Clone BO10443 Report

Search the DGRC for BO10443

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG17746-RA
Protein status:BO10443.pep: validated full length
Sequenced Size:1147

Clone Sequence Records

BO10443.3prime Sequence

1011 bp (831 high quality bases) assembled on 2006-04-19

> BO10443.3prime
ATGGTCTAGAAAGCTTGCATCGTATATATAGTGGCTTTCGATCGCTGCCA
TCTTGTTTAGATGCGACGCCATCTTCACCTCGTCGTCCATGGGACCGGAA
TTGGATTGCTTCTGGCAGGGTTTGGTTTGCGTTTCCGTTTCGGTATCGGT
TTCCGCCTCCGCTTCGTCCTTTGCGACTTCATCCTTCGTCGCGTCGCCGG
CTTCCTCTTGATCATTGTTAGTCGCCTGGCTGCCATTTCGGCAGCGGGCT
ATCAGATCGCTGTAGGGACGGCCGTGCAGCAGGCACACCAGCACCACGGT
CATATTGTCGCCGCCGAGGCCTCCCATTTGGCAGTCGGGTGCTAGGCAGT
GATTCATCAGCTCTTCGCAGATCTCCTCCGGAAACATGCCCATGCCGATG
CGCGTGCGACAGAACTCGAGCACTTCCGCGTTGCTCATTACATCCCAAAT
GCCATCGCAGGCCAGCACGATGAATTCCCAATCGTCCATGATTTTCCGCG
TCTCCACGTCCGGGAAGGCTGTGACGATTTGATCTTCCGGTTTTTTGTTC
TCATGCTTGAATACATAGTCACCGAGGGCGCGGGAAAGCGCAAGATTGCC
GTTGACGCGATTGAACTCAACCCAGCCGCCGCCTTGGATGATCCGCTTGG
ACTCCGCCTCGTTATTGGGCTTGTGGTCCAGCGACAGGACCTCCAGTTGT
CCGTTCACGCAGGCAATGGCGCGCGAGTCGCCTGCGTTGGCGCAATAAAG
CTTGTTGTCCTTTACCAAAACAACTACGGCAGTCGAGCCGGCCATCTGGT
CACCACATGTCTTGTTGCGTAGCATAACGTAGTCGATGTCCAGAAAGCCC
TGCTGCAGCGCCTGTTCGATGTTGTCGTTGTACTCCGGCCGCTTGAGAAC
GTACTTGTGCAGGTGCTTGCCGGCGTACTGGGCCACCGTGGCGCCTCCGT
GCCCGTCGTAGACGGCGAAAATGCCGCTCCCGGATCGTCGGGCAACGAAA
AGAAGTGGGTG

BO10443.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-PA 1116 CG17746-RA 163..1113 969..19 4755 100 Minus
CG17746-PB 1116 CG17746-RB 163..1113 969..19 4755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-RB 1694 CG17746-RB 341..1334 1011..19 4870 99.4 Minus
CG17746-RA 1577 CG17746-RA 366..1359 1011..19 4870 99.4 Minus
Ppm1-RA 1422 CG12169-RA 621..1038 688..274 380 74.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3237165..3237666 19..520 2510 100 Plus
3L 28110227 3L 3237742..3238076 519..853 1675 100 Plus
3L 28110227 3L 3238611..3238774 849..1011 695 96.3 Plus
3L 28110227 3L 582009..582426 688..274 325 73 Minus
3L 28110227 3L 581725..581813 969..881 190 80.9 Minus
Blast to na_te.dros performed on 2015-02-01 10:25:02 has no hits.

BO10443.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:03 Download gff for BO10443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-PA 120..1116 15..1011 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:06 Download gff for BO10443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-PB 120..1116 15..1011 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:27:19 Download gff for BO10443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 366..1364 11..1011 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:04:03 Download gff for BO10443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 366..1364 11..1011 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:04:03 Download gff for BO10443.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3238612..3238774 850..1011 96   Plus
3L 3237160..3237664 11..518 99 <- Plus
3L 3237742..3238072 519..849 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:27:19 Download gff for BO10443.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3237160..3237664 11..518 99 <- Plus
arm_3L 3237742..3238072 519..849 100 <- Plus
arm_3L 3238612..3238774 850..1011 96   Plus

