Clone Sequence Records
BO10432.3prime Sequence
973 bp (850 high quality bases) assembled on 2006-04-19
> BO10432.3prime
ATGGTCTAGAAAGCTTGCGCGCTGGTTCCTTTGGTCAACGAACTCCTCCT
CGGGCATCGCAGGCAAACCATCCTTGTATGTGACATTGCTGCGGTTCAAT
GGATCACCATTACGGCAGCGAACGCAGGGCCCCAGGAATCGTAGCATCCG
ACTGCCCAGTGTCGTCCTTTTACTCCTAAAGTGGTCATGCGCCTCCAAAT
GCGACATCGACATCGAGTGGACCAGCAGACGCGTCTGACTATCGTTGATG
CTCTGATTATGAATGGTGTCATGGCTCTGATTGCGCCCCTGACTGATATT
GAAGCCCATCACCTCGATGACTCGGTTGTTGCGCTTGTCAAAGTAGTACA
TGCCCTCATGCTGGCCCCATTGCCTGGGCGAGATGAGCTCCCCCTGTTGT
TCCCACTGCCGCCTGGAGCTGGGTCGCTCCTCCTCGTGCGCCTCCACCTC
GATGGCCGAGTCGTTGCTGCTCGGCTGGCTGGTTTCCGAGTTGTTGGGCG
CCGGGGTTCTTCTGACCAAGGCCCTGGATGAGGTTTCCACACGATGTTCG
CCACTACCGCTGCCATCAGCTTCGGTGCTAACGCTGCTAAAGTCCAAAGA
TTGTGGATGAATCGCGCGTTGGACCTGGACGGGATTCTGGGCCACTCGGG
CAGAAGGCGCCACACTGAGCAGTGCCAACTCGATGGATCCTTTGCTGCTG
TTGTAGGTCAGGTCGCCCAGGGGATGGGGTGTGACCAGGACGTTTCCGGA
GGCGGGTATGGTGTCCACCAGGAAATCCGTTTGAGTGGCCTTGGCACTGG
TCGCCGATCGAATGTGGTACATGAAGTGGTGCTGTGAGTTGTCCTGCTGG
CGCCTAAGCTTCTGCTGGCATTCGCTTAGCTCGGTGCGCAGGGTCTCGAA
AATGCACTTCATCTTCACAAAATCATCTGTCTTTCTGTCCAGTCGTTCCT
GGACATACTCGTTGAAGCCCTGC
BO10432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3429-PA | 1647 | swa-RA | 690..1644 | 973..19 | 4750 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-RA | 2022 | CG3429-RA | 802..1756 | 973..19 | 4760 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6363684..6364217 | 19..552 | 2670 | 100 | Plus |
X | 23542271 | X | 6364304..6364726 | 551..973 | 2100 | 99.8 | Plus |
X | 23542271 | X | 6362196..6362451 | 707..971 | 735 | 86 | Plus |
X | 23542271 | X | 6361800..6361974 | 203..384 | 590 | 89.6 | Plus |
X | 23542271 | X | 6362088..6362196 | 551..659 | 365 | 89 | Plus |
X | 23542271 | X | 6361752..6361799 | 19..66 | 240 | 100 | Plus |
X | 23542271 | X | 6361979..6362036 | 495..552 | 200 | 89.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:17:08 has no hits.
