACAAGTATGCCGATCAGGCAAGGGCT
AAGCAGTCGGATCGCCCCATCATGGCCAGATGGATAAAGATATTCGAGAA
GGCTCCTCTCAGCGAGAAGTTGGCCCGAAATAGCCTGATGCTGCTCATGC
ATGGCCACTTGAAGGACTTTGGAGTGCTCAAGGAACCGTTCACGGATGTG
CGTAACTACAGTAGGAATCTGAACGTAATTTTGGATGAGTACAGAGGCCA
GCCATGTAAGAAGTTAGCTACTGGCAAATCACCTACACTGCTCAAGAAGT
GCTCGACTCAAATTTTACGACCCAGGAAACTGGAACCCATCAAGGAGGTT
TCCGAACAATCGGAAAATGATCCTACGACCAGTAGTTTTGCCAGCATTGT
GACAATAATACGAAAAACAAATACGCGATCCTCTGACTCGAAGGATAGCC
AAGTTTATCCAAGGACTGGCTTCGAGTCCCCAAATGGTGCTGATAGTCAC
ACTGTGAAGAAGAGAGTCGAACTATTGGAGTATGAGCTCTCGAGAAATAA
GCAGCATCCATCGAGCTCCACATTCAATCGGGATGCACCTGACAGCGGAA
GAACCCATTCCTCCAGTTCCTTATCCCAAGAGAAACTCATCAAGATCACC
AATGTCATAGATCAGGTCAACCGCCGATCAAGTGCTGTGAAAAATCTGAG
GGATTGCTTTGAGGAAATGGCCGAACGTTTGAAAAACACAATCGAATCAA
AATATAAATCGAAGATTCCGCCGCCAAAGCCGCCAAAGAAGATTCATAAA
GATGTTCCTGCCGAGCGAGCCAGTGCCCCATGCCATTCTCCTATGGGCGT
TACGGACCCA
BO10431.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8006-PA | 1512 | CG8006-RA | 1..894 | 17..910 | 4395 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8006-RA | 1733 | CG8006-RA | 75..969 | 16..910 | 4430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8211964..8212858 | 16..910 | 4430 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:44:50 has no hits.
BO10431.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:41 Download gff for
BO10431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:38 Download gff for
BO10431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:13 Download gff for
BO10431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-RA | 68..968 | 7..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:13 Download gff for
BO10431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-RA | 68..968 | 7..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:13 Download gff for
BO10431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8211957..8212857 | 7..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:13 Download gff for
BO10431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8205057..8205957 | 7..909 | 99 | | Plus |
BO10431.complete Sequence
1543 bp (1543 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631751
> BO10431.complete
GAAGTTATCAGTCGACATGAAGGATCTAAGCGAGGAGTTACTGGATCGCC
ATTTCAGGCAGCAGCTAGCCAGTTACAAGTATGCCGATCAGGCAAGGGCT
AAGCAGTCGGATCGCCCCATCATGGCCAGATGGATAAAGATATTCGAGAA
GGCTCCTCTCAGCGAGAAGTTGGCCCGAAATAGCCTGATGCTGCTCATGC
ATGGCCACTTGAAGGACTTTGGAGTGCTCAAGGAACCGTTCACGGATGTG
CGTAACTACAGTAGGAATCTGAACGTAATTTTGGATGAGTACAGAGGCCA
GCCATGTAAGAAGTTAGCTACTGGCAAATCACCTACACTGCTCAAGAAGT
GCTCGACTCAAATTTTACGACCCAGGAAACTGGAACCCATCAAGGAGGTT
TCCGAACAATCGGAAAATGATCCTACGACCAGTAGTTTTGCCAGCATTGT
GACAATAATACGAAAAACAAATACGCGATCCTCTGACTCGAAGGATAGCC
AAGTTTATCCAAGGACTGGCTTCGAGTCCCCAAATGGTGCTGATAGTCAC
ACTGTGAAGAAGAGAGTCGAACTATTGGAGTATGAGCTCTCGAGAAATAA
GCAGCATCCATCGAGCTCCACATTCAATCGGGATGCACCTGACAGCGGAA
GAACCCATTCCTCCAGTTCCTTATCCCAAGAGAAACTCATCAAGATCACC
AATGTCATAGATCAGGTCAACCGCCGATCAAGTGCTGTGAAAAATCTGAG
GGATTGCTTTGAGGAAATGGCCGAACGTTTGAAAAACACAATCGAATCAA
