Clone BO10441 Report

Search the DGRC for BO10441

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptTRAM-RA
Protein status:BO10441.pep: validated full length
Sequenced Size:1138

Clone Sequence Records

BO10441.3prime Sequence

860 bp (847 high quality bases) assembled on 2006-04-19

> BO10441.3prime
ATGGTCTAGAAAGCTTGCCTTGAGCTTCTGCTTGATGGGACTGGGCGAGG
TCTGGTCCGCCTCAGGCAGGTCGCTCTCCTTCTTGCGCTTCACCTTGTCC
TTGGGCGTCTTGGCTGGCTTTTTGGTCTGCAGCGCCAGCTTGGCCTCCCG
CTTGGCCTCCTTCTTGGCCTCGCGCTTGGCGCGCAGCTGCTCCGTGATGA
AGGAGAAGACCAGGTAGCCCTGCAGGGCGATCAGGCCGCCCAAGGCCAGC
AGGGATCGCACACCCCCGATGCCGTAGTACAGCGTGAGCACACCGATCAC
GGACGTAGCGAAGCGGATCAGGAAAAAGACGGCATTGTTCACCACCCGCA
GCTTGGCCAGTCGCTCCTCGCGGTCGAACACGCCGATCAGCTGGAAGACG
TGCGACAGCAGCTCGCTGAAGTAGTGCAGCGTGAGCAGCACGAGGGCCAG
GCGCTGGAAGCTAAGCGTGTAGGCCAGGACGATCAGGGTGAAGCCGCTGA
TCGAGTGCACGATCTTGGGCTGCTGCTCCTCCTTGGTCTTGATCTTCTGG
AAGTAGAGCTCCGGCAGCATGTGTAGGTAGTAGGCCAGCTGCACCACAAA
GTAGAACTTGTGCAGAAAGCTCATGGGATGGTCGGGGAAGCCCTCCCACA
GCTGGGCCACCTGTCCGAGGTAGCCCTCCTTCAGCAGCACGTGGGCGCCC
CAGACGAAGGAGAGCAGGTAGAAGGCCACCAGTTGGCCGGACTCGTTGAA
GCGGGCCAGCTTGAACTTGGACAGGTGTAGTTTTTTGCTGATCTTGTCCA
GCACGAACTCCTGGATGATCGCGTGCATGATTATGCAGGTCAGCGTGTAG
AAGAATATCG

BO10441.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11642-PB 1107 CG11642-RB 263..1104 860..19 4210 100 Minus
CG11642-PA 1107 CG11642-RA 263..1104 860..19 4210 100 Minus
CG11642-PC 1107 CG11642-RC 263..1104 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-RE 1656 CG11642-RE 445..1286 860..19 4210 100 Minus
TRAM-RD 1623 CG11642-RD 412..1253 860..19 4210 100 Minus
TRAM-RC 1896 CG11642-RC 685..1526 860..19 4210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 936611..937452 860..19 4210 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:29:20 has no hits.

BO10441.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:59 Download gff for BO10441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11642-PC 263..1107 16..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:01 Download gff for BO10441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11642-PC 263..1107 16..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:46:50 Download gff for BO10441.3prime
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 685..1533 13..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:19 Download gff for BO10441.3prime
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 685..1533 13..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:19 Download gff for BO10441.3prime
Subject Subject Range Query Range Percent Splice Strand
X 936611..937459 13..860 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:46:50 Download gff for BO10441.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 830644..831492 13..860 99   Minus

BO10441.5prime Sequence

930 bp (844 high quality bases) assembled on 2006-04-19

> BO10441.5prime
GAAGTTATCAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCA
GCAACAAGAACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCAC
GCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAA
CGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACG
TCAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACC
TACATCGCCGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGAC
CTGCATAATCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCA
GCAAAAAACTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCC
GGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGT
GCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCT
TCCCCGACCATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAG
CTGGCCTACTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAA
GACCAAGGAGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCA
CCCTGATCGTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTG
CTGCTCACGCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCT
GATCGGCGTGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGA
ACAATGCCGTCTTTTTTCTGATCCGCTTCGCTACGTCCGTGATCGGTGTG
CTCACGCTGTACTACGGCATCGGGGGGTGTGCGATCCCTGCTGGCCTTGG
GCGGCCTGATCGCCCTGCAGGGCTACCTGG

BO10441.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11642-PB 1107 CG11642-RB 1..860 17..876 4275 99.8 Plus
CG11642-PA 1107 CG11642-RA 1..860 17..876 4275 99.8 Plus
CG11642-PC 1107 CG11642-RC 1..860 17..876 4275 99.8 Plus
CG11642-PB 1107 CG11642-RB 856..913 873..930 290 100 Plus
CG11642-PA 1107 CG11642-RA 856..913 873..930 290 100 Plus
CG11642-PC 1107 CG11642-RC 856..913 873..930 290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-RE 1656 CG11642-RE 183..1095 17..930 4530 99.8 Plus
TRAM-RD 1623 CG11642-RD 150..1062 17..930 4530 99.8 Plus
TRAM-RC 1896 CG11642-RC 423..1335 17..930 4530 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 936349..937261 17..930 4505 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 07:07:23 has no hits.

