Clone Sequence Records
BO10443.3prime Sequence
1011 bp (831 high quality bases) assembled on 2006-04-19
> BO10443.3prime
ATGGTCTAGAAAGCTTGCATCGTATATATAGTGGCTTTCGATCGCTGCCA
TCTTGTTTAGATGCGACGCCATCTTCACCTCGTCGTCCATGGGACCGGAA
TTGGATTGCTTCTGGCAGGGTTTGGTTTGCGTTTCCGTTTCGGTATCGGT
TTCCGCCTCCGCTTCGTCCTTTGCGACTTCATCCTTCGTCGCGTCGCCGG
CTTCCTCTTGATCATTGTTAGTCGCCTGGCTGCCATTTCGGCAGCGGGCT
ATCAGATCGCTGTAGGGACGGCCGTGCAGCAGGCACACCAGCACCACGGT
CATATTGTCGCCGCCGAGGCCTCCCATTTGGCAGTCGGGTGCTAGGCAGT
GATTCATCAGCTCTTCGCAGATCTCCTCCGGAAACATGCCCATGCCGATG
CGCGTGCGACAGAACTCGAGCACTTCCGCGTTGCTCATTACATCCCAAAT
GCCATCGCAGGCCAGCACGATGAATTCCCAATCGTCCATGATTTTCCGCG
TCTCCACGTCCGGGAAGGCTGTGACGATTTGATCTTCCGGTTTTTTGTTC
TCATGCTTGAATACATAGTCACCGAGGGCGCGGGAAAGCGCAAGATTGCC
GTTGACGCGATTGAACTCAACCCAGCCGCCGCCTTGGATGATCCGCTTGG
ACTCCGCCTCGTTATTGGGCTTGTGGTCCAGCGACAGGACCTCCAGTTGT
CCGTTCACGCAGGCAATGGCGCGCGAGTCGCCTGCGTTGGCGCAATAAAG
CTTGTTGTCCTTTACCAAAACAACTACGGCAGTCGAGCCGGCCATCTGGT
CACCACATGTCTTGTTGCGTAGCATAACGTAGTCGATGTCCAGAAAGCCC
TGCTGCAGCGCCTGTTCGATGTTGTCGTTGTACTCCGGCCGCTTGAGAAC
GTACTTGTGCAGGTGCTTGCCGGCGTACTGGGCCACCGTGGCGCCTCCGT
GCCCGTCGTAGACGGCGAAAATGCCGCTCCCGGATCGTCGGGCAACGAAA
AGAAGTGGGTG
BO10443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-PA | 1116 | CG17746-RA | 163..1113 | 969..19 | 4755 | 100 | Minus |
CG17746-PB | 1116 | CG17746-RB | 163..1113 | 969..19 | 4755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-RB | 1694 | CG17746-RB | 341..1334 | 1011..19 | 4870 | 99.4 | Minus |
CG17746-RA | 1577 | CG17746-RA | 366..1359 | 1011..19 | 4870 | 99.4 | Minus |
Ppm1-RA | 1422 | CG12169-RA | 621..1038 | 688..274 | 380 | 74.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3237165..3237666 | 19..520 | 2510 | 100 | Plus |
3L | 28110227 | 3L | 3237742..3238076 | 519..853 | 1675 | 100 | Plus |
3L | 28110227 | 3L | 3238611..3238774 | 849..1011 | 695 | 96.3 | Plus |
3L | 28110227 | 3L | 582009..582426 | 688..274 | 325 | 73 | Minus |
3L | 28110227 | 3L | 581725..581813 | 969..881 | 190 | 80.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:25:02 has no hits.
