Clone Sequence Records
BO10441.3prime Sequence
860 bp (847 high quality bases) assembled on 2006-04-19
> BO10441.3prime
ATGGTCTAGAAAGCTTGCCTTGAGCTTCTGCTTGATGGGACTGGGCGAGG
TCTGGTCCGCCTCAGGCAGGTCGCTCTCCTTCTTGCGCTTCACCTTGTCC
TTGGGCGTCTTGGCTGGCTTTTTGGTCTGCAGCGCCAGCTTGGCCTCCCG
CTTGGCCTCCTTCTTGGCCTCGCGCTTGGCGCGCAGCTGCTCCGTGATGA
AGGAGAAGACCAGGTAGCCCTGCAGGGCGATCAGGCCGCCCAAGGCCAGC
AGGGATCGCACACCCCCGATGCCGTAGTACAGCGTGAGCACACCGATCAC
GGACGTAGCGAAGCGGATCAGGAAAAAGACGGCATTGTTCACCACCCGCA
GCTTGGCCAGTCGCTCCTCGCGGTCGAACACGCCGATCAGCTGGAAGACG
TGCGACAGCAGCTCGCTGAAGTAGTGCAGCGTGAGCAGCACGAGGGCCAG
GCGCTGGAAGCTAAGCGTGTAGGCCAGGACGATCAGGGTGAAGCCGCTGA
TCGAGTGCACGATCTTGGGCTGCTGCTCCTCCTTGGTCTTGATCTTCTGG
AAGTAGAGCTCCGGCAGCATGTGTAGGTAGTAGGCCAGCTGCACCACAAA
GTAGAACTTGTGCAGAAAGCTCATGGGATGGTCGGGGAAGCCCTCCCACA
GCTGGGCCACCTGTCCGAGGTAGCCCTCCTTCAGCAGCACGTGGGCGCCC
CAGACGAAGGAGAGCAGGTAGAAGGCCACCAGTTGGCCGGACTCGTTGAA
GCGGGCCAGCTTGAACTTGGACAGGTGTAGTTTTTTGCTGATCTTGTCCA
GCACGAACTCCTGGATGATCGCGTGCATGATTATGCAGGTCAGCGTGTAG
AAGAATATCG
BO10441.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11642-PB | 1107 | CG11642-RB | 263..1104 | 860..19 | 4210 | 100 | Minus |
CG11642-PA | 1107 | CG11642-RA | 263..1104 | 860..19 | 4210 | 100 | Minus |
CG11642-PC | 1107 | CG11642-RC | 263..1104 | 860..19 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-RE | 1656 | CG11642-RE | 445..1286 | 860..19 | 4210 | 100 | Minus |
TRAM-RD | 1623 | CG11642-RD | 412..1253 | 860..19 | 4210 | 100 | Minus |
TRAM-RC | 1896 | CG11642-RC | 685..1526 | 860..19 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 936611..937452 | 860..19 | 4210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:29:20 has no hits.
BO10441.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:59 Download gff for
BO10441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11642-PC | 263..1107 | 16..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:01 Download gff for
BO10441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11642-PC | 263..1107 | 16..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:46:50 Download gff for
BO10441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 685..1533 | 13..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:19 Download gff for
BO10441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 685..1533 | 13..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:19 Download gff for
BO10441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 936611..937459 | 13..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:46:50 Download gff for
BO10441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 830644..831492 | 13..860 | 99 | | Minus |
BO10441.5prime Sequence
930 bp (844 high quality bases) assembled on 2006-04-19
> BO10441.5prime
GAAGTTATCAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCA
GCAACAAGAACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCAC
GCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAA
CGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACG
TCAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACC
TACATCGCCGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGAC
CTGCATAATCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCA
GCAAAAAACTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCC
GGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGT
GCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCT
TCCCCGACCATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAG
CTGGCCTACTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAA
GACCAAGGAGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCA
CCCTGATCGTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTG
CTGCTCACGCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCT
GATCGGCGTGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGA
ACAATGCCGTCTTTTTTCTGATCCGCTTCGCTACGTCCGTGATCGGTGTG
CTCACGCTGTACTACGGCATCGGGGGGTGTGCGATCCCTGCTGGCCTTGG
GCGGCCTGATCGCCCTGCAGGGCTACCTGG
BO10441.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11642-PB | 1107 | CG11642-RB | 1..860 | 17..876 | 4275 | 99.8 | Plus |
CG11642-PA | 1107 | CG11642-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
CG11642-PC | 1107 | CG11642-RC | 1..860 | 17..876 | 4275 | 99.8 | Plus |
CG11642-PB | 1107 | CG11642-RB | 856..913 | 873..930 | 290 | 100 | Plus |
CG11642-PA | 1107 | CG11642-RA | 856..913 | 873..930 | 290 | 100 | Plus |
CG11642-PC | 1107 | CG11642-RC | 856..913 | 873..930 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-RE | 1656 | CG11642-RE | 183..1095 | 17..930 | 4530 | 99.8 | Plus |
TRAM-RD | 1623 | CG11642-RD | 150..1062 | 17..930 | 4530 | 99.8 | Plus |
TRAM-RC | 1896 | CG11642-RC | 423..1335 | 17..930 | 4530 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 936349..937261 | 17..930 | 4505 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:07:23 has no hits.
