Clone Sequence Records
BO10442.3prime Sequence
823 bp (822 high quality bases) assembled on 2006-04-19
> BO10442.3prime
ATGGTCTAGAAAGCTTGCTTGCTGATTATTGGGATTCATTTGACCATTGA
CAATAGGTAAGAAATATGGATGGGCCATTGCTTCGCGAGCTGTGAGTCGA
TCAACGTGATCATAGCGTAAAAGTTTATCAAGAAAGTCTAGTGCTTCAGG
AGAAACTAGATGTTGGTTGTCAGAATGGACAAATCTTTCCCATCGCTTTC
GTGAGTGACGCTGTAGAATGTCGTGAAATCTTGGATCGAGGTCAATATTG
TATTTATCCAAATATGCGTAGAGTTCTTCGGTGCCCAGCACCTTGGCAAT
GCGTACCAATTGATCATAGTTATCATGTCCGTGGAAAAATGGCTCTTTTC
GGAATATCATCGACGCCAACATACAACCTAGTGACCACATATCCAGTGAG
TAATCATACATCTGGTAATCTACCAGTAATTCGGGACCTTTAAAGTATCT
CGAAGCCACACGAACATTATATTCTTGACCAGGATGGTAAAATTCGGCAA
GTCCCCAATCTATAAGGCGCAATTTTCGATTTTCGTGATCTATCATAACA
TTGTGGGGCTTTACATCACGATGCATTATTCCCATGCTGTGGCAGTAGTC
AAGTGCCTTAAGAAGCTCAAACAAGTAGTAACGAATCTCATAATCAGTTA
ATGTTTGGTAAAGTTGCTTGAAATCTGTGTTGTTGACGTGCTCAAAAATC
AACGCTGGTGTTCGAGAAACTGGGTCCTTGACAACGGCTAANAGTGTTAT
TATATTAGTTCCTCCACGCAAGTTCTCCAAAATTTTGATTTCACGCTTTA
TCTTCTTTTTTTTAACAGGTTTC
BO10442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17520-PA | 1011 | CkIIalpha-RA | 204..1008 | 823..19 | 4006 | 99.8 | Minus |
CG17520-PB | 1011 | CkIIalpha-RB | 204..1008 | 823..19 | 4006 | 99.8 | Minus |
CG17520-PC | 1011 | CkIIalpha-RC | 204..1008 | 823..19 | 4006 | 99.8 | Minus |
CG17520-PD | 1011 | CkIIalpha-RD | 204..1008 | 823..19 | 4006 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-RA | 1536 | CG17520-RA | 531..1335 | 823..19 | 4014 | 99.9 | Minus |
CkIIalpha-RC | 1423 | CG17520-RC | 418..1222 | 823..19 | 4014 | 99.9 | Minus |
CkIIalpha-RB | 1561 | CG17520-RB | 556..1360 | 823..19 | 4014 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23102455..23103259 | 823..19 | 4014 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 01:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2061..2124 | 788..726 | 121 | 71.2 | Minus |
BO10442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:01 Download gff for
BO10442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17520-PC | 204..1011 | 15..823 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:04 Download gff for
BO10442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17520-PD | 204..1011 | 15..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:46:18 Download gff for
BO10442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 556..1364 | 14..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:40:40 Download gff for
BO10442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 556..1364 | 14..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:40 Download gff for
BO10442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23102455..23103263 | 14..823 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:46:18 Download gff for
BO10442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23095555..23096363 | 14..823 | 99 | | Minus |
BO10442.5prime Sequence
965 bp (805 high quality bases) assembled on 2006-04-19
> BO10442.5prime
GAAGTTATCAGTCGACATGACACTTCCTAGTGCGGCTCGCGTGTACACAG
ATGTCAATGCGCACAAACCGGATGAATATTGGGACTATGAAAATTATGTG
GTTGATTGGGGCAATCAAGACGATTATCAGTTGGTCCGTAAATTAGGCCG
TGGAAAGTATTCTGAGGTCTTCGAGGCCATTAATATTACGACCACGGAAA
AGTGCGTTGTTAAAATTCTGAAACCTGTTAAAAAAAAGAAGATAAAGCGT
