Clone Sequence Records
BO10438.3prime Sequence
929 bp (801 high quality bases) assembled on 2006-04-19
> BO10438.3prime
ATGGTCTAGAAAGCTTGCGTCGAACTTCTCCTGGTTGGGCATACAGATGA
AGAATTTGGAGCACCACAGGTTGATCGCCTGCGAAGTGTCCGCCAGCCAT
TTGACCGGTTTGTGGATGGTCAGGTAGTAGACCGGAATTCCAGACAGTAT
AATGATCGTCCCGATTCCTACCACATATGGCGTCTGCGTGCAAGAGAAGA
TGACCAGGAACAGGCAGACGATCAGATAGATGATGGGCAGCGCCAAGTTG
ACCTTGATGGGTCGCTCCGTCTTGGGTTGCTTGTAGCGCATCCACAGCAG
TCCGGATACCGAGATCAGCGTGAACAACGCCTCCACGTAGCTGACGTAGT
TGATTAGTACGTAGACGTCCTCGATGAACAGCAGCAGCAAGGTGAGCACG
CCCAGGAATATCAGCGAGGGCACAGGTGTCAGGCAATTAACGTTAATCAG
CGAAATGGCGGCCGGCAGGTGACCATTCCTTGCACCGACGAAGAAAAGTC
GCGAGGACGCGAAGATCGCTCCATTCAGCGAACCAAAAGTGGAGCAGGCC
ACAGCGAAGGGCATAATCCAGGACATATACCCCAGCATCTTGTCGCCAAA
CGTGACTGCCACTGCATCTGACGAAAGGATCTCGTCTGGCGAGAGAACCG
AAAAGTATGCAATATTCGTGATCATATAGATGACCGTGACCACCGGCATT
GAGATGCAAATGGCCTTGGGCAGGTTTCGGTACGGATCCTTGAGCTCCTC
TGTTACAAAGTTCAAATAGTTCCAGCCGGAGTACGAGAAGAGGCCGCTAT
AGAAGGCCAGGGCTATATATCCAGGATCTTGAAGGCCTCCCGAGAAGGGA
TTATCCCAGTGCTCTGTGTTTTCATCGAACAACCACCAGACTCCGGCGCC
AACAATCACCAGGAGGGCAACCACCTTGG
BO10438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3297-PC | 1500 | mnd-RC | 587..1497 | 929..19 | 4505 | 99.7 | Minus |
| CG3297-PA | 1500 | mnd-RA | 587..1497 | 929..19 | 4505 | 99.7 | Minus |
| CG3297-PB | 1566 | mnd-RB | 653..1563 | 929..19 | 4505 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-RD | 2046 | CG3297-RD | 682..1592 | 929..19 | 4525 | 99.8 | Minus |
| mnd-RA | 2491 | CG3297-RA | 1127..2037 | 929..19 | 4525 | 99.8 | Minus |
| mnd-RC | 2376 | CG3297-RC | 1012..1922 | 929..19 | 4525 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14990215..14990742 | 929..402 | 2610 | 99.6 | Minus |
| 3L | 28110227 | 3L | 14990829..14991213 | 403..19 | 1925 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:57:05 has no hits.
BO10438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:54 Download gff for
BO10438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-PC | 587..1500 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:56 Download gff for
BO10438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3297-PB | 653..1566 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:38:30 Download gff for
BO10438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RA | 1127..2037 | 19..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:10 Download gff for
BO10438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 1012..1922 | 19..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:10 Download gff for
BO10438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14990215..14990741 | 403..929 | 99 | -> | Minus |
| 3L | 14990830..14991213 | 19..402 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:38:30 Download gff for
BO10438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14983315..14983841 | 403..929 | 99 | -> | Minus |
| arm_3L | 14983930..14984313 | 19..402 | 100 | | Minus |
BO10438.5prime Sequence
705 bp (702 high quality bases) assembled on 2006-04-19
> BO10438.5prime
GAAGTTATCAGTCGACATGGCGCGAGTTCAGGCCAGCGACTCGTTGATTC
CCCGCCAGGTGTTCGAGGTTCCTCCGGCGGAACCCAATAATTCCACGGCG
GACAGCGGCAGTCAGGGTTCCGGGGTAAAGCTAAAGAAGCAGATCGGCCT
GCTCGATGGAGTGGCCATCATCGTTGGTGTAATTGTCGGATCCGGCATCT
TCGTGAGTCCCAAGGGAGTGCTCAAGTTCTCCGGCTCCATAGGACAATCC
CTCATCGTTTGGGTCCTCAGCGGAGTGCTCAGCATGGTGGGCGCCCTATG
CTACGCCGAATTGGGCACGATGATACCCAAATCAGGCGGAGATTATGCCT
ATATAGGCACTGCATTTGGTCCTCTGCCTGCGTTCCTTTATCTGTGGGTG
GCCCTGCTGATCCTGGTGCCCACGGGCAATGCGATTACGGCTCTGACTTT
TGCCATATATCTGCTGAAACCTTTTTGGCCTTCCTGCGACGCGCCCATTG
AAGCTGTTCAGCTGCTGGCGGCTGCCATGATATGTGTGCTGACGCTTATC
