Clone BO10436 Report

Search the DGRC for BO10436

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptSyx7-RA
Protein status:BO10436.pep: validated full length
Sequenced Size:880

Clone Sequence Records

BO10436.3prime Sequence

878 bp (793 high quality bases) assembled on 2006-04-19

> BO10436.3prime
ATGGTCTAGAAAGCTTGCATTCTTGAACTGAAAAACGAGTATCAAGATGA
TGGCCAGCAGCACGGCGCTCAGGATGCCCACCAAAATAAGCTTCTTCTTG
CGCACTTTGTTCCTGTAAGAGCTCGCCTTGCGCAGATTTTCCGTGCCCTG
CGAGACAAAAATGCTAGTCTGTTCCACCTGCGACTCGATGGAGTCCACCG
TCAGTCCCTGCTCGTAGACCAGGGCGCCAAGCTTCTTGTATATCTCGTTC
ACGCCCACGATGTTGTTCTCCAACTCCCGTATGACCTGCTCCTGTTCCTC
GAGGGCCTGCAGGTCCGCCTGCTCCTCCATCTGAGTCTGCATCTGTTGCT
GGTTTGATTTGCGATTGAAGAAGTTGTCCTCGAAGAAGGAGTTGTTGTCC
TGCTGGCTGGCGCTACTGTTGGAGCTGCCGGTACGCGATGAGCCGGGTGG
ACGGGCGATGTTGTAGCTATCTCCGCGCGCCTGCCGCAACGCCGTCTTCT
CTATGTCCGCCGTCTTGCGCTGAACAGACTGGAAGGCGGTCAGTGCCGCC
GTGAACTCGTCCACGAGCCTATCCCGCTGGATCTTCAGGTGGCGCTCCTT
GCACTTGTCCACCTCGTTGATTTGATTGTTTGTGTCGGTCACCAGCTGGT
TGGTGTAGGTCATTATTTGGTGGAGCTGCTTCTTGAGCTCCGGAGAATCT
TGGGGCGTGTTCAGTTGATTGACCATGCGCTGCATCGTGGACACATTCTG
CTGCACCTTCTGGATGCTGGTGGCTATAATCTGGGCCAGCCTTTGGAAAT
CTATTTCGCTTAGGCCACCTCCTCCCCCGCCGCTTAGACCATTCTCCATA
TGCTGTAAGTCCATGTCGACTGATAACT

BO10436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5081-PB 849 Syx7-RB 1..846 864..19 4230 100 Minus
CG5081-PA 849 Syx7-RA 1..846 864..19 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
Syx7-RB 1610 CG5081-RB 284..1130 865..19 4235 100 Minus
Syx7-RA 1573 CG5081-RA 247..1093 865..19 4235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21447079..21447497 530..112 2095 100 Minus
3L 28110227 3L 21446863..21447007 673..529 725 100 Minus
3L 28110227 3L 21446254..21446375 865..744 610 100 Minus
3L 28110227 3L 21447555..21447648 112..19 470 100 Minus
3L 28110227 3L 21446442..21446512 744..674 355 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:39:37 has no hits.

BO10436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:50 Download gff for BO10436.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx7-PA 1..849 18..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:50 Download gff for BO10436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5081-PA 1..849 18..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:51:30 Download gff for BO10436.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 247..1103 9..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:43 Download gff for BO10436.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 247..1103 9..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:43 Download gff for BO10436.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21446254..21446375 744..865 100 -> Minus
3L 21446443..21446512 674..743 100 -> Minus
3L 21446863..21447007 529..673 100 -> Minus
3L 21447081..21447497 112..528 100 -> Minus
3L 21447556..21447658 9..111 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:51:30 Download gff for BO10436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21439354..21439475 744..865 100 -> Minus
arm_3L 21439543..21439612 674..743 100 -> Minus
arm_3L 21439963..21440107 529..673 100 -> Minus
arm_3L 21440181..21440597 112..528 100 -> Minus
arm_3L 21440656..21440758 9..111 96   Minus

BO10436.5prime Sequence

878 bp (783 high quality bases) assembled on 2006-04-19

> BO10436.5prime
GAAGTTATCAGTCGACATGGACTTACAGCATATGGAGAATGGTCTAAGCG
GCGGGGGAGGAGGTGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAG
ATTATAGCCACCAGCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCA
GCGCATGGTCAATCAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGA
AGCAGCTCCACCAAATAATGACCTACACCAACCAGCTGGTGACCGACACA
AACAATCAAATCAACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGAT
CCAGCGGGATAGGCTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCC
AGTCTGTTCAGCGCAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAG
GCGCGCGGAGATAGCTACAACATCGCCCGTCCACCCGGCTCATCGCGTAC
CGGCAGCTCCAACAGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCG
AGGACAACTTCTTCAATCGCAAATCAAACCAGCAACAGATGCAGACTCAG
ATGGAGGAGCAGGCGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCAT
ACGGGAGTTGGAGAACAACATCGTGGGCGTGAACGAGATATACAAGAAGC
TTGGCGCCCTGGTCTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCG
CAGGTGGAACAGACTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCG
CAAGGCGAGCTCTTACAGGAACAAAGTGCGCAAGAAGAAGCTTATTTTGG
TGGGCATCCTGAGCGCCGTGCTGCTGGCCATCATCTTGATACTCGTTTTT
CAGTTCAAGAATGCAAGCTTTCTAGACC

BO10436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5081-PB 849 Syx7-RB 1..846 17..862 4230 100 Plus
CG5081-PA 849 Syx7-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Syx7-RB 1610 CG5081-RB 284..1130 16..862 4235 100 Plus
Syx7-RA 1573 CG5081-RA 247..1093 16..862 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21447079..21447497 351..769 2095 100 Plus
3L 28110227 3L 21446863..21447007 208..352 725 100 Plus
3L 28110227 3L 21446254..21446375 16..137 610 100 Plus
3L 28110227 3L 21447555..21447648 769..862 470 100 Plus
3L 28110227 3L 21446442..21446512 137..207 355 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:23:56 has no hits.