BO10443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:03 Download gff for
BO10443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-PA | 120..1116 | 15..1011 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:06 Download gff for
BO10443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-PB | 120..1116 | 15..1011 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:27:19 Download gff for
BO10443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 366..1364 | 11..1011 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:04:03 Download gff for
BO10443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 366..1364 | 11..1011 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:04:03 Download gff for
BO10443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3238612..3238774 | 850..1011 | 96 | | Plus |
3L | 3237160..3237664 | 11..518 | 99 | <- | Plus |
3L | 3237742..3238072 | 519..849 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:27:19 Download gff for
BO10443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3237160..3237664 | 11..518 | 99 | <- | Plus |
arm_3L | 3237742..3238072 | 519..849 | 100 | <- | Plus |
arm_3L | 3238612..3238774 | 850..1011 | 96 | | Plus |
BO10443.5prime Sequence
913 bp (767 high quality bases) assembled on 2006-04-19
> BO10443.5prime
GAAGTTATCAGTCGACATGGGTCAGACTCTATCGGAACCGGTGACCGCCA
AGGAGTCAGCGTACTGCCAGAACGCCGCCTACCGCGTGGGCAGCTCCTGC
ATGCAGGGGTGGCGCATCAACATGGAGGACTCGCACACCCACATCCTCTC
GCTGCCGGACGATCCGGGAGCGGCATTCTTCGCCGTCTACGACGGGCACG
GAGGCGCCACGGTGGCCCAGTACGCCGGCAAGCACCTGCACAAGTACGTT
CTCAAGCGGCCGGAGTACAACGACAACATCGAACAGGCGCTGCAGCAGGG
CTTTCTGGACATCGACTACGTTATGCTACGCAACAAGACATGTGGTGACC
AGATGGCCGGCTCGACTGCCGTAGTTGTTTTGGTAAAGGACAACAAGCTT
TATTGCGCCAACGCAGGCGACTCGCGCGCCATTGCCTGCGTGAACGGACA
ACTGGAGGTCCTGTCGCTGGACCACAAGCCCAATAACGAGGCGGAGTCCA
AGCGGATCATCCAAGGCGGCGGCTGGGTTGAGTTCAATCGCGTCAACGGC
AATCTTGCGCTTTCCCGCGCCCTCGGTGACTATGTATTCAAGCATGAGAA
CAAAAAACCGGAAGATCAAATCGTCACAGCCTTCCCGGACGTGGAGACGC
GGAAAATCATGGACGATTGGGAATTCATCGTGCTGGCCTGCGATGGCATT
TGGGATGTAATGAGCAACGCGGAAGTGCTCGAGTTCTGTCGCACGCGCAT
CGGCATGGGCATGTTTCCGGAGGAGATCTGCGAAGAGCTGATGAATCACT
GCCTAGCACCCGACTGCCAAATGGGAGGCCTCGGCGGCGACAATATGACC
GTGGTGCTGGTGTGCCTGCTGCACGGCCGTCCCTACAGCGAATCTGATAG
CCCGCTGCCGAAA
BO10443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-PA | 1116 | CG17746-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
CG17746-PB | 1116 | CG17746-RB | 1..875 | 17..891 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-RB | 1694 | CG17746-RB | 222..1117 | 17..913 | 4460 | 99.9 | Plus |
CG17746-RA | 1577 | CG17746-RA | 247..1142 | 17..913 | 4460 | 99.9 | Plus |
Ppm1-RA | 1422 | CG12169-RA | 175..1038 | 17..874 | 550 | 72.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3237742..3238076 | 629..295 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 3238611..3238893 | 299..17 | 1415 | 100 | Minus |
3L | 28110227 | 3L | 3237382..3237666 | 913..628 | 1380 | 99.7 | Minus |
3L | 28110227 | 3L | 581563..582426 | 17..874 | 465 | 71.1 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:49:53 has no hits.
BO10443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:04 Download gff for
BO10443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-PA | 1..893 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:07 Download gff for
BO10443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-PB | 1..893 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:31 Download gff for
BO10443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 236..1139 | 6..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:59 Download gff for
BO10443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 236..1139 | 6..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:59 Download gff for
BO10443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3237385..3237664 | 630..910 | 99 | <- | Minus |
3L | 3237742..3238072 | 299..629 | 100 | <- | Minus |
3L | 3238612..3238904 | 6..298 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:31 Download gff for
BO10443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3238612..3238904 | 6..298 | 98 | | Minus |
arm_3L | 3237385..3237664 | 630..910 | 99 | <- | Minus |
arm_3L | 3237742..3238072 | 299..629 | 100 | <- | Minus |
BO10443.complete Sequence
1147 bp (1147 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631759