AATTGCTATAATGTTAAGTGGGTTACGCGTGTGACGGACATCTTTACGGG
CACCAAGGTGGTTGCCCTCCTGGTGATCGTTGGCGCCGGAGTCTGGTGGT
TGTTCGATGGAAACACAGAGCACTGGGATAATCCCTTCTCGGGAGGCCTT
CAAGA
BO10438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3297-PC | 1500 | mnd-RC | 1..689 | 17..705 | 3445 | 100 | Plus |
| CG3297-PA | 1500 | mnd-RA | 1..689 | 17..705 | 3445 | 100 | Plus |
| CG3297-PB | 1566 | mnd-RB | 67..755 | 17..705 | 3445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-RD | 2046 | CG3297-RD | 96..784 | 17..705 | 3445 | 100 | Plus |
| mnd-RA | 2491 | CG3297-RA | 541..1229 | 17..705 | 3445 | 100 | Plus |
| mnd-RC | 2376 | CG3297-RC | 426..1114 | 17..705 | 3445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14987952..14988250 | 17..315 | 1495 | 100 | Plus |
| 3L | 28110227 | 3L | 14989848..14990069 | 314..535 | 1110 | 100 | Plus |
| 3L | 28110227 | 3L | 14990146..14990317 | 534..705 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:23:14 has no hits.
BO10438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:55 Download gff for
BO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-PC | 1..688 | 17..704 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:57 Download gff for
BO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3297-PB | 67..754 | 17..704 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:32 Download gff for
BO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 426..1113 | 17..704 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:02:31 Download gff for
BO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 426..1113 | 17..704 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:02:31 Download gff for
BO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14987952..14988249 | 17..314 | 100 | -> | Plus |
| 3L | 14989849..14990067 | 315..533 | 100 | -> | Plus |
| 3L | 14990146..14990316 | 534..704 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:32 Download gff for
BO10438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14981052..14981349 | 17..314 | 100 | -> | Plus |
| arm_3L | 14982949..14983167 | 315..533 | 100 | -> | Plus |
| arm_3L | 14983246..14983416 | 534..704 | 100 | | Plus |
BO10438.complete Sequence
1531 bp (1531 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631756
> BO10438.complete
GAAGTTATCAGTCGACATGGCGCGAGTTCAGGCCAGCGACTCGTTGATTC
CCCGCCAGGTGTTCGAGGTTCCTCCGGCGGAACCCAATAATTCCACGGCG
GACAGCGGCAGTCAGGGTTCCGGGGTAAAGCTAAAGAAGCAGATCGGCCT
GCTCGATGGAGTGGCCATCATCGTTGGTGTAATTGTCGGATCCGGCATCT
TCGTGAGTCCCAAGGGAGTGCTCAAGTTCTCCGGCTCCATAGGACAATCC
CTCATCGTTTGGGTCCTCAGCGGAGTGCTCAGCATGGTGGGCGCCCTATG
CTACGCCGAATTGGGCACGATGATACCCAAATCAGGCGGAGATTATGCCT
ATATAGGCACTGCATTTGGTCCTCTGCCTGCGTTCCTTTATCTGTGGGTG
GCCCTGCTGATCCTGGTGCCCACGGGCAATGCGATTACGGCTCTGACTTT
TGCCATATATCTGCTGAAACCTTTTTGGCCTTCCTGCGACGCGCCCATTG
AAGCTGTTCAGCTGCTGGCGGCTGCCATGATATGTGTGCTGACGCTTATC
AATTGCTATAATGTTAAGTGGGTTACGCGTGTGACGGACATCTTTACGGG
CACCAAGGTGGTTGCCCTCCTGGTGATCGTTGGCGCCGGAGTCTGGTGGT
TGTTCGATGGAAACACAGAGCACTGGGATAATCCCTTCTCGGGAGGCCTT
CAAGATCCTGGATATATAGCCCTGGCCTTCTATAGCGGCCTCTTCTCGTA
CTCCGGCTGGAACTATTTGAACTTTGTAACAGAGGAGCTCAAGGATCCGT
ACCGAAACCTGCCCAAGGCCATTTGCATCTCAATGCCGGTGGTCACGGTC
ATCTATATGATCACGAATATTGCATACTTTTCGGTTCTCTCGCCAGACGA
GATCCTTTCGTCAGATGCAGTGGCAGTCACGTTTGGCGACAAGATGCTGG
GGTATATGTCCTGGATTATGCCCTTCGCTGTGGCCTGCTCCACTTTTGGT
TCGCTGAATGGAGCGATCTTCGCGTCCTCGCGACTTTTCTTCGTCGGTGC
AAGGAATGGTCACCTGCCGGCCGCCATTTCGCTGATTAACGTTAATTGCC
TGACACCTGTGCCCTCGCTGATATTCCTGGGCGTGCTCACCTTGCTGCTG
CTGTTCATCGAGGACGTCTACGTACTAATCAACTACGTCAGCTACGTGGA
GGCGTTGTTCACGCTGATCTCGGTATCCGGACTGCTGTGGATGCGCTACA
