Clone Sequence Records
BO10444.complete Sequence
1930 bp assembled on 2010-02-17
GenBank Submission: KX798622
> BO10444.complete
GAAGTTATCAGTCGACATGAGTGCATCGACGAGCACGTCGACGGCGGCGT
CCCAGGACGCCTGCTACATATCGCTCCTTGGCCTGGCGGAGTACTTCCGC
ACCTCGCAGCCGCCGAACATCAAGAAATGCATCCAGTGTCTTCAAGCCCT
GTTCACATTTATGCCGCCCTCGAAGGTCGAGGCGCGGACACATTTGCAGA
TGGGCCAGATCCTGATGGCCTACACTAAGAACATCGATCTGGCGCGCCAG
CATTTGGAGAAGGCGTGGAGCATATCCGAACCGCTGCCCAATTTCGACGT
TAAGTTCGACACCGCCTCGCTGCTGGCCCAACTGCATCTGCAGACGGACA
GAAACTCGCATCAGGCCAAGGCGATGCTCCGGCGGGCCGTGGAACTGTCG
CAAAACAACGTCTATTGGCACTGCAAGCTGCTGCTCCAGCTGGCCCAAAT
ACATGCCAGCGATCGCGAGTACTCGCTGGCCTCCGAACTGCTGGCCGTGG
GCGCGGAAAGTGCCGACGAGGCGAGCGCCACGTACCTGAAAGTGCTCTTC
CTGCTCTCGCGCGCCATGATCCTTATGATCGAGCGCAAGACCAACGACGT
GCTCGCCCTGCTCAACTCCGCCGGCCAAATCATTGACAACAACATACCCA
ATCCACACCAGAAGGAGTACCTGAAGGTGTTTTTCCTGGTGCTACAGGTG
TGCTACTACCTGGCCCTCGGGCAGGTAAAAACGGTGAAGCCTAGTCTCAA
ACAGCTGCAGATGTCCATACAAACGATAATGGCGCCAAATTGGCCTTCGG
ATGAGGCGATTTTCGGGGCAAATCAACTCGAGATGTTTGTGTGGCTGCCC
AAGGAGCAGCTGTACGTCCTGGTCTATCTGGTCACTGTCTCCCACTCAAT
GATGGCGGGCTACATGGACAAAGCACAAAAGTACACGGAAAAAGCACTCA
CCCAGATCGAAAAACTTAAGCAACAGGAGGACAAACCCATTCTATCCGTA
TTCAAGGTGATTCTGCTGGAGCACATTGTGATGTGCCGCATGGTGATGGG
CAACCGGGAACTGGCTATCCGGGAAATAGCAGCCGCGAGAGACGTTTGCA
TGGCCGCTCCGCAACGCAGCCTGCTACGGCGACACTCGGCTCAGCTGCAC
TGCCTCATCGGGCTCTACTCCATGTCCACCAACCTCTTTGAGCATGCGGA
GAGGCAGTTCGTCGTGTGCGTGAGTGAGACCAGCGAGCGAGACCTGAAAC
TGTTTGCCAACCTCAACCTGGCGATCATTTATCTGCGCACCAAGCGGGAC
ACGGACCTCAAGCAAATCCTGGATGCCGTCTCAACGGAAAACACGCACAC
GTATAGCAGTCAAGCGCTGATGGGAGGCTTCTACTACGTCCAGGGACTGC
ATGCTTTTCACAAAAATAGCTTCCACGAGGCGAAACGCTTTCTGCGTGAA
ACTCTGAAAATGGCCAACGCCGAAGACCTCAACCGACTGACCAGCTGCTC
GTTGGTTTTGCTATCGCACGTCTTTCTCAGCATCGGAAACTCAAAGGAAA
GCATGAACATGGTGACGCCGGCCATGCAACTGGCCAGTAAGATACCCGAC
ATCCACGTCCAGCTGTGGGGATCGGCAATACTAAAGGACCTGCATCGTAT
GTCAAAGGATGTGCAGCATGAAAAAGATGCTTATGCTAACCACGTTAAAT
ACTCGGAGAACCTGATTGCAGACCAGCGCAAGTGCGTCCAAAGTGCGCAT
CACGAACTCGTCAACTGGTTCCAGGGCGATCCGCCAGTGACGAGTGGTCC
GCCGGCTGCTCCCGTCCTGCTCATGCCAGAGTCCTCCGTTACAGCCTCAG
TCCCCGTCATCGCCTCCACATCGACAGCCATGCAGCCGGCGGGGCAATAC
GGTCAGTTCTACGCAAGCTTTCTAGACCAT
BO10444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-RA | 1899 | CG4203-PA | 1..1896 | 17..1912 | 9480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-RA | 2086 | CG4203-RA | 93..1992 | 13..1912 | 9485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15209296..15210717 | 13..1434 | 7095 | 99.9 | Plus |
| 3R | 32079331 | 3R | 15210776..15211253 | 1435..1912 | 2390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:14:57 has no hits.
