Clone Sequence Records
BO10433.3prime Sequence
902 bp (817 high quality bases) assembled on 2006-04-19
> BO10433.3prime
ATGGTCTAGAAAGCTTGCGGAACTCGAGATGGCCGCTGGTGCCGTGCTGC
CGTTGCTCAGCCTCGCTGGGGAGGTGGTGACGGTCGTCTGGAGGGCCGGC
TTCTGCTCATCGTCCTCCGGATTGTCCCAGTACTGACGCTCACCGGATCC
GAAGATGTTGTAGAAGGTACCGCAAATGATGTACACAAAGGCAGCGATGA
AGAACACGATCTGCCACTGACCCATCATGGGCTTGCTGGGATCAGAAATG
AGGTGACCTGCAGCAATGGGCGCTAAGAGACCAGCCAAATTGGCAGAGCA
GTTAGTGATCGACATTAGGAAGCCGGCGAAACGCGGTGTGAGGTCCAAGT
GGTTGATCTTGAAGCCGGAGTAGATACCTCCATTAAGACCCACTCCGATG
GTGAGGATGGCCAAGGTCAGTGCTCTGTCGCAGCCCGTGTAGGAGGCGGC
GATTAGGGCGACTCCCGGTCCATACTGGCCAATACTGTTGATCAGCTTCC
TGGTGGCCGTGTGCGAGAATCTCTTCGAGCTAATCATCCAATCGGCGACC
ACCGAGATGAACATGGAGAAGAGCCACATGGCCAAGTAGGGCAGGGAGCT
GAGCAGACCGTTCGACTTCAGGGAGAAGCGGAGCACCTGCTTCATGTAGG
TGGGCAGCTCGGTCATCAGAGTCTCATAGCCGTAGTTGTGACCCATGTGG
GCGAACAGAATGGCGTAGAAGGGCAGCGACTTGATGATAGCCTTGAAGGG
AATGGGAGGGCTCTTAACAACATCAGTTCCCCAGAGGGAATCGTTAATGT
ACTTCTTCTCGCGCTCATCAATAGTGGGATGCGAAGAGGGATCCTCGTGC
ACGAAGATCAGGAAGGCGATGGACCAGACGGTACCCACAATTCCCAACAC
AT
BO10433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8098-PA | 1551 | Picot-RA | 665..1548 | 902..19 | 4395 | 99.8 | Minus |
| CG8098-PB | 1590 | Picot-RB | 704..1587 | 902..19 | 4395 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RD | 2870 | CG8098-RD | 1550..2433 | 902..19 | 4405 | 99.9 | Minus |
| Picot-RC | 2367 | CG8098-RC | 1047..1930 | 902..19 | 4405 | 99.9 | Minus |
| Picot-RB | 2333 | CG8098-RB | 1013..1896 | 902..19 | 4405 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16656036..16656568 | 232..764 | 2665 | 100 | Plus |
| 2R | 25286936 | 2R | 16655760..16655974 | 19..233 | 1075 | 100 | Plus |
| 2R | 25286936 | 2R | 16656631..16656770 | 763..902 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:11:53 has no hits.
BO10433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:44 Download gff for
BO10433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-PB | 704..1590 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:42 Download gff for
BO10433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8098-PB | 704..1590 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:53:03 Download gff for
BO10433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RB | 1013..1896 | 19..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:20 Download gff for
BO10433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RB | 1013..1896 | 19..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:20 Download gff for
BO10433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16655760..16655972 | 19..231 | 100 | <- | Plus |
| 2R | 16656036..16656566 | 232..762 | 100 | <- | Plus |
| 2R | 16656631..16656770 | 763..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:53:03 Download gff for
BO10433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12544136..12544275 | 763..902 | 99 | | Plus |
| arm_2R | 12543265..12543477 | 19..231 | 100 | <- | Plus |
| arm_2R | 12543541..12544071 | 232..762 | 100 | <- | Plus |
BO10433.5prime Sequence
813 bp (812 high quality bases) assembled on 2006-04-19
> BO10433.5prime
GAAGTTATCAGTCGACATGTCAGCGTCGAAGGAGGCGATTTGCGGGAGCA
CGGAGAAGGATCTGGAGAAGCCGGCATTGGGATGCTTTGCCACCCGGTAC
TTTGTGACCTTTATGCTTTTCCTGGGCATGGCCAATGCCTATGTGATGCG
CACCAACATGTCGGTGGCCATTGTGGCCATGGTGAACCACACGGCCATCA
AGTCTGGAGAGGCAGAGGAGTACGATGATGAGTGCGGAGATCGGGATATT
CCTATTGATGACTCTCAGGATGGCGAGTTCGCCTGGAGCTCAGCTCTGCA
GGGCTACATCTTGTCGTCCTTCTTCTATGGCTATGTCATCACCCAGATTC
CCTTTGGCATATTGGCCAAGAAGTACGGTTCCCTGCGCTTCCTCGGCTAC
GGCATGTTGATCAACTCCGTGTTTGCCTTCCTGGTTCCGGTGGCTGCCCG
CGGTGGAGGTGTTTGGGGTCTGTGCGCCGTGCGTTTCATCCAAGGTCTAG
GTGAGGGTCCCATCGTGCCCTGCACCCACGCCATGTTGGCCAAATGGATT
CCGCCCAACGAAAGGTCACGAATGGGTGCCGCCGTGTATGCGGGTGCACA
GTTTGGAACCATCATCTCTATGCCACTTTCCGGCCTGCTGGCTGAATACG
GATTCGATGGCGGCTGGCCGTCGATCTTCTATGTGTTTGGAATTGTGGGT
ACCGTCTGGTCCATCGCCTTCCTGATCTTCGTGCACGAGGATCCCTCTTC
GCATCCCACTATTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCTCT
GGGGAACTGATGT
BO10433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8098-PA | 1551 | Picot-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
| CG8098-PB | 1590 | Picot-RB | 104..836 | 81..813 | 3665 | 100 | Plus |
| CG6978-PA | 1440 | CG6978-RA | 154..221 | 128..195 | 190 | 91.1 | Plus |
| CG4330-PA | 1680 | CG4330-RA | 266..302 | 159..195 | 160 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RD | 2870 | CG8098-RD | 886..1682 | 17..813 | 3985 | 100 | Plus |
| Picot-RC | 2367 | CG8098-RC | 383..1179 | 17..813 | 3985 | 100 | Plus |
| Picot-RA | 2735 | CG8098-RA | 751..1547 | 17..813 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16656638..16657194 | 813..257 | 2785 | 100 | Minus |
| 2R | 25286936 | 2R | 16657263..16657440 | 257..80 | 890 | 100 | Minus |
| X | 23542271 | X | 4784486..4784872 | 296..682 | 465 | 74.7 | Plus |
| 2R | 25286936 | 2R | 16663514..16663578 | 81..17 | 325 | 100 | Minus |
| X | 23542271 | X | 4784336..4784422 | 113..199 | 270 | 87.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:39:37 has no hits.
BO10433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:44 Download gff for
BO10433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:43 Download gff for
BO10433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8098-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:19 Download gff for
BO10433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 744..1547 | 8..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:02 Download gff for
BO10433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 744..1547 | 8..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:02 Download gff for
BO10433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16657264..16657439 | 81..256 | 100 | <- | Minus |
| 2R | 16663515..16663585 | 8..80 | 94 | | Minus |
| 2R | 16656638..16657194 | 257..813 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:19 Download gff for
BO10433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12544143..12544699 | 257..813 | 100 | <- | Minus |
| arm_2R | 12544769..12544944 | 81..256 | 100 | <- | Minus |
| arm_2R | 12551020..12551090 | 8..80 | 94 | | Minus |
BO10433.complete Sequence
1582 bp (1582 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631753
> BO10433.complete
GAAGTTATCAGTCGACATGTCAGCGTCGAAGGAGGCGATTTGCGGGAGCA
CGGAGAAGGATCTGGAGAAGCCGGCATTGGGATGCTTTGCCACCCGGTAC
TTTGTGACCTTTATGCTTTTCCTGGGCATGGCCAATGCCTATGTGATGCG
CACCAACATGTCGGTGGCCATTGTGGCCATGGTGAACCACACGGCCATCA
AGTCTGGAGAGGCAGAGGAGTACGATGATGAGTGCGGAGATCGGGATATT
CCTATTGATGACTCTCAGGATGGCGAGTTCGCCTGGAGCTCAGCTCTGCA
GGGCTACATCTTGTCGTCCTTCTTCTATGGCTATGTCATCACCCAGATTC
CCTTTGGCATATTGGCCAAGAAGTACGGTTCCCTGCGCTTCCTCGGCTAC
GGCATGTTGATCAACTCCGTGTTTGCCTTCCTGGTTCCGGTGGCTGCCCG
CGGTGGAGGTGTTTGGGGTCTGTGCGCCGTGCGTTTCATCCAAGGTCTAG
GTGAGGGTCCCATCGTGCCCTGCACCCACGCCATGTTGGCCAAATGGATT
CCGCCCAACGAAAGGTCACGAATGGGTGCCGCCGTGTATGCGGGTGCACA
GTTTGGAACCATCATCTCTATGCCACTTTCCGGCCTGCTGGCTGAATACG
GATTCGATGGCGGCTGGCCGTCGATCTTCTATGTGTTTGGAATTGTGGGT
ACCGTCTGGTCCATCGCCTTCCTGATCTTCGTGCACGAGGATCCCTCTTC
GCATCCCACTATTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCTCT
GGGGAACTGATGTTGTTAAGAGCCCTCCCATTCCCTTCAAGGCTATCATC
AAGTCGCTGCCCTTCTACGCCATTCTGTTCGCCCACATGGGTCACAACTA
CGGCTATGAGACTCTGATGACCGAGCTGCCCACCTACATGAAGCAGGTGC
TCCGCTTCTCCCTGAAGTCGAACGGTCTGCTCAGCTCCCTGCCCTACTTG
GCCATGTGGCTCTTCTCCATGTTCATCTCGGTGGTCGCCGATTGGATGAT
TAGCTCGAAGAGATTCTCGCACACGGCCACCAGGAAGCTGATCAACAGTA
TTGGCCAGTATGGACCGGGAGTCGCCCTAATCGCCGCCTCCTACACGGGC
TGCGACAGAGCACTGACCTTGGCCATCCTCACCATCGGAGTGGGTCTTAA
TGGAGGTATCTACTCCGGCTTCAAGATCAACCACTTGGACCTCACACCGC
GTTTCGCCGGCTTCCTAATGTCGATCACTAACTGCTCTGCCAATTTGGCT
GGTCTCTTAGCGCCCATTGCTGCAGGTCACCTCATTTCTGATCCCAGCAA
GCCCATGATGGGTCAGTGGCAGATCGTGTTCTTCATCGCTGCCTTTGTGT
ACATCATTTGCGGTACCTTCTACAACATCTTCGGATCCGGTGAGCGTCAG
