Clone Sequence Records
BO10434.3prime Sequence
930 bp (860 high quality bases) assembled on 2006-04-19
> BO10434.3prime
ATGGTCTAGAAAGCTTGCATCCGGATACAGGTAGTCCTGCAGGATGTTCT
GGAAGGCTATCTTTATCTTGCCGCGATCACGGCCGTTCAGCTTTTGGATG
TCGGGCAGCAGGCTCATCAGAAACATGGCATCCGGATCGGTCTTGCAGTC
GCACAGCTCCGCACCGCCGTTGGACACGGATCCGCCGGACGCGTTGTTGG
CTTCCAAACGCAGAGGAAGCGCTGACGGCGGCACCTGTGGATGTCCTCCA
TGCATATGGTTGTGCCCATGCCGTTGACTCAAGTAGCTACTGCTACTGCT
GGCACTAACACTACTACTGGGCGCCATCGGGGTGGCCACGGCCGCAGTGG
ATGGTGTGGGCAGTTCCGCTTCGGATAAGCCAGCAGTTCCTGGAACACCT
CCTCCTCCTCCGCCTCCGGCGTGCGTTGTAGTGCTAACCAAATCCACGGG
CTTGCTGAAAGTAGGTCGCACAAACGAAATGTTTGGATGGGCAGTCGGCT
GTGCGGAGTAGTTGACCCCGGCCACTGCTGCAGTTGGAGCTTGGAGTTCC
TGGGAACGCGGACGAATAGCGCCACGCATCTCGTCATGGTAGGTGCGCAT
TTGGAGGCGACCCGGAAGCATTCGGCTGGCGTGTGAATGCTGGTTGGCAT
AACGACGCTGGGCCTCCGCCGATGAAGAGCTAGAAGTAGGCGCCATCTTG
TGTAGGTCCTGGTCATCCTGTTCATCCTCCTCGGGCTCGTGCGCCTCTTG
TTCGTAGTCATCCACCGGCTCCTCGCACTCCGACTTAATGTCGTTGCCGT
CCAACTGGCCGTGGTAACGACTGTTGCGCTGCTGCTCCTCCTCCATGATG
TCATCCAGCTCGGAGTTGTTGTGTTCCGCCTCGTCAAAGTAGTCCAGATA
GTTGTCCAGCTGCTGTGCAGGTGGTGACTG
BO10434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-PA | 1413 | CG6276-RA | 499..1410 | 930..19 | 4560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-RA | 1806 | CG6276-RA | 655..1566 | 930..19 | 4560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15318443..15319354 | 19..930 | 4560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:18:25 has no hits.
BO10434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:46 Download gff for
BO10434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-PA | 499..1413 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:45 Download gff for
BO10434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-PA | 499..1413 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:38 Download gff for
BO10434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 655..1573 | 10..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:24 Download gff for
BO10434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 655..1573 | 10..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:24 Download gff for
BO10434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15318436..15319354 | 10..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:38 Download gff for
BO10434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11144158..11145076 | 10..930 | 99 | | Plus |
BO10434.5prime Sequence
987 bp (860 high quality bases) assembled on 2006-04-19
> BO10434.5prime
GAAGTTATCAGTCGACATGATGACGACCGACTTCGCGGGCAGCCAGTTCG
TGTCCAGCAATCCCAACACCAGCTGTAGTGCATCCCGCTGGCTAACGGAG
GAGGTCTTTAAACTAATCGAAATTGTGCAGCGCGACGAGGCCATCTACAA
TCCGAGGCACAAATACTACTTTTGCCGCCCGTACGTGGAGAACTTTTGGC
GCGAGGTGGATTTGAAGCTGGAAAAGAATCCGGGCGCCAGTCTGGCCAAG
TGGACCAATTTGCGCATCTCGTTCCGACGAGAGTACACCAACTATCTGGA
GGAAAAGGTGCCACCCTGCTGGTCCTACTTCGACCGCATGTTCTTTCTGC
ATCCGTATCTACGCAAGAAGCACCAGCAGCCCAAATCGCTGGACACACAG
GTGCAGGACGCCCTGGCACACCTCTCGAACCTTTCTAGTCGTATGCAGCG
TGAGCGTTCAGTGACCATTCCGGGCAGCAGCAGTATTGGTGGCCAGCCCA