BO10432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:42 Download gff for
BO10432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-PA | 690..1647 | 18..973 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:39 Download gff for
BO10432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3429-PA | 690..1647 | 18..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:51 Download gff for
BO10432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 802..1756 | 19..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:44:59 Download gff for
BO10432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 802..1756 | 19..973 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:44:59 Download gff for
BO10432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6363684..6364216 | 19..551 | 100 | <- | Plus |
X | 6364305..6364726 | 552..973 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:51 Download gff for
BO10432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6257717..6258249 | 19..551 | 100 | <- | Plus |
arm_X | 6258338..6258759 | 552..973 | 99 | | Plus |
BO10432.5prime Sequence
859 bp (791 high quality bases) assembled on 2006-04-19
> BO10432.5prime
GAAGTTATCAGTCGACATGAGTCTACAGGACGAGAGTTTTCCGACGGACG
AGCTGTTTGACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACC
TGGTTCGCGGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCC
ATTTTTGGAGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATG
TGGCCAACAAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGAT
CAGGAGGATGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAA
ACTGGGTTGCGAGAAGGCTCCATTGGGCAGCGGGCGCTCCAGCAAGGCGG
TCTCTTACCAGGACATCCATTCGGCCTACACGAAGCGCCGCTTCCAGCAC
GTGACCAGCAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCA
AAAGAGACGCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGC
CGGAGAGTCTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGAC
TTCAAGGTGGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTA
CAATTCCAATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCG
AGAACGAGAGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAGCGAAG
CGTCTGCAGGGCTTCAACGAGTATGTCCAGGAACGACTGGACAGAAAGAC
AGATGATTTTGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGAGC
TAAGCGAATGCCAGCAGAAGCTTAGGCGCCAGCAGGACAACTCACAGCAC
CACTTCATG
BO10432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3429-PA | 1647 | swa-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-RA | 2022 | CG3429-RA | 113..955 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6364573..6365145 | 859..287 | 2865 | 100 | Minus |
X | 23542271 | X | 6365325..6365596 | 288..17 | 1360 | 100 | Minus |
X | 23542271 | X | 6362300..6362662 | 859..497 | 1230 | 89.3 | Minus |
X | 23542271 | X | 6362667..6362833 | 456..290 | 625 | 91.6 | Minus |
X | 23542271 | X | 6363110..6363242 | 288..150 | 525 | 93.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:05:58 has no hits.
BO10432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:43 Download gff for
BO10432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:41 Download gff for
BO10432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3429-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:28 Download gff for
BO10432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 109..955 | 10..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:16 Download gff for
BO10432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 109..955 | 10..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:16 Download gff for
BO10432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6365326..6365600 | 10..287 | 98 | | Minus |
X | 6364573..6365144 | 288..859 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:28 Download gff for
BO10432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6258606..6259177 | 288..859 | 100 | <- | Minus |
arm_X | 6259359..6259633 | 10..287 | 98 | | Minus |
BO10432.complete Sequence
1678 bp (1678 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631752
> BO10432.complete
GAAGTTATCAGTCGACATGAGTCTACAGGACGAGAGTTTTCCGACGGACG
AGCTGTTTGACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACC
TGGTTCGCGGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCC
ATTTTTGGAGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATG
TGGCCAACAAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGAT
CAGGAGGATGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAA
ACTGGGTTGCGAGAAGGCTCCATTGGGCAGCGGGCGCTCCAGCAAGGCGG
TCTCTTACCAGGACATCCATTCGGCCTACACGAAGCGCCGCTTCCAGCAC
GTGACCAGCAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCA
AAAGAGACGCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGC
CGGAGAGTCTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGAC
TTCAAGGTGGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTA
CAATTCCAATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCG
AGAACGAGAGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAGCGAAG
CGTCTGCAGGGCTTCAACGAGTATGTCCAGGAACGACTGGACAGAAAGAC
AGATGATTTTGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGAGC
TAAGCGAATGCCAGCAGAAGCTTAGGCGCCAGCAGGACAACTCACAGCAC
CACTTCATGTACCACATTCGATCGGCGACCAGTGCCAAGGCCACTCAAAC
GGATTTCCTGGTGGACACCATACCCGCCTCCGGAAACGTCCTGGTCACAC
CCCATCCCCTGGGCGACCTGACCTACAACAGCAGCAAAGGATCCATCGAG
TTGGCACTGCTCAGTGTGGCGCCTTCTGCCCGAGTGGCCCAGAATCCCGT
CCAGGTCCAACGCGCGATTCATCCACAATCTTTGGACTTTAGCAGCGTTA
GCACCGAAGCTGATGGCAGCGGTAGTGGCGAACATCGTGTGGAAACCTCA
TCCAGGGCCTTGGTCAGAAGAACCCCGGCGCCCAACAACTCGGAAACCAG
CCAGCCGAGCAGCAACGACTCGGCCATCGAGGTGGAGGCGCACGAGGAGG
AGCGACCCAGCTCCAGGCGGCAGTGGGAACAACAGGGGGAGCTCATCTCG
CCCAGGCAATGGGGCCAGCATGAGGGCATGTACTACTTTGACAAGCGCAA
CAACCGAGTCATCGAGGTGATGGGCTTCAATATCAGTCAGGGGCGCAATC
AGAGCCATGACACCATTCATAATCAGAGCATCAACGATAGTCAGACGCGT
CTGCTGGTCCACTCGATGTCGATGTCGCATTTGGAGGCGCATGACCACTT
TAGGAGTAAAAGGACGACACTGGGCAGTCGGATGCTACGATTCCTGGGGC
CCTGCGTTCGCTGCCGTAATGGTGATCCATTGAACCGCAGCAATGTCACA
TACAAGGATGGTTTGCCTGCGATGCCCGAGGAGGAGTTCGTTGACCAAAG
GAACCAGCGCGCAAGCTTTCTAGACCAT
BO10432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-RA | 1647 | CG3429-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-RA | 2022 | CG3429-RA | 113..1756 | 17..1660 | 8220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6364304..6365145 | 1128..287 | 4210 | 100 | Minus |
X | 23542271 | X | 6363684..6364217 | 1660..1127 | 2670 | 100 | Minus |
X | 23542271 | X | 6362196..6362662 | 972..497 | 1520 | 88.4 | Minus |
X | 23542271 | X | 6365325..6365596 | 288..17 | 1360 | 100 | Minus |
X | 23542271 | X | 6362667..6362833 | 456..290 | 625 | 91.6 | Minus |
X | 23542271 | X | 6361800..6361974 | 1476..1295 | 590 | 89.6 | Minus |
X | 23542271 | X | 6363110..6363242 | 288..150 | 525 | 93.5 | Minus |
X | 23542271 | X | 6362088..6362196 | 1128..1020 | 365 | 89 | Minus |
X | 23542271 | X | 6361752..6361799 | 1660..1613 | 240 | 100 | Minus |
X | 23542271 | X | 6361979..6362036 | 1184..1127 | 200 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:12:10 has no hits.
BO10432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:48 Download gff for
BO10432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 1..1647 | 17..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:22 Download gff for
BO10432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 110..1757 | 10..1660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:53 Download gff for
BO10432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 113..1756 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:48 Download gff for
BO10432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 110..1757 | 10..1660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:36 Download gff for
BO10432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swa-RA | 113..1756 | 17..1662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:36 Download gff for
BO10432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6363682..6364216 | 1128..1662 | 99 | <- | Minus |
X | 6364305..6365144 | 288..1127 | 100 | <- | Minus |
X | 6365326..6365596 | 17..287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:53 Download gff for
BO10432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6257715..6258249 | 1128..1662 | 99 | <- | Minus |
arm_X | 6258338..6259177 | 288..1127 | 100 | <- | Minus |
arm_X | 6259359..6259629 | 17..287 | 100 | | Minus |
BO10432.pep Sequence
Translation from 16 to 1678
> BO10432.pep
MSLQDESFPTDELFDQLNNLSSSGARNTWFAEHHKPAVFERDTAPFLEIC
YADPDFDADGDVANKSAKTCVSDPVGRDQEDEDDYDEDVDGDDHKLGCEK
APLGSGRSSKAVSYQDIHSAYTKRRFQHVTSKVGQYIAEIQAQDQKRRNV
KFAGFQRVNSMPESLTPTLQQVYVHDGDFKVDKNCQTHSNSDSNYNSNSN
NSSSSFDRLLAENESLQQKINSLRVEAKRLQGFNEYVQERLDRKTDDFVK
MKCNFETLRTELSECQQKLRRQQDNSQHHFMYHIRSATSAKATQTDFLVD
TIPASGNVLVTPHPLGDLTYNSSKGSIELALLSVAPSARVAQNPVQVQRA
IHPQSLDFSSVSTEADGSGSGEHRVETSSRALVRRTPAPNNSETSQPSSN
DSAIEVEAHEEERPSSRRQWEQQGELISPRQWGQHEGMYYFDKRNNRVIE
VMGFNISQGRNQSHDTIHNQSINDSQTRLLVHSMSMSHLEAHDHFRSKRT
TLGSRMLRFLGPCVRCRNGDPLNRSNVTYKDGLPAMPEEEFVDQRNQRAS
FLDH
BO10432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swa-PA | 548 | CG3429-PA | 1..548 | 1..548 | 2872 | 100 | Plus |