Clone BO10446 Report

Search the DGRC for BO10446

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptssp-RA
Protein status:BO10446.pep: validated full length
Sequenced Size:1138

Clone Sequence Records

BO10446.3prime Sequence

914 bp (772 high quality bases) assembled on 2006-04-19

> BO10446.3prime
ATGGTCTAGAAAGCTTGCTGCATGTGCGCCGCCTTTGGGATTAGATAGAA
GATCCATGAAGTCCTTATGAAACGACGACATCTCTCGCACGAAAAATTTC
ATCAGTTTGCATTTTTTCCTCTCTATGACCAGCTTTTCCTCCTCTATTTC
CATAATTCTGGCAGCTCTTTGACGCTTAGCAATTTTCATGTCCTCGGTCT
TGGAATTCTGTTGATCGAGCTCGTCTTCATAGTTTTCCTGGGAATGAACT
GTGGACGACTCTTCGATTTCCCTGATTATGTTATCCTTCAGAATACGCAG
TTCATCCACGTCTTCTTGTGCTTCATCCGCATATTCGTTCATATCGAAGC
TATCCCCTTCTCCAGGGTGTACTTTTTGGGACCTTAAGTAGTTCCTATCT
ATCAATGGTTCGTCAAGTTGACTGCCAAATGAATTGTGTTCGCTGGTCGT
ATTGGGTGCACTTCCAGACTTATCCAGAGGCATATTGTCAATTATGTTAC
GATCGGAACTAAATATCATCTTCATGGTCTCGAAGTATTCCCACTGGGAT
TTGTGTCCAGTTGTCTTTTCCATGTGCGATTCTCGCCGATACTGTTGGCC
CATGTCATCAATTTTGTTCTTTATCTCCGTGAACGTGAAACCCAGTGACT
TCATCTCGCCCGTCATTTTCCAGATAACCTGGACCCGCTTGCGTGAGTCT
CGCAAATCGACGCAGTGCCTTGCCCAAAGCTCGAGCAGCAGTTCGACCGC
GTGGAATGACCACTCGGACGGCTGAAAGGAGTTCCAGCTCAGGCGGCGCT
CCAACGAATCGTCTAGTTTAGGGGGATGGATTTCCGCGATCCCCTCCTCG
CACAGTTCCTCGGTACGCAGGTAGTCCACATGGCACTTGTGGGTGCGCAG
ATTGGACGTGTTGA

BO10446.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17153-PA 1107 CG17153-RA 209..1104 914..19 4480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-RA 1412 CG17153-RA 267..1162 914..19 4480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12118971..12119539 587..19 2845 100 Minus
3L 28110227 3L 12118688..12118912 810..586 1125 100 Minus
3L 28110227 3L 12118523..12118627 914..810 525 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:53:55 has no hits.

BO10446.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:09 Download gff for BO10446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17153-PA 210..1107 15..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:14 Download gff for BO10446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17153-PA 210..1107 15..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:45:24 Download gff for BO10446.3prime
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 268..1165 15..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:08 Download gff for BO10446.3prime
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 268..1165 15..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:08 Download gff for BO10446.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12118524..12118626 811..913 100 -> Minus
3L 12118688..12118911 587..810 100 -> Minus
3L 12118972..12119542 15..586 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:45:24 Download gff for BO10446.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12111624..12111726 811..913 100 -> Minus
arm_3L 12111788..12112011 587..810 100 -> Minus
arm_3L 12112072..12112642 15..586 99   Minus

BO10446.5prime Sequence

928 bp (757 high quality bases) assembled on 2006-04-19

> BO10446.5prime
GAAGTTATCAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAA
AATTCGAATCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTAC
CGGCTACTACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGA
AATCGTGCGCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGG
GCTGCAAGCGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCAC
AAGTGCCATGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGAT
CGCGGAAATCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGA
GCTGGAACTCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTG
CTGCTCGAGCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAA
GCGGGTCCAGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTT
TCACGTTCACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTAT
CGGCGAGAATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGA
ATACTTCGAGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTG
ACAATATGCCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAA
CACAATTCATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTA
CTTAAGGTCCCCAAAAGTACACCCTGGAGAAGGGGATAGCTTCGATATGA
ACGAATATGCGGATGAAGCACAAGAAGACGTGGATGAACTGCGTATTCTG
AAGGATAACATAATCAGGGAAATCGAAGAGTCGTCCACAGTTCATTCCCA
GGAAAACTATGAAGACGAGCTCGATCAA

BO10446.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17153-PA 1107 CG17153-RA 1..912 17..928 4535 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-RA 1412 CG17153-RA 55..970 13..928 4565 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12118971..12119347 552..928 1870 99.7 Plus
3L 28110227 3L 12118311..12118627 13..329 1585 100 Plus
3L 28110227 3L 12118688..12118912 329..553 1125 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:00:46 has no hits.