AGCAACCCAAGACGGAGCGACCCATCAAGGTCAACTTGGCGCTGCCCATC
ATCTATCTGATCGTCTGCCTGTTCCTGGTCATCTTCTCTTGCACGCAGAC
GCCATATGTGGTAGGAATCGGGACGATCATTATACTGTCTGGAATTCCGG
TCTACTACCTGACCATCCACAAACCGGTCAAATGGCTGGCGGACACTTCG
CAGGCGATCAACCTGTGGTGCTCCAAATTCTTCATCTGTATGCCCAACCA
GGAGAAGTTCGACGCAAGCTTTCTAGACCAT
BO10438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-RD | 1500 | CG3297-PD | 1..1497 | 17..1513 | 7485 | 100 | Plus |
| mnd-RA | 1500 | CG3297-PA | 1..1497 | 17..1513 | 7485 | 100 | Plus |
| mnd-RC | 1500 | CG3297-PC | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-RD | 2046 | CG3297-RD | 96..1592 | 17..1513 | 7485 | 100 | Plus |
| mnd-RA | 2491 | CG3297-RA | 541..2037 | 17..1513 | 7485 | 100 | Plus |
| mnd-RC | 2376 | CG3297-RC | 426..1922 | 17..1513 | 7485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14990146..14990742 | 534..1130 | 2985 | 100 | Plus |
| 3L | 28110227 | 3L | 14990829..14991213 | 1129..1513 | 1925 | 100 | Plus |
| 3L | 28110227 | 3L | 14987952..14988250 | 17..315 | 1495 | 100 | Plus |
| 3L | 28110227 | 3L | 14989848..14990069 | 314..535 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:12:20 has no hits.
BO10438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:42 Download gff for
BO10438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RD | 1..1500 | 17..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:08 Download gff for
BO10438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RD | 81..1577 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:46 Download gff for
BO10438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 426..1922 | 17..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:43 Download gff for
BO10438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RD | 81..1577 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:13 Download gff for
BO10438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 426..1922 | 17..1515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:13 Download gff for
BO10438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14987952..14988249 | 17..314 | 100 | -> | Plus |
| 3L | 14989849..14990067 | 315..533 | 100 | -> | Plus |
| 3L | 14990146..14990741 | 534..1129 | 100 | -> | Plus |
| 3L | 14990830..14991213 | 1130..1515 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:46 Download gff for
BO10438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14981052..14981349 | 17..314 | 100 | -> | Plus |
| arm_3L | 14982949..14983167 | 315..533 | 100 | -> | Plus |
| arm_3L | 14983246..14983841 | 534..1129 | 100 | -> | Plus |
| arm_3L | 14983930..14984313 | 1130..1515 | 99 | | Plus |
BO10438.pep Sequence
Translation from 16 to 1531
> BO10438.pep
MARVQASDSLIPRQVFEVPPAEPNNSTADSGSQGSGVKLKKQIGLLDGVA
IIVGVIVGSGIFVSPKGVLKFSGSIGQSLIVWVLSGVLSMVGALCYAELG
TMIPKSGGDYAYIGTAFGPLPAFLYLWVALLILVPTGNAITALTFAIYLL
KPFWPSCDAPIEAVQLLAAAMICVLTLINCYNVKWVTRVTDIFTGTKVVA
LLVIVGAGVWWLFDGNTEHWDNPFSGGLQDPGYIALAFYSGLFSYSGWNY
LNFVTEELKDPYRNLPKAICISMPVVTVIYMITNIAYFSVLSPDEILSSD
AVAVTFGDKMLGYMSWIMPFAVACSTFGSLNGAIFASSRLFFVGARNGHL
PAAISLINVNCLTPVPSLIFLGVLTLLLLFIEDVYVLINYVSYVEALFTL
ISVSGLLWMRYKQPKTERPIKVNLALPIIYLIVCLFLVIFSCTQTPYVVG
IGTIIILSGIPVYYLTIHKPVKWLADTSQAINLWCSKFFICMPNQEKFDA
SFLDH
BO10438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-PD | 499 | CG3297-PD | 1..499 | 1..499 | 2591 | 100 | Plus |
| mnd-PA | 499 | CG3297-PA | 1..499 | 1..499 | 2591 | 100 | Plus |
| mnd-PC | 499 | CG3297-PC | 1..499 | 1..499 | 2591 | 100 | Plus |
| gb-PB | 517 | CG6070-PB | 35..516 | 20..497 | 1334 | 53.6 | Plus |
| gb-PA | 517 | CG6070-PA | 35..516 | 20..497 | 1334 | 53.6 | Plus |
