Clone Sequence Records
BO10445.3prime Sequence
899 bp (849 high quality bases) assembled on 2006-04-19
> BO10445.3prime
ATGGTCTAGAAAGCTTGCGCTTTGCTTCTGGAGCTTGTAAGTCGGCATGA
ACGGAATATAGTAGGTCCACTTCCAACGACGAATGGCATCCATGCCAAGT
GGAAAATCGTAGTCGGTGGCTGTGCCATCATTAACATTATCATCGCCCAG
GGGCATCTCGTTTGCCCAGTCGATTAGGCCCCTCTCCTCCGGCGTCCCTG
GGATTATATTGTCCAGCAAGCATCCCAAAACTCCACCCACGAGAATTGTA
GTGCCCAGTAGCACCGATAACGTTGAGTCCACGGTCTTGTTTCCGGTGTC
AATAGCTCCAGGGTTCTTCTGCATCCAGCGGCACAATACCATCGGGAAAA
ATATTGAGAGCCCCAATATGTAAAGATTCCTTGCGGATCGCAGATCCACA
TACTGCAAGGTGGATAGCCCAAAAGCTATAATCATGCCAAACATCACACA
AAAGATTCCGCCCACCACCGAGTCGGGAATGAGAATGAAAATGGCTCCAA
ACTTTCCAATTACCCCCTGGAGGACCATTATCAAGGCAGCCCACTGTATT
ACACGTCGGGATCCAATCTTGGTGACCCCGATGGCGCCAACATTCTCTCC
AAAGGTATTGGTTCCATTTCCAGCTCCCCACAGACCGGCGAGGACAGTGC
CAAAGCCCTCGGTACCGATCCCGCGATTGATCGCATGGAGCGGAGGCGAG
TGGGCGCCGGACATCTGTGACACCGTTGGATAGTAACTAAGTGACTCCAC
CGTACAGGCAAGTACTCCGGCCAACATGCCAAGCACGCCGGACAGCGTCA
CCGATGGCCAGCCAAACTGTCCCGGATACGGGACATAGAACCACTTTGCA
CTGGTCAGCACATTCAGGCGAACATCGGTGCGAGAAGGATGTGACGGAG
BO10445.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-PA | 1722 | CG6293-RA | 839..1719 | 899..19 | 4405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 2601 | CG6293-RB | 958..1838 | 899..19 | 4405 | 100 | Minus |
| CG6293-RA | 2144 | CG6293-RA | 958..1838 | 899..19 | 4405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10308569..10309119 | 19..569 | 2755 | 100 | Plus |
| 3R | 32079331 | 3R | 10309182..10309513 | 568..899 | 1660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:48:54 has no hits.
BO10445.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:07 Download gff for
BO10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-PA | 839..1722 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:12 Download gff for
BO10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-PA | 839..1722 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:25:48 Download gff for
BO10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 958..1838 | 19..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:31 Download gff for
BO10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 958..1838 | 19..899 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:31 Download gff for
BO10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10308569..10309117 | 19..567 | 100 | <- | Plus |
| 3R | 10309182..10309513 | 568..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:25:48 Download gff for
BO10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6134291..6134839 | 19..567 | 100 | <- | Plus |
| arm_3R | 6134904..6135235 | 568..899 | 100 | | Plus |
BO10445.5prime Sequence
900 bp (782 high quality bases) assembled on 2006-04-19
> BO10445.5prime
GAAGTTATCAGTCGACATGGAGCTGAACAATGTTACCATCGAGGACGCCA
CAGATGCTTCCAAGTCCTACTCTCAAGCAGCTAACACGCCTCCAAGTAAT
GAGAAACCCAAGCCGCAACTGCTCTACGCCATCAACGATAATCCCCCATG
GTACTTGAGCATCTTCCTCGCATTCCAGCACTACCTGACCATGATTGGAG
CCATTGTTTCCATACCTTTCATCCTGACGCCGGCGTTGTGCATGTCCGAT
GAGGACGCCAACCGGGGCATCATCATCTCTACGATGATCTTCGTCACGGG
CATCGTTACCTACTTCCAGGCCACGTGGGGCGTCCGTTTGCCCATTGTTC
AGGGCGGAACTATATCGTTCTTGGTGCCCACCCTTGCCATCTTGGCCCTG
CCGCAGTGGAAGTGCCCGGAGCAAGCCGTAATGGATGCCATGGACGAGGC
TGAGCGGGAGGAACTATGGCAAGTGCGTATGCGGGAGCTATCCGGCGCTA
TTGCCGTGTCCGCCATGGTGCAAGTTATCCTGGGCTACACTGGTCTGGTG
GGAAAAATCCTTAAGTACGTAACTCCATTGACCATTGTACCCACTGTGTC
CCTGGTGGGTCTTACCCTATTCGAGCACGCAGCTGAAACCGCATCCAAGC
ATTGGGGCATTGCTGTGGGAACCACTGGAATGCTGACACTCTTTTCGCAN
ATAATGTCGAATGTTCCCGTGCCTATCTTGGCCTACCGCAAGGGTCACGG
CTTGGAAATTCGCCAGTTCCAGTTGTTCCGCCTCTTTCCCGTCCTGCTGA
CCATCATGATAATGTGGGGTCTGTGCGGAATTCTGACTGCTACGGATGTC
TTTCCTCCGTCACATCCTTCTCGCACCGATGTTCGCCTGAATGTGCTGAC
BO10445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-PA | 1722 | CG6293-RA | 1..884 | 17..900 | 4401 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 2601 | CG6293-RB | 119..1003 | 16..900 | 4414 | 99.9 | Plus |
| CG6293-RA | 2144 | CG6293-RA | 119..1003 | 16..900 | 4414 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10309899..10310518 | 669..50 | 3100 | 100 | Minus |
| 3R | 32079331 | 3R | 10309468..10309699 | 900..669 | 1149 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:39:31 has no hits.
