Clone Sequence Records
BO10436.3prime Sequence
878 bp (793 high quality bases) assembled on 2006-04-19
> BO10436.3prime
ATGGTCTAGAAAGCTTGCATTCTTGAACTGAAAAACGAGTATCAAGATGA
TGGCCAGCAGCACGGCGCTCAGGATGCCCACCAAAATAAGCTTCTTCTTG
CGCACTTTGTTCCTGTAAGAGCTCGCCTTGCGCAGATTTTCCGTGCCCTG
CGAGACAAAAATGCTAGTCTGTTCCACCTGCGACTCGATGGAGTCCACCG
TCAGTCCCTGCTCGTAGACCAGGGCGCCAAGCTTCTTGTATATCTCGTTC
ACGCCCACGATGTTGTTCTCCAACTCCCGTATGACCTGCTCCTGTTCCTC
GAGGGCCTGCAGGTCCGCCTGCTCCTCCATCTGAGTCTGCATCTGTTGCT
GGTTTGATTTGCGATTGAAGAAGTTGTCCTCGAAGAAGGAGTTGTTGTCC
TGCTGGCTGGCGCTACTGTTGGAGCTGCCGGTACGCGATGAGCCGGGTGG
ACGGGCGATGTTGTAGCTATCTCCGCGCGCCTGCCGCAACGCCGTCTTCT
CTATGTCCGCCGTCTTGCGCTGAACAGACTGGAAGGCGGTCAGTGCCGCC
GTGAACTCGTCCACGAGCCTATCCCGCTGGATCTTCAGGTGGCGCTCCTT
GCACTTGTCCACCTCGTTGATTTGATTGTTTGTGTCGGTCACCAGCTGGT
TGGTGTAGGTCATTATTTGGTGGAGCTGCTTCTTGAGCTCCGGAGAATCT
TGGGGCGTGTTCAGTTGATTGACCATGCGCTGCATCGTGGACACATTCTG
CTGCACCTTCTGGATGCTGGTGGCTATAATCTGGGCCAGCCTTTGGAAAT
CTATTTCGCTTAGGCCACCTCCTCCCCCGCCGCTTAGACCATTCTCCATA
TGCTGTAAGTCCATGTCGACTGATAACT
BO10436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5081-PB | 849 | Syx7-RB | 1..846 | 864..19 | 4230 | 100 | Minus |
CG5081-PA | 849 | Syx7-RA | 1..846 | 864..19 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx7-RB | 1610 | CG5081-RB | 284..1130 | 865..19 | 4235 | 100 | Minus |
Syx7-RA | 1573 | CG5081-RA | 247..1093 | 865..19 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21447079..21447497 | 530..112 | 2095 | 100 | Minus |
3L | 28110227 | 3L | 21446863..21447007 | 673..529 | 725 | 100 | Minus |
3L | 28110227 | 3L | 21446254..21446375 | 865..744 | 610 | 100 | Minus |
3L | 28110227 | 3L | 21447555..21447648 | 112..19 | 470 | 100 | Minus |
3L | 28110227 | 3L | 21446442..21446512 | 744..674 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:39:37 has no hits.