BO10436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:51 Download gff for BO10436.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx7-PA 1..849 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:52 Download gff for BO10436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5081-PA 1..849 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:10 Download gff for BO10436.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 247..1103 16..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:55 Download gff for BO10436.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 247..1103 16..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:55 Download gff for BO10436.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21446254..21446375 16..137 100 -> Plus
3L 21446443..21446512 138..207 100 -> Plus
3L 21446863..21447007 208..352 100 -> Plus
3L 21447081..21447497 353..769 100 -> Plus
3L 21447556..21447658 770..872 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:10 Download gff for BO10436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21439354..21439475 16..137 100 -> Plus
arm_3L 21439543..21439612 138..207 100 -> Plus
arm_3L 21439963..21440107 208..352 100 -> Plus
arm_3L 21440181..21440597 353..769 100 -> Plus
arm_3L 21440656..21440758 770..872 96   Plus

BO10436.complete Sequence

880 bp (880 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631755

> BO10436.complete
GAAGTTATCAGTCGACATGGACTTACAGCATATGGAGAATGGTCTAAGCG
GCGGGGGAGGAGGTGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAG
ATTATAGCCACCAGCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCA
GCGCATGGTCAATCAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGA
AGCAGCTCCACCAAATAATGACCTACACCAACCAGCTGGTGACCGACACA
AACAATCAAATCAACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGAT
CCAGCGGGATAGGCTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCC
AGTCTGTTCAGCGCAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAG
GCGCGCGGAGATAGCTACAACATCGCCCGTCCACCCGGCTCATCGCGTAC
CGGCAGCTCCAACAGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCG
AGGACAACTTCTTCAATCGCAAATCAAACCAGCAACAGATGCAGACTCAG
ATGGAGGAGCAGGCGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCAT
ACGGGAGTTGGAGAACAACATCGTGGGCGTGAACGAGATATACAAGAAGC
TTGGCGCCCTGGTCTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCG
CAGGTGGAACAGACTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCG
CAAGGCGAGCTCTTACAGGAACAAAGTGCGCAAGAAGAAGCTTATTTTGG
TGGGCATCCTGAGCGCCGTGCTGCTGGCCATCATCTTGATACTCGTTTTT
CAGTTCAAGAATGCAAGCTTTCTAGACCAT

BO10436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Syx7-RB 849 CG5081-PB 1..846 17..862 4230 100 Plus
Syx7-RA 849 CG5081-PA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Syx7-RB 1610 CG5081-RB 284..1130 16..862 4235 100 Plus
Syx7-RA 1573 CG5081-RA 247..1093 16..862 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21447079..21447497 351..769 2095 100 Plus
3L 28110227 3L 21446863..21447007 208..352 725 100 Plus
3L 28110227 3L 21446254..21446375 16..137 610 100 Plus
3L 28110227 3L 21447555..21447648 769..862 470 100 Plus
3L 28110227 3L 21446442..21446512 137..207 355 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:59:08 has no hits.

BO10436.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:52 Download gff for BO10436.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RB 1..849 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:27 Download gff for BO10436.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RB 296..1152 16..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:05 Download gff for BO10436.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 248..1093 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:52 Download gff for BO10436.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RB 296..1152 16..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:22 Download gff for BO10436.complete
Subject Subject Range Query Range Percent Splice Strand
Syx7-RA 248..1093 17..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:22 Download gff for BO10436.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21446255..21446375 17..137 100 -> Plus
3L 21446443..21446512 138..207 100 -> Plus
3L 21446863..21447007 208..352 100 -> Plus
3L 21447081..21447497 353..769 100 -> Plus
3L 21447556..21447648 770..864 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:05 Download gff for BO10436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21439355..21439475 17..137 100 -> Plus
arm_3L 21439543..21439612 138..207 100 -> Plus
arm_3L 21439963..21440107 208..352 100 -> Plus
arm_3L 21440181..21440597 353..769 100 -> Plus
arm_3L 21440656..21440748 770..864 97   Plus

BO10436.pep Sequence

Translation from 16 to 880

> BO10436.pep
MDLQHMENGLSGGGGGGLSEIDFQRLAQIIATSIQKVQQNVSTMQRMVNQ
LNTPQDSPELKKQLHQIMTYTNQLVTDTNNQINEVDKCKERHLKIQRDRL
VDEFTAALTAFQSVQRKTADIEKTALRQARGDSYNIARPPGSSRTGSSNS
SASQQDNNSFFEDNFFNRKSNQQQMQTQMEEQADLQALEEQEQVIRELEN
NIVGVNEIYKKLGALVYEQGLTVDSIESQVEQTSIFVSQGTENLRKASSY
RNKVRKKKLILVGILSAVLLAIILILVFQFKNASFLDH

BO10436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Syx7-PB 282 CG5081-PB 1..282 1..282 1398 100 Plus
Syx7-PA 282 CG5081-PA 1..282 1..282 1398 100 Plus
Syx13-PB 284 CG11278-PB 35..274 11..274 271 25.8 Plus
Syx13-PA 284 CG11278-PA 35..274 11..274 271 25.8 Plus
Syx16-PA 352 CG1467-PA 206..348 132..277 191 34.2 Plus