BO10445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:08 Download gff for
BO10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:13 Download gff for
BO10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:13 Download gff for
BO10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 110..1003 | 8..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:58 Download gff for
BO10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 110..1003 | 8..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:58 Download gff for
BO10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10309468..10309698 | 670..900 | 99 | <- | Minus |
| 3R | 10309899..10310518 | 50..669 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:13 Download gff for
BO10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6135190..6135420 | 670..900 | 99 | <- | Minus |
| arm_3R | 6135621..6136240 | 50..669 | 100 | <- | Minus |
BO10445.complete Sequence
1753 bp (1753 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631760
> BO10445.complete
GAAGTTATCAGTCGACATGGAGCTGAACAATGTTACCATCGAGGACGCCA
CAGATGCTTCCAAGTCCTACTCTCAAGCAGCTAACACGCCTCCAAGTAAT
GAGAAACCCAAGCCGCAACTGCTCTACGCCATCAACGATAATCCCCCATG
GTACTTGAGCATCTTCCTCGCATTCCAGCACTACCTGACCATGATTGGAG
CCATTGTTTCCATACCTTTCATCCTGACGCCGGCGTTGTGCATGTCCGAT
GAGGACGCCAACCGGGGCATCATCATCTCTACGATGATCTTCGTCACGGG
CATCGTTACCTACTTCCAGGCCACGTGGGGCGTCCGTTTGCCCATTGTTC
AGGGCGGAACTATATCGTTCTTGGTGCCCACCCTTGCCATCTTGGCCCTG
CCGCAGTGGAAGTGCCCGGAGCAAGCCGTAATGGATGCCATGGACGAGGC
TGAGCGGGAGGAACTATGGCAAGTGCGTATGCGGGAGCTATCCGGCGCTA
TTGCCGTGTCCGCCATGGTGCAAGTTATCCTGGGCTACACTGGTCTGGTG
GGAAAAATCCTTAAGTACGTAACTCCATTGACCATTGTACCCACTGTGTC
CCTGGTGGGTCTTACCCTATTCGAGCACGCAGCTGAAACCGCATCCAAGC
ATTGGGGCATTGCTGTGGGAACCACTGGAATGCTGACACTCTTTTCGCAA
ATAATGTCGAATGTTCCCGTGCCTATCTTGGCCTACCGCAAGGGTCACGG
CTTGGAAATTCGCCAGTTCCAGTTGTTCCGCCTCTTTCCCGTCCTGCTGA
CCATCATGATAATGTGGGGTCTGTGCGGAATTCTGACTGCTACGGATGTC
TTTCCTCCGTCACATCCTTCTCGCACCGATGTTCGCCTGAATGTGCTGAC
CAGTGCAAAGTGGTTCTATGTCCCGTATCCGGGACAGTTTGGCTGGCCAT
CGGTGACGCTGTCCGGCGTGCTTGGCATGTTGGCCGGAGTACTTGCCTGT
ACGGTGGAGTCACTTAGTTACTATCCAACGGTGTCACAGATGTCCGGCGC
CCACTCGCCTCCGCTCCATGCGATCAATCGCGGGATCGGTACCGAGGGCT
TTGGCACTGTCCTCGCCGGTCTGTGGGGAGCTGGAAATGGAACCAATACC
TTTGGAGAGAATGTTGGCGCCATCGGGGTCACCAAGATTGGATCCCGACG
TGTAATACAGTGGGCTGCCTTGATAATGGTCCTCCAGGGGGTAATTGGAA
AGTTTGGAGCCATTTTCATTCTCATTCCCGACTCGGTGGTGGGCGGAATC
TTTTGTGTGATGTTTGGCATGATTATAGCTTTTGGGCTATCCACCTTGCA
GTATGTGGATCTGCGATCCGCAAGGAATCTTTACATATTGGGGCTCTCAA
TATTTTTCCCGATGGTATTGTGCCGCTGGATGCAGAAGAACCCTGGAGCT
ATTGACACCGGAAACAAGACCGTGGACTCAACGTTATCGGTGCTACTGGG
CACTACAATTCTCGTGGGTGGAGTTTTGGGATGCTTGCTGGACAATATAA
TCCCAGGGACGCCGGAGGAGAGGGGCCTAATCGACTGGGCAAACGAGATG
CCCCTGGGCGATGATAATGTTAATGATGGCACAGCCACCGACTACGATTT
TCCACTTGGCATGGATGCCATTCGTCGTTGGAAGTGGACCTACTATATTC
CGTTCATGCCGACTTACAAGCTCCAGAAGCAAAGCGCAAGCTTTCTAGAC
CAT
BO10445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 1722 | CG6293-PB | 1..1719 | 17..1735 | 8595 | 100 | Plus |
