Clone Sequence Records
BO10446.3prime Sequence
914 bp (772 high quality bases) assembled on 2006-04-19
> BO10446.3prime
ATGGTCTAGAAAGCTTGCTGCATGTGCGCCGCCTTTGGGATTAGATAGAA
GATCCATGAAGTCCTTATGAAACGACGACATCTCTCGCACGAAAAATTTC
ATCAGTTTGCATTTTTTCCTCTCTATGACCAGCTTTTCCTCCTCTATTTC
CATAATTCTGGCAGCTCTTTGACGCTTAGCAATTTTCATGTCCTCGGTCT
TGGAATTCTGTTGATCGAGCTCGTCTTCATAGTTTTCCTGGGAATGAACT
GTGGACGACTCTTCGATTTCCCTGATTATGTTATCCTTCAGAATACGCAG
TTCATCCACGTCTTCTTGTGCTTCATCCGCATATTCGTTCATATCGAAGC
TATCCCCTTCTCCAGGGTGTACTTTTTGGGACCTTAAGTAGTTCCTATCT
ATCAATGGTTCGTCAAGTTGACTGCCAAATGAATTGTGTTCGCTGGTCGT
ATTGGGTGCACTTCCAGACTTATCCAGAGGCATATTGTCAATTATGTTAC
GATCGGAACTAAATATCATCTTCATGGTCTCGAAGTATTCCCACTGGGAT
TTGTGTCCAGTTGTCTTTTCCATGTGCGATTCTCGCCGATACTGTTGGCC
CATGTCATCAATTTTGTTCTTTATCTCCGTGAACGTGAAACCCAGTGACT
TCATCTCGCCCGTCATTTTCCAGATAACCTGGACCCGCTTGCGTGAGTCT
CGCAAATCGACGCAGTGCCTTGCCCAAAGCTCGAGCAGCAGTTCGACCGC
GTGGAATGACCACTCGGACGGCTGAAAGGAGTTCCAGCTCAGGCGGCGCT
CCAACGAATCGTCTAGTTTAGGGGGATGGATTTCCGCGATCCCCTCCTCG
CACAGTTCCTCGGTACGCAGGTAGTCCACATGGCACTTGTGGGTGCGCAG
ATTGGACGTGTTGA
BO10446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17153-PA | 1107 | CG17153-RA | 209..1104 | 914..19 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-RA | 1412 | CG17153-RA | 267..1162 | 914..19 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12118971..12119539 | 587..19 | 2845 | 100 | Minus |
3L | 28110227 | 3L | 12118688..12118912 | 810..586 | 1125 | 100 | Minus |
3L | 28110227 | 3L | 12118523..12118627 | 914..810 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:53:55 has no hits.
BO10446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:09 Download gff for
BO10446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-PA | 210..1107 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:14 Download gff for
BO10446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-PA | 210..1107 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:45:24 Download gff for
BO10446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 268..1165 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:08 Download gff for
BO10446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 268..1165 | 15..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:08 Download gff for
BO10446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12118524..12118626 | 811..913 | 100 | -> | Minus |
3L | 12118688..12118911 | 587..810 | 100 | -> | Minus |
3L | 12118972..12119542 | 15..586 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:45:24 Download gff for
BO10446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12111624..12111726 | 811..913 | 100 | -> | Minus |
arm_3L | 12111788..12112011 | 587..810 | 100 | -> | Minus |
arm_3L | 12112072..12112642 | 15..586 | 99 | | Minus |
BO10446.5prime Sequence
928 bp (757 high quality bases) assembled on 2006-04-19
> BO10446.5prime
GAAGTTATCAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAA
AATTCGAATCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTAC
CGGCTACTACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGA
AATCGTGCGCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGG
GCTGCAAGCGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCAC
AAGTGCCATGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGAT
CGCGGAAATCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGA
GCTGGAACTCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTG
CTGCTCGAGCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAA
GCGGGTCCAGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTT
TCACGTTCACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTAT
CGGCGAGAATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGA
ATACTTCGAGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTG
ACAATATGCCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAA
CACAATTCATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTA
CTTAAGGTCCCCAAAAGTACACCCTGGAGAAGGGGATAGCTTCGATATGA
ACGAATATGCGGATGAAGCACAAGAAGACGTGGATGAACTGCGTATTCTG
AAGGATAACATAATCAGGGAAATCGAAGAGTCGTCCACAGTTCATTCCCA
GGAAAACTATGAAGACGAGCTCGATCAA
BO10446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17153-PA | 1107 | CG17153-RA | 1..912 | 17..928 | 4535 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-RA | 1412 | CG17153-RA | 55..970 | 13..928 | 4565 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12118971..12119347 | 552..928 | 1870 | 99.7 | Plus |
3L | 28110227 | 3L | 12118311..12118627 | 13..329 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 12118688..12118912 | 329..553 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:00:46 has no hits.