> BO10443.complete
GAAGTTATCAGTCGACATGGGTCAGACTCTATCGGAACCGGTGACCGCCA
AGGAGTCAGCGTACTGCCAGAACGCCGCCTACCGCGTGGGCAGCTCCTGC
ATGCAGGGGTGGCGCATCAACATGGAGGACTCGCACACCCACATCCTCTC
GCTGCCGGACGATCCGGGAGCGGCATTCTTCGCCGTCTACGACGGGCACG
GAGGCGCCACGGTGGCCCAGTACGCCGGCAAGCACCTGCACAAGTACGTT
CTCAAGCGGCCGGAGTACAACGACAACATCGAACAGGCGCTGCAGCAGGG
CTTTCTGGACATCGACTACGTTATGCTACGCAACAAGACATGTGGTGACC
AGATGGCCGGCTCGACTGCCGTAGTTGTTTTGGTAAAGGACAACAAGCTT
TATTGCGCCAACGCAGGCGACTCGCGCGCCATTGCCTGCGTGAACGGACA
ACTGGAGGTCCTGTCGCTGGACCACAAGCCCAATAACGAGGCGGAGTCCA
AGCGGATCATCCAAGGCGGCGGCTGGGTTGAGTTCAATCGCGTCAACGGC
AATCTTGCGCTTTCCCGCGCCCTCGGTGACTATGTATTCAAGCATGAGAA
CAAAAAACCGGAAGATCAAATCGTCACAGCCTTCCCGGACGTGGAGACGC
GGAAAATCATGGACGATTGGGAATTCATCGTGCTGGCCTGCGATGGCATT
TGGGATGTAATGAGCAACGCGGAAGTGCTCGAGTTCTGTCGCACGCGCAT
CGGCATGGGCATGTTTCCGGAGGAGATCTGCGAAGAGCTGATGAATCACT
GCCTAGCACCCGACTGCCAAATGGGAGGCCTCGGCGGCGACAATATGACC
GTGGTGCTGGTGTGCCTGCTGCACGGCCGTCCCTACAGCGATCTGATAGC
CCGCTGCCGAAATGGCAGCCAGGCGACTAACAATGATCAAGAGGAAGCCG
GCGACGCGACGAAGGATGAAGTCGCAAAGGACGAAGCGGAGGCGGAAACC
GATACCGAAACGGAAACGCAAACCAAACCCTGCCAGAAGCAATCCAATTC
CGGTCCCATGGACGACGAGGTGAAGATGGCGTCGCATCTAAACAAGATGG
CAGCGATCGAAAGCCACTATATATACGATGCAAGCTTTCTAGACCAT
BO10443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-RB | 1116 | CG17746-PB | 1..1113 | 17..1129 | 5565 | 100 | Plus |
CG17746-RA | 1116 | CG17746-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Ppm1-RA | 1059 | CG12169-PA | 1..864 | 17..874 | 465 | 71.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-RB | 1694 | CG17746-RB | 222..1334 | 17..1129 | 5565 | 100 | Plus |
CG17746-RA | 1577 | CG17746-RA | 247..1359 | 17..1129 | 5565 | 100 | Plus |
Ppm1-RA | 1422 | CG12169-RA | 175..1038 | 17..874 | 465 | 71.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3237165..3237666 | 1129..628 | 2510 | 100 | Minus |
3L | 28110227 | 3L | 3237742..3238076 | 629..295 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 3238611..3238893 | 299..17 | 1415 | 100 | Minus |
3L | 28110227 | 3L | 581563..582426 | 17..874 | 465 | 71.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:50:50 has no hits.
BO10443.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:33 Download gff for
BO10443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RB | 1..1116 | 17..1133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:53 Download gff for
BO10443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RB | 160..1288 | 6..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:39 Download gff for
BO10443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 247..1359 | 17..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:34 Download gff for
BO10443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RB | 160..1288 | 6..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:26 Download gff for
BO10443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 247..1359 | 17..1131 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:26 Download gff for
BO10443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3237163..3237664 | 630..1131 | 99 | <- | Minus |
3L | 3237742..3238072 | 299..629 | 100 | <- | Minus |
3L | 3238612..3238893 | 17..298 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:39 Download gff for
BO10443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3237163..3237664 | 630..1131 | 99 | <- | Minus |
arm_3L | 3237742..3238072 | 299..629 | 100 | <- | Minus |
arm_3L | 3238612..3238893 | 17..298 | 100 | | Minus |
BO10443.pep Sequence
Translation from 16 to 1147
> BO10443.pep
MGQTLSEPVTAKESAYCQNAAYRVGSSCMQGWRINMEDSHTHILSLPDDP
GAAFFAVYDGHGGATVAQYAGKHLHKYVLKRPEYNDNIEQALQQGFLDID
YVMLRNKTCGDQMAGSTAVVVLVKDNKLYCANAGDSRAIACVNGQLEVLS
LDHKPNNEAESKRIIQGGGWVEFNRVNGNLALSRALGDYVFKHENKKPED
QIVTAFPDVETRKIMDDWEFIVLACDGIWDVMSNAEVLEFCRTRIGMGMF
PEEICEELMNHCLAPDCQMGGLGGDNMTVVLVCLLHGRPYSDLIARCRNG
SQATNNDQEEAGDATKDEVAKDEAEAETDTETETQTKPCQKQSNSGPMDD
EVKMASHLNKMAAIESHYIYDASFLDH
BO10443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-PB | 371 | CG17746-PB | 1..371 | 1..371 | 1982 | 100 | Plus |
CG17746-PA | 371 | CG17746-PA | 1..371 | 1..371 | 1982 | 100 | Plus |
Ppm1-PA | 352 | CG12169-PA | 1..299 | 1..297 | 1110 | 68.9 | Plus |
CG6036-PA | 371 | CG6036-PA | 5..293 | 1..295 | 505 | 39.6 | Plus |
alph-PF | 332 | CG1906-PF | 1..282 | 1..282 | 457 | 38.2 | Plus |