| CG6293-RA | 1722 | CG6293-PA | 1..1719 | 17..1735 | 8595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 2601 | CG6293-RB | 119..1838 | 16..1735 | 8600 | 100 | Plus |
| CG6293-RA | 2144 | CG6293-RA | 119..1838 | 16..1735 | 8600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10309899..10310518 | 669..50 | 3100 | 100 | Minus |
| 3R | 32079331 | 3R | 10308569..10309119 | 1735..1185 | 2755 | 100 | Minus |
| 3R | 32079331 | 3R | 10309182..10309699 | 1186..669 | 2590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:01:36 has no hits.
BO10445.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:44 Download gff for
BO10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 1..1722 | 17..1738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:10 Download gff for
BO10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 92..1820 | 8..1735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:14 Download gff for
BO10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 120..1838 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:44 Download gff for
BO10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 92..1820 | 8..1735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:59 Download gff for
BO10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 120..1838 | 17..1737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:59 Download gff for
BO10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10308566..10309117 | 1187..1737 | 99 | <- | Minus |
| 3R | 10309182..10309698 | 670..1186 | 100 | <- | Minus |
| 3R | 10309899..10310518 | 50..669 | 100 | <- | Minus |
| 3R | 10311462..10311494 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:14 Download gff for
BO10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6134288..6134839 | 1187..1737 | 99 | <- | Minus |
| arm_3R | 6134904..6135420 | 670..1186 | 100 | <- | Minus |
| arm_3R | 6135621..6136240 | 50..669 | 100 | <- | Minus |
| arm_3R | 6137184..6137216 | 17..49 | 100 | | Minus |
BO10445.pep Sequence
Translation from 16 to 1753
> BO10445.pep
MELNNVTIEDATDASKSYSQAANTPPSNEKPKPQLLYAINDNPPWYLSIF
LAFQHYLTMIGAIVSIPFILTPALCMSDEDANRGIIISTMIFVTGIVTYF
QATWGVRLPIVQGGTISFLVPTLAILALPQWKCPEQAVMDAMDEAEREEL
WQVRMRELSGAIAVSAMVQVILGYTGLVGKILKYVTPLTIVPTVSLVGLT
LFEHAAETASKHWGIAVGTTGMLTLFSQIMSNVPVPILAYRKGHGLEIRQ
FQLFRLFPVLLTIMIMWGLCGILTATDVFPPSHPSRTDVRLNVLTSAKWF
YVPYPGQFGWPSVTLSGVLGMLAGVLACTVESLSYYPTVSQMSGAHSPPL
HAINRGIGTEGFGTVLAGLWGAGNGTNTFGENVGAIGVTKIGSRRVIQWA
ALIMVLQGVIGKFGAIFILIPDSVVGGIFCVMFGMIIAFGLSTLQYVDLR
SARNLYILGLSIFFPMVLCRWMQKNPGAIDTGNKTVDSTLSVLLGTTILV
GGVLGCLLDNIIPGTPEERGLIDWANEMPLGDDNVNDGTATDYDFPLGMD
AIRRWKWTYYIPFMPTYKLQKQSASFLDH
BO10445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-PB | 573 | CG6293-PB | 1..573 | 1..573 | 2994 | 100 | Plus |
| CG6293-PA | 573 | CG6293-PA | 1..573 | 1..573 | 2994 | 100 | Plus |
