Clone Sequence Records
BO10447.3prime Sequence
830 bp (828 high quality bases) assembled on 2006-04-19
> BO10447.3prime
ATGGTCTAGAAAGCTTGCATTGCGCAATTGGGCAGATGATTTCGGCAGAG
ATTGAATACGCTGGCGACGCTTTGCTTCGAACTCCGTAGCCAGCTGCCAT
GTTTCTTTGTCCAACGTATCCTTCCCCCGGGCGATGCCCAGCAGCCGTGA
GAGGACCAGCAATCCATGCAGATCATCGGCATTACTTTTGACATTAGCTT
TACGCATGTCCACGAAATCCTGCTGGATCATTTCAGTGTGCTCCTCGCTC
ACGTTGAAGCCGCTAGTGCGCGCTGTGGTCAAGTACTTGCGAAACTGCTG
CAGACGTGATGGCTGCAGATAGTGGTGGGCTGCCTTTAGAGATTCATCAA
CAAGTTCCACGGCCTTAGAATCGGCATTAATGGGCAGCACAAAATCGCTC
GGCAACATACTTCGCCCTTCACTGAGCACGAGAACTGGAATATTTGCTTG
GTAGTCTATTTGGTAATACTGAAAGTCGCACTTCAGTTCCTGATTATTGA
TCAAGTGCGCTAAATGCTGAACGGCATGAACACCATTGGCCTCCAGCTTG
CCCTGTTGCATGCACGTCTCGTCGAGCACCAAATGCGTATGGGGAGCCAA
CTGTAGTACGCCGGAAACCAGCTTGTTTGTCTCATAATCCTTCTTTGGGG
CAAAGGCTGCCGTGTTTAGTGTGACGAGAGTCATGGGCATGTAATGGCTG
GCCGGCAGTAGCAGCTCCAGAATTTGATACAACTTGGTTGCATACGCCTC
ACAATTCTTAGGGAGATTACAAAGGTTAAGGGCGAACTTGCCGATGCTCT
GCATCTCAGAACGACTGTAGACCGTAGATA
BO10447.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3430-PA | 1818 | CG3430-RA | 1004..1815 | 830..19 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3430-RA | 1973 | CG3430-RA | 1094..1905 | 830..19 | 4060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6958655..6959036 | 400..19 | 1910 | 100 | Minus |
| 2L | 23513712 | 2L | 6958346..6958589 | 643..400 | 1220 | 100 | Minus |
| 2L | 23513712 | 2L | 6958101..6958288 | 830..643 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:53:06 has no hits.
BO10447.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:12 Download gff for
BO10447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-PA | 1005..1818 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:18 Download gff for
BO10447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-PA | 1005..1818 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:28:01 Download gff for
BO10447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-RA | 1095..1909 | 14..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:22:05 Download gff for
BO10447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-RA | 1095..1909 | 14..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:22:05 Download gff for
BO10447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6958102..6958287 | 644..829 | 100 | -> | Minus |
| 2L | 6958346..6958589 | 400..643 | 100 | -> | Minus |
| 2L | 6958656..6959040 | 14..399 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:28:01 Download gff for
BO10447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6958102..6958287 | 644..829 | 100 | -> | Minus |
| arm_2L | 6958346..6958589 | 400..643 | 100 | -> | Minus |
| arm_2L | 6958656..6959040 | 14..399 | 99 | | Minus |
BO10447.5prime Sequence
879 bp (877 high quality bases) assembled on 2006-04-19
> BO10447.5prime
GAAGTTATCAGTCGACATGCCCTGTGCGATGGAGCTGCCCAGCACGCCCG
ATGAACTGGCCGCCCAGCAAGCGGACAGCGCTGCACTCAAGGACTTGCTC
AAGGATCCCAGTCGTTGGCACTCGATTCCCCTGCTCAACTACACGCCTCT
TCACAAGCTGAAGGATCAGACTCTGGTGCGCTTTCGTGGAATGATCCAGG
ACATGATGGACCCAGAAATCTATCTGGAGCGCTACGAAGTGAAATCCGCC
GACGGCAGCAAACGTGTACAGGAAGGAAAGTACAGGGACTGCTTGAAAAT
AGCCAATGGCGAAGTGATTGACTACAACGCCGATGGAAACGTGCATGGAG
AGAGGCGTACCATGTTCGTGGTCTCTGTGCCTGGTCTGAACGATTGGAGC
AAGGAGCATGAGAAGCTGTGCTGTCCCCAGATCGATTTGGCCAGTCTGGG
TCAATCTCCCAGTTCAGCCAAGAAGCGGACTATTGTAGGCGAAGAAGAAG
CCATGGATGTGGACGTTGCGAGCGAAACAACGTTCAAGCGACCCTGCCTA
AAAGAGATTCAAAAAGATAGCGAGCCAGTCGGCGCCTCCAAATCCTCTGT
TCTTGGGTCTGATTACCTGATTAACTCGCCTCTGCCGGATCGTCCCAGCA
TGGCATGCATGGTAAAGGTTTACGAGGAGTTCGATACCTACCAGCTTAAC
TCGCTGGTCGACTTTGTGGGCTTTCTGTCAGTGGATGCTTCACTAGACGC
CGCTACCCTGGAAATAGACGATTGTGAAAACTTGAGTGAACTGCAGGCAG
CTCATCCATCGCCATTTCTTATACCCCGCCTGCATGCCTTCGGAGTCCAG
GTGCTGCCGCATGCCAATCCGCTGCTGGA
BO10447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3430-PA | 1818 | CG3430-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3430-RA | 1973 | CG3430-RA | 91..953 | 17..879 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6957098..6957960 | 17..879 | 4315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:50:20 has no hits.
