Clone Sequence Records
BO10435.3prime Sequence
881 bp (855 high quality bases) assembled on 2006-04-19
> BO10435.3prime
ATGGTCTAGAAAGCTTGCGTCCTTGCAGGTGGACGTGTCCATTGGACTGG
CTGGCTGGATAAAGGCCGTGGCCGCCGAGCTGGGCGGATTGGTTGGCGTA
AACGCCGACAGTGAGGAGTTGCTGCTGCTGTTAACAAGATTGCCGCTGGA
CGAGTTGTTCAGGCTGATGTTCATCAAATTGGACGACGACGACGAAGCGC
TGGAGTGGCTAGTGAGCTGGGCCAGCAGACCTCCACCTCCACCGCCGGCC
AAGAAGGTGGCACTGCCGCCAGCCGAATTTGACGAGCCAAGGCTTAGGCG
TTCGCCTCCCAGATTCGAGAGAAAGCCGCCAGCGGCATTCCCAGCTGATA
CGGACGCGGACGATGAGGAGCTGCCGGTTCCCAAAATGCCCAGCAGTGGG
TTGGTTGAGGTCAGCACGTTCGGTGCGGAAGTGTTCAGGCCCAGCATGGG
CGTTGGCAGTGCTGGCTTTATGAAGCGTTCGCTGGCACGACGATTCACTA
GCTGGCCGCAGGCATAGCAGCGGTTTTGCACCGCCGTGCCCGGACTTAGA
GGTCGGCTACTCGAGGGACTGTGGGAGACGGGACTGCTGATGGTGCGTTG
ACGTTGGGCGCTCACCGCTGAAGCTGCGGCGGCGGCTGCTGCCGTCGCTA
CAGCGAACGAACCGCCTCCCATCAGGTTCTCGTTGTAGAAGCGTTCCTCG
TCCATCTCCAGCGAGGATTCCGATTCGGAGAGGTGCCGGCATAGGGCTTC
GCGGCGCTCCACCTCCTGCTTTAGCTTGCGCTGAANGCGAGCGTTTTCCT
CGCGAATCGACTTCTCTTCCTGCGCATACTGCTGTGTTTTGATAGTGGCT
TCCTTCTGAGCGCTCGCCAGGTCGGAGCGAT
BO10435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PA | 1599 | CG6664-RA | 734..1596 | 881..19 | 4296 | 99.8 | Minus |
| CG6664-PB | 1599 | CG6664-RB | 734..1596 | 881..19 | 4296 | 99.8 | Minus |
| CG6664-PC | 1599 | CG6664-RC | 734..1596 | 881..19 | 4296 | 99.8 | Minus |
| CG6664-PD | 1716 | CG6664-RD | 851..1713 | 881..19 | 4296 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 2603 | CG6664-RC | 1174..2036 | 881..19 | 4304 | 99.9 | Minus |
| CG6664-RB | 2552 | CG6664-RB | 1123..1985 | 881..19 | 4304 | 99.9 | Minus |
| CG6664-RA | 2482 | CG6664-RA | 1053..1915 | 881..19 | 4304 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17013453..17013930 | 19..496 | 2390 | 100 | Plus |
| 3L | 28110227 | 3L | 17013993..17014378 | 496..881 | 1919 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-11 11:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2967 | 170..13 | 138 | 57.3 | Minus |
BO10435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:48 Download gff for
BO10435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 851..1716 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:48 Download gff for
BO10435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 851..1716 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:52:35 Download gff for
BO10435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RB | 1123..1985 | 19..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:03 Download gff for
BO10435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 1053..1915 | 19..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:03 Download gff for
BO10435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17013453..17013929 | 19..495 | 100 | <- | Plus |
| 3L | 17013993..17014378 | 496..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:52:35 Download gff for
BO10435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17006553..17007029 | 19..495 | 100 | <- | Plus |
| arm_3L | 17007093..17007478 | 496..881 | 99 | | Plus |
BO10435.5prime Sequence
876 bp (773 high quality bases) assembled on 2006-04-19
> BO10435.5prime
GAAGTTATCAGTCGACATGGAAAGTCCCTGTGAATCCGAAAGTTCGCTGG
ACGGTGGCACCATGCTGCCACCAAGCCCAGTTTCCCGGGAGCAACTCCAG
AAGAGGATCGAATCGCTCACCCAGCAGAACAAGGTGCTGAAAGCCGAACT
GGATACCTTCAAGACCAAGTGCAAAGTGGTGCAAGAGGAGAATCGCTGCC
TCAAGCAAGCCTCAGTCATCATTCAAGCCAAAGCCGAGCAGGAGGAAGAA
TACATCTCAAACACGCTGCTAAAAAAGATTCAGGCCCTCAAAAAGGAGAA
GGAGACTCTGGCGCACCACTACGAGCGCGAGGAGGAGTGTCTGACCAACG
ATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGGAGAAGTGCAAGCTGGAG
CAGACACTTGAGCAGGAGCAGGAGTGCCTCGTCAACAAGCTTATGCGCAA
GATTGAGAAGCTCCAGGCGGAGACGGACAACAAGCAGACCAATCTCGAGC
AGCTGCGCCGCGAAATGGTCGAGTTGGAGAACACGCTTGAGCAGGAACAG
GAAGCTCTTGTAAACAAGCTGTGGAAGCGCATGGACAAGCTGGAGACCGA
GAAGCGTTCGCTGCAAATCAAGCTGGATCAGCCGGTTTCCGATCCGACTA
CGCCGCGAGACATCACAAACAACGCCCATGCCAATGGTGGCGATACGGCC
ACCAGTTTGAGTGCTCATATCCAGATTCTGCGCTCCGAAGTGCTTCGCTA