BO10436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:50 Download gff for
BO10436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-PA | 1..849 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:50 Download gff for
BO10436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5081-PA | 1..849 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:51:30 Download gff for
BO10436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-RA | 247..1103 | 9..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:43 Download gff for
BO10436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-RA | 247..1103 | 9..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:43 Download gff for
BO10436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21446254..21446375 | 744..865 | 100 | -> | Minus |
3L | 21446443..21446512 | 674..743 | 100 | -> | Minus |
3L | 21446863..21447007 | 529..673 | 100 | -> | Minus |
3L | 21447081..21447497 | 112..528 | 100 | -> | Minus |
3L | 21447556..21447658 | 9..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:51:30 Download gff for
BO10436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21439354..21439475 | 744..865 | 100 | -> | Minus |
arm_3L | 21439543..21439612 | 674..743 | 100 | -> | Minus |
arm_3L | 21439963..21440107 | 529..673 | 100 | -> | Minus |
arm_3L | 21440181..21440597 | 112..528 | 100 | -> | Minus |
arm_3L | 21440656..21440758 | 9..111 | 96 | | Minus |
BO10436.5prime Sequence
878 bp (783 high quality bases) assembled on 2006-04-19
> BO10436.5prime
GAAGTTATCAGTCGACATGGACTTACAGCATATGGAGAATGGTCTAAGCG
GCGGGGGAGGAGGTGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAG
ATTATAGCCACCAGCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCA
GCGCATGGTCAATCAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGA
AGCAGCTCCACCAAATAATGACCTACACCAACCAGCTGGTGACCGACACA
AACAATCAAATCAACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGAT
CCAGCGGGATAGGCTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCC
AGTCTGTTCAGCGCAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAG
GCGCGCGGAGATAGCTACAACATCGCCCGTCCACCCGGCTCATCGCGTAC
CGGCAGCTCCAACAGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCG
AGGACAACTTCTTCAATCGCAAATCAAACCAGCAACAGATGCAGACTCAG
ATGGAGGAGCAGGCGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCAT
ACGGGAGTTGGAGAACAACATCGTGGGCGTGAACGAGATATACAAGAAGC
TTGGCGCCCTGGTCTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCG
CAGGTGGAACAGACTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCG
CAAGGCGAGCTCTTACAGGAACAAAGTGCGCAAGAAGAAGCTTATTTTGG
TGGGCATCCTGAGCGCCGTGCTGCTGGCCATCATCTTGATACTCGTTTTT
CAGTTCAAGAATGCAAGCTTTCTAGACC
BO10436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5081-PB | 849 | Syx7-RB | 1..846 | 17..862 | 4230 | 100 | Plus |
CG5081-PA | 849 | Syx7-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx7-RB | 1610 | CG5081-RB | 284..1130 | 16..862 | 4235 | 100 | Plus |
Syx7-RA | 1573 | CG5081-RA | 247..1093 | 16..862 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21447079..21447497 | 351..769 | 2095 | 100 | Plus |
3L | 28110227 | 3L | 21446863..21447007 | 208..352 | 725 | 100 | Plus |
3L | 28110227 | 3L | 21446254..21446375 | 16..137 | 610 | 100 | Plus |
3L | 28110227 | 3L | 21447555..21447648 | 769..862 | 470 | 100 | Plus |
3L | 28110227 | 3L | 21446442..21446512 | 137..207 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:23:56 has no hits.
BO10436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:51 Download gff for
BO10436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-PA | 1..849 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:52 Download gff for
BO10436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5081-PA | 1..849 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:10 Download gff for
BO10436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-RA | 247..1103 | 16..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:55 Download gff for
BO10436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-RA | 247..1103 | 16..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:55 Download gff for
BO10436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21446254..21446375 | 16..137 | 100 | -> | Plus |
3L | 21446443..21446512 | 138..207 | 100 | -> | Plus |
3L | 21446863..21447007 | 208..352 | 100 | -> | Plus |
3L | 21447081..21447497 | 353..769 | 100 | -> | Plus |
3L | 21447556..21447658 | 770..872 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:10 Download gff for
BO10436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21439354..21439475 | 16..137 | 100 | -> | Plus |