BO10441.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:00 Download gff for
BO10441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11642-PC | 1..913 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:03 Download gff for
BO10441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11642-PC | 1..913 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:08 Download gff for
BO10441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 419..1335 | 10..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:11 Download gff for
BO10441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 419..1335 | 10..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:11 Download gff for
BO10441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 936345..937261 | 10..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:08 Download gff for
BO10441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 830378..831294 | 10..930 | 99 | | Plus |
BO10441.complete Sequence
1138 bp (1138 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631757
> BO10441.complete
GAAGTTATCAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCA
GCAACAAGAACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCAC
GCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAA
CGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACG
TCAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACC
TACATCGCCGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGAC
CTGCATAATCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCA
GCAAAAAACTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCC
GGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGT
GCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCT
TCCCCGACCATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAG
CTGGCCTACTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAA
GACCAAGGAGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCA
CCCTGATCGTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTG
CTGCTCACGCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCT
GATCGGCGTGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGA
ACAATGCCGTCTTTTTCCTGATCCGCTTCGCTACGTCCGTGATCGGTGTG
CTCACGCTGTACTACGGCATCGGGGGTGTGCGATCCCTGCTGGCCTTGGG
CGGCCTGATCGCCCTGCAGGGCTACCTGGTCTTCTCCTTCATCACGGAGC
AGCTGCGCGCCAAGCGCGAGGCCAAGAAGGAGGCCAAGCGGGAGGCCAAG
CTGGCGCTGCAGACCAAAAAGCCAGCCAAGACGCCCAAGGACAAGGTGAA
GCGCAAGAAGGAGAGCGACCTGCCTGAGGCGGACCAGACCTCGCCCAGTC
CCATCAAGCAGAAGCTCAAGGCAAGCTTTCTAGACCAT
BO10441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-RE | 1107 | CG11642-PE | 1..1104 | 17..1120 | 5520 | 100 | Plus |
TRAM-RD | 1107 | CG11642-PD | 1..1104 | 17..1120 | 5520 | 100 | Plus |
TRAM-RC | 1107 | CG11642-PC | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-RE | 1656 | CG11642-RE | 183..1286 | 17..1120 | 5520 | 100 | Plus |
TRAM-RD | 1623 | CG11642-RD | 150..1253 | 17..1120 | 5520 | 100 | Plus |
TRAM-RC | 1896 | CG11642-RC | 423..1526 | 17..1120 | 5520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 936349..937452 | 17..1120 | 5520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:47:36 has no hits.
BO10441.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:19 Download gff for
BO10441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 1..1107 | 17..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:29 Download gff for
BO10441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 419..1533 | 10..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:47 Download gff for
BO10441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 423..1526 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:19 Download gff for
BO10441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 419..1533 | 10..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:20 Download gff for
BO10441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TRAM-RC | 423..1526 | 17..1122 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:20 Download gff for
BO10441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 936349..937452 | 17..1122 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:47 Download gff for
BO10441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 830382..831485 | 17..1122 | 99 | | Plus |
BO10441.pep Sequence
Translation from 16 to 1138
> BO10441.pep
MAIKPGLGRKTSNKNPPILSHEFVIQNHADIISCVAMVFVVGLMNESTAA
FASAFISLHHNVSGEDPSREQPYGKPYTYIAGIKDYCAIFFYTLTCIIMH
AIIQEFVLDKISKKLHLSKFKLARFNESGQLVAFYLLSFVWGAHVLLKEG
YLGQVAQLWEGFPDHPMSFLHKFYFVVQLAYYLHMLPELYFQKIKTKEEQ
QPKIVHSISGFTLIVLAYTLSFQRLALVLLTLHYFSELLSHVFQLIGVFD
REERLAKLRVVNNAVFFLIRFATSVIGVLTLYYGIGGVRSLLALGGLIAL
QGYLVFSFITEQLRAKREAKKEAKREAKLALQTKKPAKTPKDKVKRKKES
DLPEADQTSPSPIKQKLKASFLDH
BO10441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TRAM-PE | 368 | CG11642-PE | 1..368 | 1..368 | 1876 | 100 | Plus |
TRAM-PD | 368 | CG11642-PD | 1..368 | 1..368 | 1876 | 100 | Plus |
TRAM-PC | 368 | CG11642-PC | 1..368 | 1..368 | 1876 | 100 | Plus |
TRAM-PA | 368 | CG11642-PA | 1..368 | 1..368 | 1876 | 100 | Plus |
TRAM-PB | 368 | CG11642-PB | 1..368 | 1..368 | 1876 | 100 | Plus |