BO10443.5prime Sequence

913 bp (767 high quality bases) assembled on 2006-04-19

> BO10443.5prime
GAAGTTATCAGTCGACATGGGTCAGACTCTATCGGAACCGGTGACCGCCA
AGGAGTCAGCGTACTGCCAGAACGCCGCCTACCGCGTGGGCAGCTCCTGC
ATGCAGGGGTGGCGCATCAACATGGAGGACTCGCACACCCACATCCTCTC
GCTGCCGGACGATCCGGGAGCGGCATTCTTCGCCGTCTACGACGGGCACG
GAGGCGCCACGGTGGCCCAGTACGCCGGCAAGCACCTGCACAAGTACGTT
CTCAAGCGGCCGGAGTACAACGACAACATCGAACAGGCGCTGCAGCAGGG
CTTTCTGGACATCGACTACGTTATGCTACGCAACAAGACATGTGGTGACC
AGATGGCCGGCTCGACTGCCGTAGTTGTTTTGGTAAAGGACAACAAGCTT
TATTGCGCCAACGCAGGCGACTCGCGCGCCATTGCCTGCGTGAACGGACA
ACTGGAGGTCCTGTCGCTGGACCACAAGCCCAATAACGAGGCGGAGTCCA
AGCGGATCATCCAAGGCGGCGGCTGGGTTGAGTTCAATCGCGTCAACGGC
AATCTTGCGCTTTCCCGCGCCCTCGGTGACTATGTATTCAAGCATGAGAA
CAAAAAACCGGAAGATCAAATCGTCACAGCCTTCCCGGACGTGGAGACGC
GGAAAATCATGGACGATTGGGAATTCATCGTGCTGGCCTGCGATGGCATT
TGGGATGTAATGAGCAACGCGGAAGTGCTCGAGTTCTGTCGCACGCGCAT
CGGCATGGGCATGTTTCCGGAGGAGATCTGCGAAGAGCTGATGAATCACT
GCCTAGCACCCGACTGCCAAATGGGAGGCCTCGGCGGCGACAATATGACC
GTGGTGCTGGTGTGCCTGCTGCACGGCCGTCCCTACAGCGAATCTGATAG
CCCGCTGCCGAAA

BO10443.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-PA 1116 CG17746-RA 1..875 17..891 4375 100 Plus
CG17746-PB 1116 CG17746-RB 1..875 17..891 4375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-RB 1694 CG17746-RB 222..1117 17..913 4460 99.9 Plus
CG17746-RA 1577 CG17746-RA 247..1142 17..913 4460 99.9 Plus
Ppm1-RA 1422 CG12169-RA 175..1038 17..874 550 72.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3237742..3238076 629..295 1675 100 Minus
3L 28110227 3L 3238611..3238893 299..17 1415 100 Minus
3L 28110227 3L 3237382..3237666 913..628 1380 99.7 Minus
3L 28110227 3L 581563..582426 17..874 465 71.1 Plus
Blast to na_te.dros performed on 2015-02-02 12:49:53 has no hits.

BO10443.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:04 Download gff for BO10443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-PA 1..893 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:07 Download gff for BO10443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-PB 1..893 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:31 Download gff for BO10443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 236..1139 6..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:59 Download gff for BO10443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 236..1139 6..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:59 Download gff for BO10443.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3237385..3237664 630..910 99 <- Minus
3L 3237742..3238072 299..629 100 <- Minus
3L 3238612..3238904 6..298 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:31 Download gff for BO10443.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3238612..3238904 6..298 98   Minus
arm_3L 3237385..3237664 630..910 99 <- Minus
arm_3L 3237742..3238072 299..629 100 <- Minus