BO10444.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:14 Download gff for
BO10444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 95..1990 | 17..1914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:03 Download gff for
BO10444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 97..1992 | 17..1914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:05 Download gff for
BO10444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 97..1992 | 17..1914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:05 Download gff for
BO10444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15209300..15210717 | 17..1434 | 100 | -> | Plus |
| 3R | 15210776..15211253 | 1435..1914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:03 Download gff for
BO10444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11036498..11036975 | 1435..1914 | 99 | | Plus |
| arm_3R | 11035022..11036439 | 17..1434 | 100 | -> | Plus |
BO10444.5prime Sequence
626 bp (511 high quality bases) assembled on 2006-04-19
> BO10444.5prime
GAAGTTACCCTTCAACATGAGTGCATCGACGAGCACGTCGACGGCGGCGT
CCCAGGACGCCTGCTACATATCGCTCCTTGGCCTGGCGGAGTACTTCCGC
ACCTCGCAGCCGCCGAACATCAAGAAATGCATCCAGTGTCTTCAAGCCCT
GTTCACATTTATGCCGCCCTCGAAGGTCGAGGCGCGGACACATTTGCAGA
TGGGCCAGATCCTGATGGCCTACACTAAGAACATCGATCTGGCGCGCCAG
CATTTGGAGAAGGCGTGGAGCATATCCGAACCGCTGCCCAATTTCGACGT
TAAGTTCGACACCGCCTCGCTGCTGGCCCAACTGCATCTGCAGACGGACA
GAAACTCGCATCAGGCCAAGGCGATGCTCCGGCGGGCCGTGGAACTGTCG
CAAAACAACGTCTATTGGCACTGCAAGCTGCTGCTCCAGCTGGCCCAAAT
ACATGCCAGCGATTCGCGAGTACTCGCTGGCCTCCGAACTGCTGGCCGTG
GGCGCGGAAAGTGCCGACGAGGCGAGCGCCACGTACCTGAAAGTGCTCTT
CCTGCTCTCGCGCGCCATGATCCTTATGATCGAGCGCAAGACCATCGACG
TGCTCGCCCTGCTCAACTCCGCCGGC
BO10444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-PA | 1899 | CG4203-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
| CG4203-PA | 1899 | CG4203-RA | 447..609 | 464..626 | 790 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-RA | 2086 | CG4203-RA | 97..705 | 17..626 | 3010 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15209300..15209908 | 17..626 | 2985 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:30:13 has no hits.