BO10446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:10 Download gff for
BO10446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:16 Download gff for
BO10446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:53 Download gff for
BO10446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 55..968 | 13..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:46 Download gff for
BO10446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 55..968 | 13..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:46 Download gff for
BO10446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12118311..12118626 | 13..328 | 100 | -> | Plus |
3L | 12118688..12118911 | 329..552 | 100 | -> | Plus |
3L | 12118972..12119345 | 553..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:53 Download gff for
BO10446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12111411..12111726 | 13..328 | 100 | -> | Plus |
arm_3L | 12111788..12112011 | 329..552 | 100 | -> | Plus |
arm_3L | 12112072..12112445 | 553..926 | 99 | | Plus |
BO10446.complete Sequence
1138 bp (1138 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631761
> BO10446.complete
GAAGTTATCAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAA
AATTCGAATCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTAC
CGGCTACTACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGA
AATCGTGCGCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGG
GCTGCAAGCGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCAC
AAGTGCCATGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGAT
CGCGGAAATCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGA
GCTGGAACTCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTG
CTGCTCGAGCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAA
GCGGGTCCAGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTT
TCACGTTCACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTAT
CGGCGAGAATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGA
ATACTTCGAGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTG
ACAATATGCCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAA
CACAATTCATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTA
CTTAAGGTCCCAAAAAGTACACCCTGGAGAAGGGGATAGCTTCGATATGA
ACGAATATGCGGATGAAGCACAAGAAGACGTGGATGAACTGCGTATTCTG
AAGGATAACATAATCAGGGAAATCGAAGAGTCGTCCACAGTTCATTCCCA
GGAAAACTATGAAGACGAGCTCGATCAACAGAATTCCAAGACCGAGGACA
TGAAAATTGCTAAGCGTCAAAGAGCTGCCAGAATTATGGAAATAGAGGAG
GAAAAGCTGGTCATAGAGAGGAAAAAATGCAAACTGATGAAATTTTTCGT
GCGAGAGATGTCGTCGTTTCATAAGGACTTCATGGATCTTCTATCTAATC
CCAAAGGCGGCGCACATGCAGCAAGCTTTCTAGACCAT
BO10446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-RA | 1107 | CG17153-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-RA | 1412 | CG17153-RA | 55..1162 | 13..1120 | 5540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12118971..12119539 | 552..1120 | 2845 | 100 | Plus |
3L | 28110227 | 3L | 12118311..12118627 | 13..329 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 12118688..12118912 | 329..553 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:02:14 has no hits.
BO10446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:38 Download gff for
BO10446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-RA | 1..1107 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:12 Download gff for
BO10446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-RA | 69..1179 | 13..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:08 Download gff for
BO10446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 59..1162 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:38 Download gff for
BO10446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-RA | 69..1179 | 13..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:30 Download gff for
BO10446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 59..1162 | 17..1122 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:30 Download gff for
BO10446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12118315..12118626 | 17..328 | 100 | -> | Plus |
3L | 12118688..12118911 | 329..552 | 100 | -> | Plus |
3L | 12118972..12119539 | 553..1122 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:08 Download gff for
BO10446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12111415..12111726 | 17..328 | 100 | -> | Plus |
arm_3L | 12111788..12112011 | 329..552 | 100 | -> | Plus |
arm_3L | 12112072..12112639 | 553..1122 | 99 | | Plus |
BO10446.pep Sequence
Translation from 16 to 1138
> BO10446.pep
MIEARTMQDVSKFESNQVISAKVLRGEYRLLRRKQRGSVWKVYREIVRTD
GAIINGLYFCTGCKRVMRSFNTSNLRTHKCHVDYLRTEELCEEGIAEIHP
PKLDDSLERRLSWNSFQPSEWSFHAVELLLELWARHCVDLRDSRKRVQVI
WKMTGEMKSLGFTFTEIKNKIDDMGQQYRRESHMEKTTGHKSQWEYFETM
KMIFSSDRNIIDNMPLDKSGSAPNTTSEHNSFGSQLDEPLIDRNYLRSQK
VHPGEGDSFDMNEYADEAQEDVDELRILKDNIIREIEESSTVHSQENYED
ELDQQNSKTEDMKIAKRQRAARIMEIEEEKLVIERKKCKLMKFFVREMSS
FHKDFMDLLSNPKGGAHAASFLDH
BO10446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-PA | 368 | CG17153-PA | 1..368 | 1..368 | 1931 | 100 | Plus |
l(3)j2D3-PA | 391 | CG6801-PA | 154..388 | 121..361 | 270 | 29.4 | Plus |
CG11560-PA | 303 | CG11560-PA | 23..97 | 14..86 | 210 | 54.7 | Plus |
CG34116-PA | 211 | CG34116-PA | 8..84 | 19..91 | 156 | 39.7 | Plus |