BO10443.complete Sequence

1147 bp (1147 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631759

> BO10443.complete
GAAGTTATCAGTCGACATGGGTCAGACTCTATCGGAACCGGTGACCGCCA
AGGAGTCAGCGTACTGCCAGAACGCCGCCTACCGCGTGGGCAGCTCCTGC
ATGCAGGGGTGGCGCATCAACATGGAGGACTCGCACACCCACATCCTCTC
GCTGCCGGACGATCCGGGAGCGGCATTCTTCGCCGTCTACGACGGGCACG
GAGGCGCCACGGTGGCCCAGTACGCCGGCAAGCACCTGCACAAGTACGTT
CTCAAGCGGCCGGAGTACAACGACAACATCGAACAGGCGCTGCAGCAGGG
CTTTCTGGACATCGACTACGTTATGCTACGCAACAAGACATGTGGTGACC
AGATGGCCGGCTCGACTGCCGTAGTTGTTTTGGTAAAGGACAACAAGCTT
TATTGCGCCAACGCAGGCGACTCGCGCGCCATTGCCTGCGTGAACGGACA
ACTGGAGGTCCTGTCGCTGGACCACAAGCCCAATAACGAGGCGGAGTCCA
AGCGGATCATCCAAGGCGGCGGCTGGGTTGAGTTCAATCGCGTCAACGGC
AATCTTGCGCTTTCCCGCGCCCTCGGTGACTATGTATTCAAGCATGAGAA
CAAAAAACCGGAAGATCAAATCGTCACAGCCTTCCCGGACGTGGAGACGC
GGAAAATCATGGACGATTGGGAATTCATCGTGCTGGCCTGCGATGGCATT
TGGGATGTAATGAGCAACGCGGAAGTGCTCGAGTTCTGTCGCACGCGCAT
CGGCATGGGCATGTTTCCGGAGGAGATCTGCGAAGAGCTGATGAATCACT
GCCTAGCACCCGACTGCCAAATGGGAGGCCTCGGCGGCGACAATATGACC
GTGGTGCTGGTGTGCCTGCTGCACGGCCGTCCCTACAGCGATCTGATAGC
CCGCTGCCGAAATGGCAGCCAGGCGACTAACAATGATCAAGAGGAAGCCG
GCGACGCGACGAAGGATGAAGTCGCAAAGGACGAAGCGGAGGCGGAAACC
GATACCGAAACGGAAACGCAAACCAAACCCTGCCAGAAGCAATCCAATTC
CGGTCCCATGGACGACGAGGTGAAGATGGCGTCGCATCTAAACAAGATGG
CAGCGATCGAAAGCCACTATATATACGATGCAAGCTTTCTAGACCAT

BO10443.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-RB 1116 CG17746-PB 1..1113 17..1129 5565 100 Plus
CG17746-RA 1116 CG17746-PA 1..1113 17..1129 5565 100 Plus
Ppm1-RA 1059 CG12169-PA 1..864 17..874 465 71.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-RB 1694 CG17746-RB 222..1334 17..1129 5565 100 Plus
CG17746-RA 1577 CG17746-RA 247..1359 17..1129 5565 100 Plus
Ppm1-RA 1422 CG12169-RA 175..1038 17..874 465 71.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3237165..3237666 1129..628 2510 100 Minus
3L 28110227 3L 3237742..3238076 629..295 1675 100 Minus
3L 28110227 3L 3238611..3238893 299..17 1415 100 Minus
3L 28110227 3L 581563..582426 17..874 465 71.1 Plus
Blast to na_te.dros performed on 2014-11-27 19:50:50 has no hits.

BO10443.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:33 Download gff for BO10443.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RB 1..1116 17..1133 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:53 Download gff for BO10443.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RB 160..1288 6..1137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:39 Download gff for BO10443.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 247..1359 17..1131 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:34 Download gff for BO10443.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RB 160..1288 6..1137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:26 Download gff for BO10443.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 247..1359 17..1131 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:26 Download gff for BO10443.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3237163..3237664 630..1131 99 <- Minus
3L 3237742..3238072 299..629 100 <- Minus
3L 3238612..3238893 17..298 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:39 Download gff for BO10443.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3237163..3237664 630..1131 99 <- Minus
arm_3L 3237742..3238072 299..629 100 <- Minus
arm_3L 3238612..3238893 17..298 100   Minus

BO10443.pep Sequence

Translation from 16 to 1147

> BO10443.pep
MGQTLSEPVTAKESAYCQNAAYRVGSSCMQGWRINMEDSHTHILSLPDDP
GAAFFAVYDGHGGATVAQYAGKHLHKYVLKRPEYNDNIEQALQQGFLDID
YVMLRNKTCGDQMAGSTAVVVLVKDNKLYCANAGDSRAIACVNGQLEVLS
LDHKPNNEAESKRIIQGGGWVEFNRVNGNLALSRALGDYVFKHENKKPED
QIVTAFPDVETRKIMDDWEFIVLACDGIWDVMSNAEVLEFCRTRIGMGMF
PEEICEELMNHCLAPDCQMGGLGGDNMTVVLVCLLHGRPYSDLIARCRNG
SQATNNDQEEAGDATKDEVAKDEAEAETDTETETQTKPCQKQSNSGPMDD
EVKMASHLNKMAAIESHYIYDASFLDH

BO10443.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-PB 371 CG17746-PB 1..371 1..371 1982 100 Plus
CG17746-PA 371 CG17746-PA 1..371 1..371 1982 100 Plus
Ppm1-PA 352 CG12169-PA 1..299 1..297 1110 68.9 Plus
CG6036-PA 371 CG6036-PA 5..293 1..295 505 39.6 Plus
alph-PF 332 CG1906-PF 1..282 1..282 457 38.2 Plus