AATATAAATCGAAGATTCCGCCGCCAAAGCCGCCAAAGAAGATTCATAAG
GATGTTCCTGCCGAGCGAGCCAGTGCCCAATGCCATTCTCCTATTGGCGT
TACGGACCCAACTGTTCAGGGATTGCTGATGCGTAGAGAACAGCTGCGTG
TCCAGTGCTTGGCATACTACAACTCGGATGGCACGATGAAGGATGTGATG
GACATGCCTGATCTCTCAATGGATACTATGAAAGCTGAACAGAGAGTCAG
AGGGTTCATAGTTGGTGCCTACAAGGCCTTGGAGCGTCTGAAACGCTGGC
GCGGAAAATCCAAACGGTTGAGATTTTTCCAAACCTGCTTCCAGAAATTT
GGGCTTCGTAATTTTTGGGAACTACAGGCTCTGGATCGAAGATTCGAGAG
GGTGGCGCTCAAGTGGTATCGCCATAAGGTGATGGCATGTCTACAGAACA
CCTGGCTTACTTATCGCAGAAGCATCTTGGCCCAGAAGCTATCGTACGAC
GAGGACGATCTACAGCAGATGCGCCACCAGATTGAGCTGCAGGAGGAGTT
GCAGCGGGAGCGAATGGTCCACCTGGCCAAGATCATGGAACTGTGCAGGA
GCAACTGTCACGGGATCGTCACGCATAAAGTCCTTAGCAAGATGCTCGAT
CGCCTGGAGGATGAACACGACCAGCTGGCCCGGGATCTCAAATCACTGCT
CCGCCAGAAGGACCAACTGTTCCAGGCAAGCTTTCTAGACCAT
BO10431.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8006-RA | 1512 | CG8006-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8006-RA | 1733 | CG8006-RA | 75..1584 | 16..1525 | 7550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8211964..8213473 | 16..1525 | 7550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:38:30 has no hits.
BO10431.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:43 Download gff for
BO10431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-RA | 1..1512 | 17..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:19 Download gff for
BO10431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-RA | 68..1595 | 7..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:08 Download gff for
BO10431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-RA | 76..1584 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:43 Download gff for
BO10431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-RA | 68..1595 | 7..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:18 Download gff for
BO10431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8006-RA | 76..1584 | 17..1527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:18 Download gff for
BO10431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8211965..8213473 | 17..1527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:08 Download gff for
BO10431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8205065..8206573 | 17..1527 | 99 | | Plus |
BO10431.pep Sequence
Translation from 16 to 1543
> BO10431.pep
MKDLSEELLDRHFRQQLASYKYADQARAKQSDRPIMARWIKIFEKAPLSE
KLARNSLMLLMHGHLKDFGVLKEPFTDVRNYSRNLNVILDEYRGQPCKKL
ATGKSPTLLKKCSTQILRPRKLEPIKEVSEQSENDPTTSSFASIVTIIRK
TNTRSSDSKDSQVYPRTGFESPNGADSHTVKKRVELLEYELSRNKQHPSS
STFNRDAPDSGRTHSSSSLSQEKLIKITNVIDQVNRRSSAVKNLRDCFEE
MAERLKNTIESKYKSKIPPPKPPKKIHKDVPAERASAQCHSPIGVTDPTV
QGLLMRREQLRVQCLAYYNSDGTMKDVMDMPDLSMDTMKAEQRVRGFIVG
AYKALERLKRWRGKSKRLRFFQTCFQKFGLRNFWELQALDRRFERVALKW
YRHKVMACLQNTWLTYRRSILAQKLSYDEDDLQQMRHQIELQEELQRERM
VHLAKIMELCRSNCHGIVTHKVLSKMLDRLEDEHDQLARDLKSLLRQKDQ
LFQASFLDH
BO10431.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8006-PA | 503 | CG8006-PA | 1..503 | 1..503 | 2603 | 100 | Plus |
| CG7366-PA | 389 | CG7366-PA | 1..95 | 1..94 | 180 | 40 | Plus |