BO10446.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:10 Download gff for BO10446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17153-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:16 Download gff for BO10446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17153-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:53 Download gff for BO10446.5prime
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 55..968 13..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:46 Download gff for BO10446.5prime
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 55..968 13..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:46 Download gff for BO10446.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12118311..12118626 13..328 100 -> Plus
3L 12118688..12118911 329..552 100 -> Plus
3L 12118972..12119345 553..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:53 Download gff for BO10446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12111411..12111726 13..328 100 -> Plus
arm_3L 12111788..12112011 329..552 100 -> Plus
arm_3L 12112072..12112445 553..926 99   Plus

BO10446.complete Sequence

1138 bp (1138 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631761

> BO10446.complete
GAAGTTATCAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAA
AATTCGAATCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTAC
CGGCTACTACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGA
AATCGTGCGCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGG
GCTGCAAGCGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCAC
AAGTGCCATGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGAT
CGCGGAAATCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGA
GCTGGAACTCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTG
CTGCTCGAGCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAA
GCGGGTCCAGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTT
TCACGTTCACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTAT
CGGCGAGAATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGA
ATACTTCGAGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTG
ACAATATGCCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAA
CACAATTCATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTA
CTTAAGGTCCCAAAAAGTACACCCTGGAGAAGGGGATAGCTTCGATATGA
ACGAATATGCGGATGAAGCACAAGAAGACGTGGATGAACTGCGTATTCTG
AAGGATAACATAATCAGGGAAATCGAAGAGTCGTCCACAGTTCATTCCCA
GGAAAACTATGAAGACGAGCTCGATCAACAGAATTCCAAGACCGAGGACA
TGAAAATTGCTAAGCGTCAAAGAGCTGCCAGAATTATGGAAATAGAGGAG
GAAAAGCTGGTCATAGAGAGGAAAAAATGCAAACTGATGAAATTTTTCGT
GCGAGAGATGTCGTCGTTTCATAAGGACTTCATGGATCTTCTATCTAATC
CCAAAGGCGGCGCACATGCAGCAAGCTTTCTAGACCAT

BO10446.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-RA 1107 CG17153-PA 1..1104 17..1120 5520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-RA 1412 CG17153-RA 55..1162 13..1120 5540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12118971..12119539 552..1120 2845 100 Plus
3L 28110227 3L 12118311..12118627 13..329 1585 100 Plus
3L 28110227 3L 12118688..12118912 329..553 1125 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:02:14 has no hits.

BO10446.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:38 Download gff for BO10446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 1..1107 17..1124 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:12 Download gff for BO10446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 69..1179 13..1124 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:08 Download gff for BO10446.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 59..1162 17..1122 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:38 Download gff for BO10446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 69..1179 13..1124 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:30 Download gff for BO10446.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 59..1162 17..1122 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:30 Download gff for BO10446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12118315..12118626 17..328 100 -> Plus
3L 12118688..12118911 329..552 100 -> Plus
3L 12118972..12119539 553..1122 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:08 Download gff for BO10446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12111415..12111726 17..328 100 -> Plus
arm_3L 12111788..12112011 329..552 100 -> Plus
arm_3L 12112072..12112639 553..1122 99   Plus

BO10446.pep Sequence

Translation from 16 to 1138

> BO10446.pep
MIEARTMQDVSKFESNQVISAKVLRGEYRLLRRKQRGSVWKVYREIVRTD
GAIINGLYFCTGCKRVMRSFNTSNLRTHKCHVDYLRTEELCEEGIAEIHP
PKLDDSLERRLSWNSFQPSEWSFHAVELLLELWARHCVDLRDSRKRVQVI
WKMTGEMKSLGFTFTEIKNKIDDMGQQYRRESHMEKTTGHKSQWEYFETM
KMIFSSDRNIIDNMPLDKSGSAPNTTSEHNSFGSQLDEPLIDRNYLRSQK
VHPGEGDSFDMNEYADEAQEDVDELRILKDNIIREIEESSTVHSQENYED
ELDQQNSKTEDMKIAKRQRAARIMEIEEEKLVIERKKCKLMKFFVREMSS
FHKDFMDLLSNPKGGAHAASFLDH

BO10446.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-PA 368 CG17153-PA 1..368 1..368 1931 100 Plus
l(3)j2D3-PA 391 CG6801-PA 154..388 121..361 270 29.4 Plus
CG11560-PA 303 CG11560-PA 23..97 14..86 210 54.7 Plus
CG34116-PA 211 CG34116-PA 8..84 19..91 156 39.7 Plus