BO10441.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:00 Download gff for BO10441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11642-PC 1..913 17..930 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:03 Download gff for BO10441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11642-PC 1..913 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:08 Download gff for BO10441.5prime
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 419..1335 10..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:11 Download gff for BO10441.5prime
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 419..1335 10..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:11 Download gff for BO10441.5prime
Subject Subject Range Query Range Percent Splice Strand
X 936345..937261 10..930 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:08 Download gff for BO10441.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 830378..831294 10..930 99   Plus

BO10441.complete Sequence

1138 bp (1138 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631757

> BO10441.complete
GAAGTTATCAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCA
GCAACAAGAACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCAC
GCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAA
CGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACG
TCAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACC
TACATCGCCGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGAC
CTGCATAATCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCA
GCAAAAAACTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCC
GGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGT
GCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCT
TCCCCGACCATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAG
CTGGCCTACTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAA
GACCAAGGAGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCA
CCCTGATCGTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTG
CTGCTCACGCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCT
GATCGGCGTGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGA
ACAATGCCGTCTTTTTCCTGATCCGCTTCGCTACGTCCGTGATCGGTGTG
CTCACGCTGTACTACGGCATCGGGGGTGTGCGATCCCTGCTGGCCTTGGG
CGGCCTGATCGCCCTGCAGGGCTACCTGGTCTTCTCCTTCATCACGGAGC
AGCTGCGCGCCAAGCGCGAGGCCAAGAAGGAGGCCAAGCGGGAGGCCAAG
CTGGCGCTGCAGACCAAAAAGCCAGCCAAGACGCCCAAGGACAAGGTGAA
GCGCAAGAAGGAGAGCGACCTGCCTGAGGCGGACCAGACCTCGCCCAGTC
CCATCAAGCAGAAGCTCAAGGCAAGCTTTCTAGACCAT

BO10441.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-RE 1107 CG11642-PE 1..1104 17..1120 5520 100 Plus
TRAM-RD 1107 CG11642-PD 1..1104 17..1120 5520 100 Plus
TRAM-RC 1107 CG11642-PC 1..1104 17..1120 5520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-RE 1656 CG11642-RE 183..1286 17..1120 5520 100 Plus
TRAM-RD 1623 CG11642-RD 150..1253 17..1120 5520 100 Plus
TRAM-RC 1896 CG11642-RC 423..1526 17..1120 5520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 936349..937452 17..1120 5520 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:47:36 has no hits.

BO10441.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:19 Download gff for BO10441.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 1..1107 17..1123 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:29 Download gff for BO10441.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 419..1533 10..1126 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:47 Download gff for BO10441.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 423..1526 17..1122 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:19 Download gff for BO10441.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 419..1533 10..1126 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:20 Download gff for BO10441.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 423..1526 17..1122 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:20 Download gff for BO10441.complete
Subject Subject Range Query Range Percent Splice Strand
X 936349..937452 17..1122 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:47 Download gff for BO10441.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 830382..831485 17..1122 99   Plus

BO10441.pep Sequence

Translation from 16 to 1138

> BO10441.pep
MAIKPGLGRKTSNKNPPILSHEFVIQNHADIISCVAMVFVVGLMNESTAA
FASAFISLHHNVSGEDPSREQPYGKPYTYIAGIKDYCAIFFYTLTCIIMH
AIIQEFVLDKISKKLHLSKFKLARFNESGQLVAFYLLSFVWGAHVLLKEG
YLGQVAQLWEGFPDHPMSFLHKFYFVVQLAYYLHMLPELYFQKIKTKEEQ
QPKIVHSISGFTLIVLAYTLSFQRLALVLLTLHYFSELLSHVFQLIGVFD
REERLAKLRVVNNAVFFLIRFATSVIGVLTLYYGIGGVRSLLALGGLIAL
QGYLVFSFITEQLRAKREAKKEAKREAKLALQTKKPAKTPKDKVKRKKES
DLPEADQTSPSPIKQKLKASFLDH

BO10441.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-PE 368 CG11642-PE 1..368 1..368 1876 100 Plus
TRAM-PD 368 CG11642-PD 1..368 1..368 1876 100 Plus
TRAM-PC 368 CG11642-PC 1..368 1..368 1876 100 Plus
TRAM-PA 368 CG11642-PA 1..368 1..368 1876 100 Plus
TRAM-PB 368 CG11642-PB 1..368 1..368 1876 100 Plus