arm_3L | 21439543..21439612 | 138..207 | 100 | -> | Plus |
arm_3L | 21439963..21440107 | 208..352 | 100 | -> | Plus |
arm_3L | 21440181..21440597 | 353..769 | 100 | -> | Plus |
arm_3L | 21440656..21440758 | 770..872 | 96 | | Plus |
BO10436.complete Sequence
880 bp (880 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631755
> BO10436.complete
GAAGTTATCAGTCGACATGGACTTACAGCATATGGAGAATGGTCTAAGCG
GCGGGGGAGGAGGTGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAG
ATTATAGCCACCAGCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCA
GCGCATGGTCAATCAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGA
AGCAGCTCCACCAAATAATGACCTACACCAACCAGCTGGTGACCGACACA
AACAATCAAATCAACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGAT
CCAGCGGGATAGGCTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCC
AGTCTGTTCAGCGCAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAG
GCGCGCGGAGATAGCTACAACATCGCCCGTCCACCCGGCTCATCGCGTAC
CGGCAGCTCCAACAGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCG
AGGACAACTTCTTCAATCGCAAATCAAACCAGCAACAGATGCAGACTCAG
ATGGAGGAGCAGGCGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCAT
ACGGGAGTTGGAGAACAACATCGTGGGCGTGAACGAGATATACAAGAAGC
TTGGCGCCCTGGTCTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCG
CAGGTGGAACAGACTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCG
CAAGGCGAGCTCTTACAGGAACAAAGTGCGCAAGAAGAAGCTTATTTTGG
TGGGCATCCTGAGCGCCGTGCTGCTGGCCATCATCTTGATACTCGTTTTT
CAGTTCAAGAATGCAAGCTTTCTAGACCAT
BO10436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx7-RB | 849 | CG5081-PB | 1..846 | 17..862 | 4230 | 100 | Plus |
Syx7-RA | 849 | CG5081-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx7-RB | 1610 | CG5081-RB | 284..1130 | 16..862 | 4235 | 100 | Plus |
Syx7-RA | 1573 | CG5081-RA | 247..1093 | 16..862 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21447079..21447497 | 351..769 | 2095 | 100 | Plus |
3L | 28110227 | 3L | 21446863..21447007 | 208..352 | 725 | 100 | Plus |
3L | 28110227 | 3L | 21446254..21446375 | 16..137 | 610 | 100 | Plus |
3L | 28110227 | 3L | 21447555..21447648 | 769..862 | 470 | 100 | Plus |
3L | 28110227 | 3L | 21446442..21446512 | 137..207 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:59:08 has no hits.
BO10436.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:52 Download gff for
BO10436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-RB | 1..849 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:27 Download gff for
BO10436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-RB | 296..1152 | 16..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:05 Download gff for
BO10436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-RA | 248..1093 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:52 Download gff for
BO10436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-RB | 296..1152 | 16..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:22 Download gff for
BO10436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx7-RA | 248..1093 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:22 Download gff for
BO10436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21446255..21446375 | 17..137 | 100 | -> | Plus |
3L | 21446443..21446512 | 138..207 | 100 | -> | Plus |
3L | 21446863..21447007 | 208..352 | 100 | -> | Plus |
3L | 21447081..21447497 | 353..769 | 100 | -> | Plus |
3L | 21447556..21447648 | 770..864 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:05 Download gff for
BO10436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21439355..21439475 | 17..137 | 100 | -> | Plus |
arm_3L | 21439543..21439612 | 138..207 | 100 | -> | Plus |
arm_3L | 21439963..21440107 | 208..352 | 100 | -> | Plus |
arm_3L | 21440181..21440597 | 353..769 | 100 | -> | Plus |
arm_3L | 21440656..21440748 | 770..864 | 97 | | Plus |
BO10436.pep Sequence
Translation from 16 to 880
> BO10436.pep
MDLQHMENGLSGGGGGGLSEIDFQRLAQIIATSIQKVQQNVSTMQRMVNQ
LNTPQDSPELKKQLHQIMTYTNQLVTDTNNQINEVDKCKERHLKIQRDRL
VDEFTAALTAFQSVQRKTADIEKTALRQARGDSYNIARPPGSSRTGSSNS
SASQQDNNSFFEDNFFNRKSNQQQMQTQMEEQADLQALEEQEQVIRELEN
NIVGVNEIYKKLGALVYEQGLTVDSIESQVEQTSIFVSQGTENLRKASSY
RNKVRKKKLILVGILSAVLLAIILILVFQFKNASFLDH
BO10436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx7-PB | 282 | CG5081-PB | 1..282 | 1..282 | 1398 | 100 | Plus |
Syx7-PA | 282 | CG5081-PA | 1..282 | 1..282 | 1398 | 100 | Plus |
Syx13-PB | 284 | CG11278-PB | 35..274 | 11..274 | 271 | 25.8 | Plus |
Syx13-PA | 284 | CG11278-PA | 35..274 | 11..274 | 271 | 25.8 | Plus |
Syx16-PA | 352 | CG1467-PA | 206..348 | 132..277 | 191 | 34.2 | Plus |