CGCCCTCCGCCCACCAGTCACCACCTGCACAGCAGCTGGACAACTATCTG
GACTACTTTGACGAGGCGGAACACAACAACTCCGAGCTGGATGACATCAT
GGAGGAGGAGCAGCAGCGCAACAGTCGTTACCACGGCCAGTTGGACGGCA
ACGACATTAAGTCGGAGTGCGAGGAGCCGGTGGATGACTACGAACAAGAG
GCGCACGAGCCCGAGGAGGATGAACAGGATGACCAGGACCTACACAAGAT
GGCGCCTACTTCTAGCTCTTCATCGGCGGAGGCCCAGCGTCGTTATGCCA
ACCAGCATTCACACGCCAGCCGAATGCTTCCGGGTCGCCTCCAAATGCGC
ACCTACCATGACGAGATGCGTGGCGCTATTCGTCCGCGTTCCCAGGAACT
CCAAGCTCCAACTGCAGCAGTGGGCGGGGGTCAACTACTCCGCACAGCCG
ACTGCCCATCCAAACATTTCGTTTGTGCGAACTACTT
BO10434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-PA | 1413 | CG6276-RA | 1..913 | 17..929 | 4540 | 99.8 | Plus |
| CG6276-PA | 1413 | CG6276-RA | 910..970 | 927..987 | 280 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-RA | 1806 | CG6276-RA | 156..1126 | 16..987 | 4805 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15318883..15319767 | 987..102 | 4350 | 99.7 | Minus |
| 3R | 32079331 | 3R | 15319821..15319914 | 109..16 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:37:55 has no hits.
BO10434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:47 Download gff for
BO10434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-PA | 1..970 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:46 Download gff for
BO10434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-PA | 1..970 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:55 Download gff for
BO10434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 147..1126 | 9..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:21 Download gff for
BO10434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 147..1126 | 9..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:21 Download gff for
BO10434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15318883..15319765 | 104..987 | 99 | <- | Minus |
| 3R | 15319827..15319918 | 9..103 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:55 Download gff for
BO10434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11144605..11145487 | 104..987 | 99 | <- | Minus |
| arm_3R | 11145549..11145640 | 9..103 | 95 | | Minus |
BO10434.complete Sequence
1444 bp (1444 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631754
> BO10434.complete
GAAGTTATCAGTCGACATGATGACGACCGACTTCGCGGGCAGCCAGTTCG
TGTCCAGCAATCCCAACACCAGCTGTAGTGCATCCCGCTGGCTAACGGAG
GAGGTCTTTAAACTAATCGAAATTGTGCAGCGCGACGAGGCCATCTACAA
TCCGAGGCACAAATACTACTTTTGCCGCCCGTACGTGGAGAACTTTTGGC
GCGAGGTGGATTTGAAGCTGGAAAAGAATCCGGGCGCCAGTCTGGCCAAG
TGGACCAATTTGCGCATCTCGTTCCGACGAGAGTACACCAACTATCTGGA
GGAAAAGGTGCCACCCTGCTGGTCCTACTTCGACCGCATGTTCTTTCTGC
ATCCGTATCTACGCAAGAAGCACCAGCAGCCCAAATCGCTGGACACACAG
GTGCAGGACGCCCTGGCACACCTCTCGAACCTTTCTAGTCGTATGCAGCG
TGAGCGTTCAGTGACCATTCCGGGCAGCAGCAGTATTGGTGGCCAGCCCA
CGCCCTCCGCCCACCAGTCACCACCTGCACAGCAGCTGGACAACTATCTG
GACTACTTTGACGAGGCGGAACACAACAACTCCGAGCTGGATGACATCAT
GGAGGAGGAGCAGCAGCGCAACAGTCGTTACCACGGCCAGTTGGACGGCA
ACGACATTAAGTCGGAGTGCGAGGAGCCGGTGGATGACTACGAACAAGAG
GCGCACGAGCCCGAGGAGGATGAACAGGATGACCAGGACCTACACAAGAT
GGCGCCTACTTCTAGCTCTTCATCGGCGGAGGCCCAGCGTCGTTATGCCA
