Clone BO10442 Report

Search the DGRC for BO10442

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCkIIalpha-RA
Protein status:BO10442.pep: validated full length
Sequenced Size:1042

Clone Sequence Records

BO10442.3prime Sequence

823 bp (822 high quality bases) assembled on 2006-04-19

> BO10442.3prime
ATGGTCTAGAAAGCTTGCTTGCTGATTATTGGGATTCATTTGACCATTGA
CAATAGGTAAGAAATATGGATGGGCCATTGCTTCGCGAGCTGTGAGTCGA
TCAACGTGATCATAGCGTAAAAGTTTATCAAGAAAGTCTAGTGCTTCAGG
AGAAACTAGATGTTGGTTGTCAGAATGGACAAATCTTTCCCATCGCTTTC
GTGAGTGACGCTGTAGAATGTCGTGAAATCTTGGATCGAGGTCAATATTG
TATTTATCCAAATATGCGTAGAGTTCTTCGGTGCCCAGCACCTTGGCAAT
GCGTACCAATTGATCATAGTTATCATGTCCGTGGAAAAATGGCTCTTTTC
GGAATATCATCGACGCCAACATACAACCTAGTGACCACATATCCAGTGAG
TAATCATACATCTGGTAATCTACCAGTAATTCGGGACCTTTAAAGTATCT
CGAAGCCACACGAACATTATATTCTTGACCAGGATGGTAAAATTCGGCAA
GTCCCCAATCTATAAGGCGCAATTTTCGATTTTCGTGATCTATCATAACA
TTGTGGGGCTTTACATCACGATGCATTATTCCCATGCTGTGGCAGTAGTC
AAGTGCCTTAAGAAGCTCAAACAAGTAGTAACGAATCTCATAATCAGTTA
ATGTTTGGTAAAGTTGCTTGAAATCTGTGTTGTTGACGTGCTCAAAAATC
AACGCTGGTGTTCGAGAAACTGGGTCCTTGACAACGGCTAANAGTGTTAT
TATATTAGTTCCTCCACGCAAGTTCTCCAAAATTTTGATTTCACGCTTTA
TCTTCTTTTTTTTAACAGGTTTC

BO10442.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17520-PA 1011 CkIIalpha-RA 204..1008 823..19 4006 99.8 Minus
CG17520-PB 1011 CkIIalpha-RB 204..1008 823..19 4006 99.8 Minus
CG17520-PC 1011 CkIIalpha-RC 204..1008 823..19 4006 99.8 Minus
CG17520-PD 1011 CkIIalpha-RD 204..1008 823..19 4006 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-RA 1536 CG17520-RA 531..1335 823..19 4014 99.9 Minus
CkIIalpha-RC 1423 CG17520-RC 418..1222 823..19 4014 99.9 Minus
CkIIalpha-RB 1561 CG17520-RB 556..1360 823..19 4014 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23102455..23103259 823..19 4014 99.9 Minus
Blast to na_te.dros performed 2015-02-12 01:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2061..2124 788..726 121 71.2 Minus

BO10442.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:01 Download gff for BO10442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17520-PC 204..1011 15..823 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:04 Download gff for BO10442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17520-PD 204..1011 15..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:46:18 Download gff for BO10442.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 556..1364 14..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:40:40 Download gff for BO10442.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 556..1364 14..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:40 Download gff for BO10442.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 23102455..23103263 14..823 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:46:18 Download gff for BO10442.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23095555..23096363 14..823 99   Minus