BO10444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:07 Download gff for
BO10444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-PA | 1..609 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:10 Download gff for
BO10444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-PA | 1..609 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:11 Download gff for
BO10444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 92..705 | 9..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:02:19 Download gff for
BO10444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 92..705 | 9..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:02:19 Download gff for
BO10444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15209295..15209908 | 9..626 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:11 Download gff for
BO10444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11035017..11035630 | 9..626 | 99 | | Plus |
BO10444.3prime Sequence
863 bp (830 high quality bases) assembled on 2006-04-19
> BO10444.3prime
ATGGTCTAGAAAGCTTGCGTAGAACTGACCGTATTGCCCCGCCGGCTGCA
TGGCTGTCGATGTGGAGGCGATGACGGGGACTGAGGCTGTAACGGAGGAC
TCTGGCATGAGCAGGACGGGAGCAGCCGGCGGACCACTCGTCACTGGCGG
ATCGCCCTGGAACCAGTTGACGAGTTCGTGATGCGCACTTTGGACGCACT
TGCGCTGGTCTGCAATCAGGTTCTCCGAGTATTTAACGTGGTTAGCATAA
GCATCTTTTTCATGCTGCACATCCTTTGACATACGATGCAGGTCCTTTAG
TATTGCCGATCCCCACAGCTGGACGTGGATGTCGGGTATCTTACTGGCCA
GTTGCATGGCCGGCGTCACCATGTTCATGCTTTCCTTTGAGTTTCCGATG
CTGAGAAAGACGTGCGATAGCAAAACCAACGAGCAGCTGGTCAGTCGGTT
GAGGTCTTCGGCGTTGGCCATTTTCAGAGTTTCACGCAGAAAGCGTTTCG
CCTCGTGGAAGCTATTTTTGTGAAAAGCATGCAGTCCCTGGACGTAGTAG
AAGCCTCCCATCAGCGCTTGACTGCTATACGTGTGCGTGTTTTCCGTTGA
GACGGCATCCAGGATTTGCTTGAGGTCCGTGTCCCGCTTGGTGCGCAGAT
AAATGATCGCCAGGTTGAGGTTGGCAAACAGTTTCAGGTCTCGCTCGCTG
GTCTCACTCACGCACACGACGAACTGCCTCTCCGCATGCTCAAAGAGGTT
GGTGGACATGGAGTAGAGCCCGATGAGGCAGTGCAGCTGAGCCGAGTGTC
GCCGTAGCAGGCTGCGTTGCGGAGCGGCCATGCAAACGTCTCTCGCGGCT
GCTATTTTCCGGA
BO10444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-PA | 1899 | CG4203-RA | 1052..1896 | 863..19 | 4200 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-RA | 2086 | CG4203-RA | 1148..1992 | 863..19 | 4210 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15210776..15211253 | 496..19 | 2390 | 100 | Minus |
| 3R | 32079331 | 3R | 15210351..15210717 | 863..497 | 1820 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:24:51 has no hits.
BO10444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:05 Download gff for
BO10444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-PA | 1053..1899 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:09 Download gff for
BO10444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-PA | 1053..1899 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:27:17 Download gff for
BO10444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 1149..1998 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:04:02 Download gff for
BO10444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 1149..1998 | 15..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:04:02 Download gff for
BO10444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15210352..15210717 | 497..862 | 99 | -> | Minus |
| 3R | 15210776..15211259 | 15..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:27:17 Download gff for
BO10444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11036074..11036439 | 497..862 | 99 | -> | Minus |
| arm_3R | 11036498..11036981 | 15..496 | 99 | | Minus |
BO10444.pep Sequence
Translation from 16 to 1930
> BO10444.pep
MSASTSTSTAASQDACYISLLGLAEYFRTSQPPNIKKCIQCLQALFTFMP
PSKVEARTHLQMGQILMAYTKNIDLARQHLEKAWSISEPLPNFDVKFDTA
SLLAQLHLQTDRNSHQAKAMLRRAVELSQNNVYWHCKLLLQLAQIHASDR
EYSLASELLAVGAESADEASATYLKVLFLLSRAMILMIERKTNDVLALLN
SAGQIIDNNIPNPHQKEYLKVFFLVLQVCYYLALGQVKTVKPSLKQLQMS
IQTIMAPNWPSDEAIFGANQLEMFVWLPKEQLYVLVYLVTVSHSMMAGYM
DKAQKYTEKALTQIEKLKQQEDKPILSVFKVILLEHIVMCRMVMGNRELA
IREIAAARDVCMAAPQRSLLRRHSAQLHCLIGLYSMSTNLFEHAERQFVV
CVSETSERDLKLFANLNLAIIYLRTKRDTDLKQILDAVSTENTHTYSSQA
LMGGFYYVQGLHAFHKNSFHEAKRFLRETLKMANAEDLNRLTSCSLVLLS
HVFLSIGNSKESMNMVTPAMQLASKIPDIHVQLWGSAILKDLHRMSKDVQ
HEKDAYANHVKYSENLIADQRKCVQSAHHELVNWFQGDPPVTSGPPAAPV
LLMPESSVTASVPVIASTSTAMQPAGQYGQFYASFLDH
BO10444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-PA | 632 | CG4203-PA | 1..632 | 1..632 | 3224 | 100 | Plus |