GAAATCAAAATTTTGGAGAACTTGCGTGGAGGAACTAATATAATAACACT
TTTAGCCGTTGTCAAGGACCCAGTTTCTCGAACACCAGCGTTGATTTTTG
AGCACGTCAACAACACAGATTTCAAGCAACTTTACCAAACATTAACTGAT
TATGAGATTCGTTACTACTTGTTTGAGCTTCTTAAGGCACTTGACTACTG
CCACAGCATGGGAATAATGCATCGTGATGTAAAGCCCCACAATGTTATGA
TAGATCACGAAAATCGAAAATTGCGCCTTATAGATTGGGGACTTGCCGAA
TTTTACCATCCTGGTCAAGAATATAATGTTCGTGTGGCTTCGAGATACTT
TAAAGGTCCCGAATTACTGGTAGATTACCAGATGTATGATTACTCACTGG
ATATGTGGTCACTAGGTTGTATGTTGGCGTCGATGATATTCCGAAAAGAG
CCATTTTTCCACGGACATGATAACTATGATCAATTGGTACGCATTGCCAA
GGTGCTGGGCACCGAAGAACTCTACGCATATTTGGATAAATACAATATTG
ACCTCGATCCCAGATTTCACGACATTCTACAGCGTCACTCACGAAAGCGA
TGGGAAAGATTTGTCCATTCTGACAACCAACATCTAGTTTCTCCTGAAGC
ACTAGACTTTCTTGATAAACTTTTACGCTATGATCACGTTGATCGACTCA
CAGCTCGCGAAACAA
BO10442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17520-PA | 1011 | CkIIalpha-RA | 1..945 | 17..961 | 4700 | 99.8 | Plus |
CG17520-PB | 1011 | CkIIalpha-RB | 1..945 | 17..961 | 4700 | 99.8 | Plus |
CG17520-PC | 1011 | CkIIalpha-RC | 1..945 | 17..961 | 4700 | 99.8 | Plus |
CG17520-PD | 1011 | CkIIalpha-RD | 1..945 | 17..961 | 4700 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-RA | 1536 | CG17520-RA | 328..1276 | 17..965 | 4715 | 99.8 | Plus |
CkIIalpha-RC | 1423 | CG17520-RC | 215..1163 | 17..965 | 4715 | 99.8 | Plus |
CkIIalpha-RB | 1561 | CG17520-RB | 353..1301 | 17..965 | 4715 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23102252..23103200 | 17..965 | 4715 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-12 11:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2061..2124 | 255..317 | 128 | 72.7 | Plus |
BO10442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:02 Download gff for
BO10442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17520-PC | 1..947 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:05 Download gff for
BO10442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17520-PD | 1..947 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:06 Download gff for
BO10442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 347..1299 | 10..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:18 Download gff for
BO10442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 347..1299 | 10..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:18 Download gff for
BO10442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23102246..23103198 | 10..963 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:06 Download gff for
BO10442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23095346..23096298 | 10..963 | 99 | | Plus |
BO10442.complete Sequence
1042 bp (1042 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631758
> BO10442.complete
GAAGTTATCAGTCGACATGACACTTCCTAGTGCGGCTCGCGTGTACACAG
ATGTCAATGCGCACAAACCGGATGAATATTGGGACTATGAAAATTATGTG
GTTGATTGGGGCAATCAAGACGATTATCAGTTGGTCCGTAAATTAGGCCG
TGGAAAGTATTCTGAGGTCTTCGAGGCCATTAATATTACGACCACGGAAA
AGTGCGTTGTTAAAATTCTGAAACCTGTTAAAAAAAAGAAGATAAAGCGT
GAAATCAAAATTTTGGAGAACTTGCGTGGAGGAACTAATATAATAACACT
TTTAGCCGTTGTCAAGGACCCAGTTTCTCGAACACCAGCGTTGATTTTTG
AGCACGTCAACAACACAGATTTCAAGCAACTTTACCAAACATTAACTGAT
TATGAGATTCGTTACTACTTGTTTGAGCTTCTTAAGGCACTTGACTACTG
CCACAGCATGGGAATAATGCATCGTGATGTAAAGCCCCACAATGTTATGA
TAGATCACGAAAATCGAAAATTGCGCCTTATAGATTGGGGACTTGCCGAA