TCGCTCCGACCTGGCGAGCGCTCAGAAGGAAGCCACTATCAAAACACAGC
AGTATGCGCAGGAAGAGAAGTCGATTCGCGAGAAAACGCTCGCCTTCAGC
GCAAGCTAAAGCAGGAGGTGGAGCGC
BO10435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PD | 1716 | CG6664-RD | 117..933 | 16..832 | 4085 | 100 | Plus |
| CG6664-PA | 1599 | CG6664-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
| CG6664-PB | 1599 | CG6664-RB | 1..816 | 17..832 | 4080 | 100 | Plus |
| CG6664-PC | 1599 | CG6664-RC | 1..816 | 17..832 | 4080 | 100 | Plus |
| CG6664-PD | 1716 | CG6664-RD | 934..978 | 832..876 | 225 | 100 | Plus |
| CG6664-PA | 1599 | CG6664-RA | 817..861 | 832..876 | 225 | 100 | Plus |
| CG6664-PB | 1599 | CG6664-RB | 817..861 | 832..876 | 225 | 100 | Plus |
| CG6664-PC | 1599 | CG6664-RC | 817..861 | 832..876 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 2603 | CG6664-RC | 440..1301 | 16..876 | 4285 | 99.9 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 389..1250 | 16..876 | 4285 | 99.9 | Plus |
| CG6664-RA | 2482 | CG6664-RA | 319..1180 | 16..876 | 4285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17014251..17014904 | 876..224 | 3220 | 99.8 | Minus |
| 3L | 28110227 | 3L | 17015140..17015257 | 133..16 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 223..133 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:32:58 has no hits.
BO10435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:49 Download gff for
BO10435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 106..978 | 3..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:49 Download gff for
BO10435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 106..978 | 3..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:32 Download gff for
BO10435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RB | 380..1250 | 5..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:18 Download gff for
BO10435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 308..1180 | 3..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:18 Download gff for
BO10435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17014251..17014904 | 224..876 | 99 | <- | Minus |
| 3L | 17014987..17015077 | 133..223 | 100 | <- | Minus |
| 3L | 17015141..17015268 | 3..132 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:32 Download gff for
BO10435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17007351..17008004 | 224..876 | 99 | <- | Minus |
| arm_3L | 17008087..17008177 | 133..223 | 100 | <- | Minus |
| arm_3L | 17008241..17008368 | 3..132 | 96 | | Minus |
BO10435.complete Sequence
1630 bp (1630 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ638672
> BO10435.complete
GAAGTTATCAGTCGACATGGAAAGTCCCTGTGAATCCGAAAGTTCGCTGG
ACGGTGGCACCATGCTGCCACCAAGCCCAGTTTCCCGGGAGCAACTCCAG
AAGAGGATCGAATCGCTCACCCAGCAGAACAAGGTGCTGAAAGCCGAACT
GGATACCTTCAAGACCAAGTGCAAAGTGGTGCAAGAGGAGAATCGCTGCC
TCAAGCAAGCCTCAGTCATCATTCAAGCCAAAGCCGAGCAGGAGGAAGAA
TACATCTCAAACACGCTGCTAAAAAAGATTCAGGCCCTCAAAAAGGAGAA
GGAGACTCTGGCGCACCACTACGAGCGCGAGGAGGAGTGTCTGACCAACG
ATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGGAGAAGTGCAAGCTGGAG
CAGACACTTGAGCAGGAGCAGGAGTGCCTCGTCAACAAGCTTATGCGCAA
GATTGAGAAGCTCCAGGCGGAGACGGACAACAAGCAGACCAATCTCGAGC
AGCTGCGCCGCGAAATGGTCGAGTTGGAGAACACGCTTGAGCAGGAACAG
GAAGCTCTTGTAAACAAGCTGTGGAAGCGCATGGACAAGCTGGAGACCGA
GAAGCGTTCGCTGCAAATCAAGCTGGATCAGCCGGTTTCCGATCCGACTA
CGCCGCGAGACATCACAAACAACGCCCATGCCAATGGTGGCGATACGGCC
ACCAGTTTGAGTGCTCATATCCAGATTCTGCGCTCCGAAGTGCTTCGCTA
TCGCTCCGACCTGGCGAGCGCTCAGAAGGAAGCCACTATCAAAACACAGC
AGTATGCGCAGGAAGAGAAGTCGATTCGCGAGGAAAACGCTCGCCTTCAG
CGCAAGCTAAAGCAGGAGGTGGAGCGCCGCGAAGCCCTATGCCGGCACCT
CTCCGAATCGGAATCCTCGCTGGAGATGGACGAGGAACGCTTCTACAACG
AGAACCTGATGGGAGGCGGTTCGTTCGCTGTAGCGACGGCAGCAGCCGCC
GCCGCAGCTTCAGCGGTGAGCGCCCAACGTCAACGCACCATCAGCAGTCC
CGTCTCCCACAGTCCCTCGAGTAGCCGACCTCTAAGTCCGGGCACGGCGG
TGCAAAACCGCTGCTATGCCTGCGGCCAGCTAGTGAATCGTCGTGCCAGC