TACTGGGACAATCCGGAGGACGATGAGCAGAAGCCGGCCCTCCAGACGAC
CGTCACCACCTCCCCAGCGAGGCTGAGCAACGGCAGCACGGCACCAGCGG
CCATCTCGAGTTCCGCAAGCTTTCTAGACCAT
BO10433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RD | 1551 | CG8098-PD | 1..1548 | 17..1564 | 7740 | 100 | Plus |
| Picot-RC | 1551 | CG8098-PC | 1..1548 | 17..1564 | 7740 | 100 | Plus |
| Picot-RA | 1551 | CG8098-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RD | 2870 | CG8098-RD | 886..2433 | 17..1564 | 7740 | 100 | Plus |
| Picot-RC | 2367 | CG8098-RC | 383..1930 | 17..1564 | 7740 | 100 | Plus |
| Picot-RA | 2735 | CG8098-RA | 751..2298 | 17..1564 | 7740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16656631..16657194 | 820..257 | 2820 | 100 | Minus |
| 2R | 25286936 | 2R | 16656036..16656568 | 1351..819 | 2665 | 100 | Minus |
| 2R | 25286936 | 2R | 16655760..16655974 | 1564..1350 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 16657263..16657440 | 257..80 | 890 | 100 | Minus |
| X | 23542271 | X | 4784486..4784872 | 296..682 | 465 | 74.7 | Plus |
| 2R | 25286936 | 2R | 16663514..16663578 | 81..17 | 325 | 100 | Minus |
| X | 23542271 | X | 4784336..4784422 | 113..199 | 270 | 87.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:39:50 has no hits.
BO10433.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:49 Download gff for
BO10433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 1..1551 | 17..1565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:23 Download gff for
BO10433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 747..2301 | 8..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:51 Download gff for
BO10433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 751..2298 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:49 Download gff for
BO10433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 747..2301 | 8..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:51 Download gff for
BO10433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 751..2298 | 17..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:51 Download gff for
BO10433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16655758..16655972 | 1352..1566 | 99 | <- | Minus |
| 2R | 16656036..16656566 | 821..1351 | 100 | <- | Minus |
| 2R | 16656631..16657194 | 257..820 | 100 | <- | Minus |
| 2R | 16657264..16657439 | 81..256 | 100 | <- | Minus |
| 2R | 16663515..16663578 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:51 Download gff for
BO10433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12543263..12543477 | 1352..1566 | 99 | <- | Minus |
| arm_2R | 12543541..12544071 | 821..1351 | 100 | <- | Minus |
| arm_2R | 12544136..12544699 | 257..820 | 100 | <- | Minus |
| arm_2R | 12544769..12544944 | 81..256 | 100 | <- | Minus |
| arm_2R | 12551020..12551083 | 17..80 | 100 | | Minus |
BO10433.pep Sequence
Translation from 16 to 1582
> BO10433.pep
MSASKEAICGSTEKDLEKPALGCFATRYFVTFMLFLGMANAYVMRTNMSV
AIVAMVNHTAIKSGEAEEYDDECGDRDIPIDDSQDGEFAWSSALQGYILS
SFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAARGGGVW
GLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTII
SMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTID
EREKKYINDSLWGTDVVKSPPIPFKAIIKSLPFYAILFAHMGHNYGYETL
MTELPTYMKQVLRFSLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRF
SHTATRKLINSIGQYGPGVALIAASYTGCDRALTLAILTIGVGLNGGIYS
GFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAGHLISDPSKPMMGQ
WQIVFFIAAFVYIICGTFYNIFGSGERQYWDNPEDDEQKPALQTTVTTSP
ARLSNGSTAPAAISSSASFLDH
BO10433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-PD | 516 | CG8098-PD | 1..516 | 1..516 | 2708 | 100 | Plus |
| Picot-PC | 516 | CG8098-PC | 1..516 | 1..516 | 2708 | 100 | Plus |
| Picot-PA | 516 | CG8098-PA | 1..516 | 1..516 | 2708 | 100 | Plus |
| Picot-PB | 529 | CG8098-PB | 27..529 | 14..516 | 2603 | 98.6 | Plus |
| CG6978-PA | 479 | CG6978-PA | 37..479 | 23..479 | 1469 | 60.8 | Plus |