BO10442.5prime Sequence

965 bp (805 high quality bases) assembled on 2006-04-19

> BO10442.5prime
GAAGTTATCAGTCGACATGACACTTCCTAGTGCGGCTCGCGTGTACACAG
ATGTCAATGCGCACAAACCGGATGAATATTGGGACTATGAAAATTATGTG
GTTGATTGGGGCAATCAAGACGATTATCAGTTGGTCCGTAAATTAGGCCG
TGGAAAGTATTCTGAGGTCTTCGAGGCCATTAATATTACGACCACGGAAA
AGTGCGTTGTTAAAATTCTGAAACCTGTTAAAAAAAAGAAGATAAAGCGT
GAAATCAAAATTTTGGAGAACTTGCGTGGAGGAACTAATATAATAACACT
TTTAGCCGTTGTCAAGGACCCAGTTTCTCGAACACCAGCGTTGATTTTTG
AGCACGTCAACAACACAGATTTCAAGCAACTTTACCAAACATTAACTGAT
TATGAGATTCGTTACTACTTGTTTGAGCTTCTTAAGGCACTTGACTACTG
CCACAGCATGGGAATAATGCATCGTGATGTAAAGCCCCACAATGTTATGA
TAGATCACGAAAATCGAAAATTGCGCCTTATAGATTGGGGACTTGCCGAA
TTTTACCATCCTGGTCAAGAATATAATGTTCGTGTGGCTTCGAGATACTT
TAAAGGTCCCGAATTACTGGTAGATTACCAGATGTATGATTACTCACTGG
ATATGTGGTCACTAGGTTGTATGTTGGCGTCGATGATATTCCGAAAAGAG
CCATTTTTCCACGGACATGATAACTATGATCAATTGGTACGCATTGCCAA
GGTGCTGGGCACCGAAGAACTCTACGCATATTTGGATAAATACAATATTG
ACCTCGATCCCAGATTTCACGACATTCTACAGCGTCACTCACGAAAGCGA
TGGGAAAGATTTGTCCATTCTGACAACCAACATCTAGTTTCTCCTGAAGC
ACTAGACTTTCTTGATAAACTTTTACGCTATGATCACGTTGATCGACTCA
CAGCTCGCGAAACAA

BO10442.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17520-PA 1011 CkIIalpha-RA 1..945 17..961 4700 99.8 Plus
CG17520-PB 1011 CkIIalpha-RB 1..945 17..961 4700 99.8 Plus
CG17520-PC 1011 CkIIalpha-RC 1..945 17..961 4700 99.8 Plus
CG17520-PD 1011 CkIIalpha-RD 1..945 17..961 4700 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-RA 1536 CG17520-RA 328..1276 17..965 4715 99.8 Plus
CkIIalpha-RC 1423 CG17520-RC 215..1163 17..965 4715 99.8 Plus
CkIIalpha-RB 1561 CG17520-RB 353..1301 17..965 4715 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23102252..23103200 17..965 4715 99.8 Plus
Blast to na_te.dros performed 2015-02-12 11:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2061..2124 255..317 128 72.7 Plus

BO10442.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:02 Download gff for BO10442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17520-PC 1..947 17..963 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:05 Download gff for BO10442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17520-PD 1..947 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:06 Download gff for BO10442.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 347..1299 10..963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:18 Download gff for BO10442.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 347..1299 10..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:18 Download gff for BO10442.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 23102246..23103198 10..963 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:06 Download gff for BO10442.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23095346..23096298 10..963 99   Plus