GAACGCTTCATAAAGCCAGCACTGCCAACGCCCATGCTGGGCCTGAACAC
TTCCGCACCGAACGTGCTGACCTCAACCAACCCACTGCTGGGCATTTTGG
GAACCGGCAGCTCCTCATCGTCCGCGTCCGTATCAGCTGGGAATGCCGCT
GGCGGCTTTCTCTCGAATCTGGGAGGCGAACGCCTAAGCCTTGGCTCGTC
AAATTCGGCTGGCGGCAGTGCCACCTTCTTGGCCGGCGGTGGAGGTGGAG
GTCTGCTGGCCCAGCTCACTAGCCACTCCAGCGCTTCGTCGTCGTCGTCC
AATTTGATGAACATCAGCCTGAACAACTCGTCCAGCGGCAATCTTGTTAA
CAGCAGCAGCAACTCCTCACTGTCGGCGTTTACGCCAACCAATCCGCCCA
GCTCGGCGGCCACGGCCTTTATCCAGCCAGCCAGTCCAATGGACACGTCC
ACCTGCAAGGACGCAAGCTTTCTAGACCAT
BO10435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 1599 | CG6664-PC | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| CG6664-RB | 1599 | CG6664-PB | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| CG6664-RA | 1599 | CG6664-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 2603 | CG6664-RC | 440..2036 | 16..1612 | 7985 | 100 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 389..1985 | 16..1612 | 7985 | 100 | Plus |
| CG6664-RA | 2482 | CG6664-RA | 319..1915 | 16..1612 | 7985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17013993..17014904 | 1135..224 | 4560 | 100 | Minus |
| 3L | 28110227 | 3L | 17013453..17013930 | 1612..1135 | 2390 | 100 | Minus |
| 3L | 28110227 | 3L | 17015140..17015257 | 133..16 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 223..133 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:47:16 has no hits.
BO10435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:53 Download gff for
BO10435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RD | 106..1716 | 3..1613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:21 Download gff for
BO10435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RC | 436..2036 | 9..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:53 Download gff for
BO10435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RB | 390..1985 | 17..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:53 Download gff for
BO10435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RC | 436..2036 | 9..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:09 Download gff for
BO10435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 320..1915 | 17..1614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:09 Download gff for
BO10435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17013451..17013929 | 1136..1614 | 99 | <- | Minus |
| 3L | 17013993..17014904 | 224..1135 | 100 | <- | Minus |
| 3L | 17014987..17015077 | 133..223 | 100 | <- | Minus |
| 3L | 17015141..17015256 | 17..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:53 Download gff for
BO10435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17006551..17007029 | 1136..1614 | 99 | <- | Minus |
| arm_3L | 17007093..17008004 | 224..1135 | 100 | <- | Minus |
| arm_3L | 17008087..17008177 | 133..223 | 100 | <- | Minus |
| arm_3L | 17008241..17008356 | 17..132 | 100 | | Minus |
BO10435.pep Sequence
Translation from 16 to 1630
> BO10435.pep
MESPCESESSLDGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKT
KCKVVQEENRCLKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAH
HYEREEECLTNDLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQ
AETDNKQTNLEQLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQ
IKLDQPVSDPTTPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLA
SAQKEATIKTQQYAQEEKSIREENARLQRKLKQEVERREALCRHLSESES
SLEMDEERFYNENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSP
SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNV
LTSTNPLLGILGTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGG
SATFLAGGGGGGLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNS
SLSAFTPTNPPSSAATAFIQPASPMDTSTCKDASFLDH
BO10435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PC | 532 | CG6664-PC | 1..532 | 1..532 | 2647 | 100 | Plus |
| CG6664-PB | 532 | CG6664-PB | 1..532 | 1..532 | 2647 | 100 | Plus |
| CG6664-PA | 532 | CG6664-PA | 1..532 | 1..532 | 2647 | 100 | Plus |