TTTTACCATCCTGGTCAAGAATATAATGTTCGTGTGGCTTCGAGATACTT
TAAAGGTCCCGAATTACTGGTAGATTACCAGATGTATGATTACTCACTGG
ATATGTGGTCACTAGGTTGTATGTTGGCGTCGATGATATTCCGAAAAGAG
CCATTTTTCCACGGACATGATAACTATGATCAATTGGTACGCATTGCCAA
GGTGCTGGGCACCGAAGAACTCTACGCATATTTGGATAAATACAATATTG
ACCTCGATCCAAGATTTCACGACATTCTACAGCGTCACTCACGAAAGCGA
TGGGAAAGATTTGTCCATTCTGACAACCAACATCTAGTTTCTCCTGAAGC
ACTAGACTTTCTTGATAAACTTTTACGCTATGATCACGTTGATCGACTCA
CAGCTCGCGAAGCAATGGCCCATCCATATTTCTTACCTATTGTCAATGGT
CAAATGAATCCCAATAATCAGCAAGCAAGCTTTCTAGACCAT
BO10442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-RA | 1011 | CG17520-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
CkIIalpha-RC | 1011 | CG17520-PC | 1..1008 | 17..1024 | 5040 | 100 | Plus |
CkIIalpha-RB | 1011 | CG17520-PB | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-RA | 1536 | CG17520-RA | 328..1335 | 17..1024 | 5040 | 100 | Plus |
CkIIalpha-RC | 1423 | CG17520-RC | 215..1222 | 17..1024 | 5040 | 100 | Plus |
CkIIalpha-RB | 1561 | CG17520-RB | 353..1360 | 17..1024 | 5040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23102252..23103259 | 17..1024 | 5040 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2061..2124 | 255..317 | 128 | 72.7 | Plus |
BO10442.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:14 Download gff for
BO10442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RC | 1..1011 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:42 Download gff for
BO10442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RC | 269..1286 | 10..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:13 Download gff for
BO10442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 353..1360 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:15 Download gff for
BO10442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RC | 269..1286 | 10..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:12 Download gff for
BO10442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-RB | 353..1360 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:12 Download gff for
BO10442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23102252..23103259 | 17..1026 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:13 Download gff for
BO10442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23095352..23096359 | 17..1026 | 99 | | Plus |
BO10442.pep Sequence
Translation from 16 to 1042
> BO10442.pep
MTLPSAARVYTDVNAHKPDEYWDYENYVVDWGNQDDYQLVRKLGRGKYSE
VFEAINITTTEKCVVKILKPVKKKKIKREIKILENLRGGTNIITLLAVVK
DPVSRTPALIFEHVNNTDFKQLYQTLTDYEIRYYLFELLKALDYCHSMGI
MHRDVKPHNVMIDHENRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPEL
LVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTE
ELYAYLDKYNIDLDPRFHDILQRHSRKRWERFVHSDNQHLVSPEALDFLD
KLLRYDHVDRLTAREAMAHPYFLPIVNGQMNPNNQQASFLDH
BO10442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-PA | 336 | CG17520-PA | 1..336 | 1..336 | 1807 | 100 | Plus |
CkIIalpha-PC | 336 | CG17520-PC | 1..336 | 1..336 | 1807 | 100 | Plus |
CkIIalpha-PB | 336 | CG17520-PB | 1..336 | 1..336 | 1807 | 100 | Plus |
CkIIalpha-PD | 336 | CG17520-PD | 1..336 | 1..336 | 1807 | 100 | Plus |
CkIIalpha-PE | 336 | CG17520-PE | 1..336 | 1..336 | 1807 | 100 | Plus |