BO10442.complete Sequence

1042 bp (1042 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631758

> BO10442.complete
GAAGTTATCAGTCGACATGACACTTCCTAGTGCGGCTCGCGTGTACACAG
ATGTCAATGCGCACAAACCGGATGAATATTGGGACTATGAAAATTATGTG
GTTGATTGGGGCAATCAAGACGATTATCAGTTGGTCCGTAAATTAGGCCG
TGGAAAGTATTCTGAGGTCTTCGAGGCCATTAATATTACGACCACGGAAA
AGTGCGTTGTTAAAATTCTGAAACCTGTTAAAAAAAAGAAGATAAAGCGT
GAAATCAAAATTTTGGAGAACTTGCGTGGAGGAACTAATATAATAACACT
TTTAGCCGTTGTCAAGGACCCAGTTTCTCGAACACCAGCGTTGATTTTTG
AGCACGTCAACAACACAGATTTCAAGCAACTTTACCAAACATTAACTGAT
TATGAGATTCGTTACTACTTGTTTGAGCTTCTTAAGGCACTTGACTACTG
CCACAGCATGGGAATAATGCATCGTGATGTAAAGCCCCACAATGTTATGA
TAGATCACGAAAATCGAAAATTGCGCCTTATAGATTGGGGACTTGCCGAA
TTTTACCATCCTGGTCAAGAATATAATGTTCGTGTGGCTTCGAGATACTT
TAAAGGTCCCGAATTACTGGTAGATTACCAGATGTATGATTACTCACTGG
ATATGTGGTCACTAGGTTGTATGTTGGCGTCGATGATATTCCGAAAAGAG
CCATTTTTCCACGGACATGATAACTATGATCAATTGGTACGCATTGCCAA
GGTGCTGGGCACCGAAGAACTCTACGCATATTTGGATAAATACAATATTG
ACCTCGATCCAAGATTTCACGACATTCTACAGCGTCACTCACGAAAGCGA
TGGGAAAGATTTGTCCATTCTGACAACCAACATCTAGTTTCTCCTGAAGC
ACTAGACTTTCTTGATAAACTTTTACGCTATGATCACGTTGATCGACTCA
CAGCTCGCGAAGCAATGGCCCATCCATATTTCTTACCTATTGTCAATGGT
CAAATGAATCCCAATAATCAGCAAGCAAGCTTTCTAGACCAT

BO10442.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-RA 1011 CG17520-PA 1..1008 17..1024 5040 100 Plus
CkIIalpha-RC 1011 CG17520-PC 1..1008 17..1024 5040 100 Plus
CkIIalpha-RB 1011 CG17520-PB 1..1008 17..1024 5040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-RA 1536 CG17520-RA 328..1335 17..1024 5040 100 Plus
CkIIalpha-RC 1423 CG17520-RC 215..1222 17..1024 5040 100 Plus
CkIIalpha-RB 1561 CG17520-RB 353..1360 17..1024 5040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23102252..23103259 17..1024 5040 100 Plus
Blast to na_te.dros performed 2014-11-26 16:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2061..2124 255..317 128 72.7 Plus

BO10442.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:14 Download gff for BO10442.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RC 1..1011 17..1028 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:42 Download gff for BO10442.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RC 269..1286 10..1029 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:13 Download gff for BO10442.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 353..1360 17..1026 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:15 Download gff for BO10442.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RC 269..1286 10..1029 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:12 Download gff for BO10442.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-RB 353..1360 17..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:12 Download gff for BO10442.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23102252..23103259 17..1026 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:13 Download gff for BO10442.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23095352..23096359 17..1026 99   Plus

BO10442.pep Sequence

Translation from 16 to 1042

> BO10442.pep
MTLPSAARVYTDVNAHKPDEYWDYENYVVDWGNQDDYQLVRKLGRGKYSE
VFEAINITTTEKCVVKILKPVKKKKIKREIKILENLRGGTNIITLLAVVK
DPVSRTPALIFEHVNNTDFKQLYQTLTDYEIRYYLFELLKALDYCHSMGI
MHRDVKPHNVMIDHENRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPEL
LVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTE
ELYAYLDKYNIDLDPRFHDILQRHSRKRWERFVHSDNQHLVSPEALDFLD
KLLRYDHVDRLTAREAMAHPYFLPIVNGQMNPNNQQASFLDH

BO10442.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-PA 336 CG17520-PA 1..336 1..336 1807 100 Plus
CkIIalpha-PC 336 CG17520-PC 1..336 1..336 1807 100 Plus
CkIIalpha-PB 336 CG17520-PB 1..336 1..336 1807 100 Plus
CkIIalpha-PD 336 CG17520-PD 1..336 1..336 1807 100 Plus
CkIIalpha-PE 336 CG17520-PE 1..336 1..336 1807 100 Plus