ACCAGCATTCACACGCCAGCCGAATGCTTCCGGGTCGCCTCCAAATGCGC
ACCTACCATGACGAGATGCGTGGCGCTATTCGTCCGCGTTCCCAGGAACT
CCAAGCTCCAACTGCAGCAGTGGCCGGGGTCAACTACTCCGCACAGCCGA
CTGCCCATCCAAACATTTCGTTTGTGCGACCTACTTTCAGCAAGCCCGTG
GATTTGGTTAGCACTACAACGCACGCCGGAGGCGGAGGAGGAGGAGGTGT
TCCAGGAACTGCTGGCTTATCCGAAGCGGAACTGCCCACACCATCCACTG
CGGCCGTGGCCACCCCGATGGCGCCCAGTAGTAGTGTTAGTGCCAGCAGT
AGCAGTAGCTACTTGAGTCAACGGCATGGGCACAACCATATGCATGGAGG
ACATCCACAGGTGCCGCCGTCAGCGCTTCCTCTGCGTTTGGAAGCCAACA
ACGCGTCCGGCGGATCCGTGTCCAACGGCGGTGCGGAGCTGTGCGACTGC
AAGACCGATCCGGATGCCATGTTTCTGATGAGCCTGCTGCCCGACATCCA
AAAGCTGAACGGCCGTGATCGCGGCAAGATAAAGATAGCCTTCCAGAACA
TCCTGCAGGACTACCTGTATCCGGATGCAAGCTTTCTAGACCAT
BO10434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-RA | 1413 | CG6276-PA | 1..1410 | 17..1426 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-RA | 1806 | CG6276-RA | 156..1566 | 16..1426 | 7055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15318443..15319767 | 1426..102 | 6625 | 100 | Minus |
| 3R | 32079331 | 3R | 15319821..15319914 | 109..16 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:53:37 has no hits.
BO10434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:50 Download gff for
BO10434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 1..1413 | 17..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:26 Download gff for
BO10434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 124..1550 | 9..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:33 Download gff for
BO10434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 157..1566 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:50 Download gff for
BO10434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 124..1550 | 9..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:48 Download gff for
BO10434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 157..1566 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:48 Download gff for
BO10434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15318439..15319765 | 104..1428 | 99 | <- | Minus |
| 3R | 15319827..15319913 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:33 Download gff for
BO10434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11144161..11145487 | 104..1428 | 99 | <- | Minus |
| arm_3R | 11145549..11145635 | 17..103 | 100 | | Minus |
BO10434.pep Sequence
Translation from 16 to 1444
> BO10434.pep
MMTTDFAGSQFVSSNPNTSCSASRWLTEEVFKLIEIVQRDEAIYNPRHKY
YFCRPYVENFWREVDLKLEKNPGASLAKWTNLRISFRREYTNYLEEKVPP
CWSYFDRMFFLHPYLRKKHQQPKSLDTQVQDALAHLSNLSSRMQRERSVT
IPGSSSIGGQPTPSAHQSPPAQQLDNYLDYFDEAEHNNSELDDIMEEEQQ
RNSRYHGQLDGNDIKSECEEPVDDYEQEAHEPEEDEQDDQDLHKMAPTSS
SSSAEAQRRYANQHSHASRMLPGRLQMRTYHDEMRGAIRPRSQELQAPTA
AVAGVNYSAQPTAHPNISFVRPTFSKPVDLVSTTTHAGGGGGGGVPGTAG
LSEAELPTPSTAAVATPMAPSSSVSASSSSSYLSQRHGHNHMHGGHPQVP
PSALPLRLEANNASGGSVSNGGAELCDCKTDPDAMFLMSLLPDIQKLNGR
DRGKIKIAFQNILQDYLYPDASFLDH
BO10434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-PA | 470 | CG6276-PA | 1..470 | 1..470 | 2497 | 100 | Plus |