BO10447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:12 Download gff for
BO10447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:19 Download gff for
BO10447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:14 Download gff for
BO10447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-RA | 91..952 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:18:06 Download gff for
BO10447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-RA | 91..952 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:18:06 Download gff for
BO10447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6957098..6957959 | 17..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:14 Download gff for
BO10447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6957098..6957959 | 17..878 | 100 | | Plus |
BO10447.complete Sequence
1849 bp (1849 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631762
> BO10447.complete
GAAGTTATCAGTCGACATGCCCTGTGCGATGGAGCTGCCCAGCACGCCCG
ATGAACTGGCCGCCCAGCAAGCGGACAGCGCTGCACTCAAGGACTTGCTC
AAGGATCCCAGTCGTTGGCACTCGATTCCCCTGCTCAACTACACGCCTCT
TCACAAGCTGAAGGATCAGACTCTGGTGCGCTTTCGTGGAATGATCCAGG
ACATGATGGACCCAGAAATCTATCTGGAGCGCTACGAAGTGAAATCCGCC
GACGGCAGCAAACGTGTACAGGAAGGAAAGTACAGGGACTGCTTGAAAAT
AGCCAATGGCGAAGTGATTGACTACAACGCCGATGGAAACGTGCATGGAG
AGAGGCGTACCATGTTCGTGGTCTCTGTGCCTGGTCTGAACGATTGGAGC
AAGGAGCATGAGAAGCTGTGCTGTCCCCAGATCGATTTGGCCAGTCTGGG
TCAATCTCCCAGTTCAGCCAAGAAGCGGACTATTGTAGGCGAAGAAGAAG
CCATGGATGTGGACGTTGCGAGCGAAACAACGTTCAAGCGACCCTGCCTA
AAAGAGATTCAAAAAGATAGCGAGCCAGTCGGCGCCTCCAAATCCTCTGT
TCTTGGGTCTGATTACCTGATTAACTCGCCTCTGCCGGATCGTCCCAGCA
TGGCATGCATGGTAAAGGTTTACGAGGAGTTCGATACCTACCAGCTTAAC
TCGCTGGTCGACTTTGTGGGCTTTCTGTCAGTGGATGCTTCACTAGACGC
CGCTACCCTGGAAATAGACGATTGTGAAAACTTGAGTGAACTGCAGGCAG
CTCATCCATCGCCATTTCTTATACCCCGCCTGCATGCCTTCGGAGTCCAG
GTGCTGCCGCATGCCAATCCGCTGCTGGACAAAAGCCTTCGACAGCCAAC
GGAAATATGTGAGGAGACGTATCCAACCCACCTTGCTGTGCACAAAGATC
TGCGCATGCTTCTTAAACTCTGCCTCTTTGATGACGATCTGGCTGCCGAG
TATTTGCTCTCCCACCTAATATCTACGGTCTACAGTCGTTCTGAGATGCA
GAGCATCGGCAAGTTCGCCCTTAACCTTTGTAATCTCCCTAAGAATTGTG
AGGCGTATGCAACCAAGTTGTATCAAATTCTGGAGCTGCTACTGCCGGCC
AGCCATTACATGCCCATGACTCTCGTCACACTAAACACGGCAGCCTTTGC
CCCAAAGAAGGATTATGAGACAAACAAGCTGGTTTCCGGCGTACTACAGT
TGGCTCCCCATACGCATTTGGTGCTCGACGAGACGTGCATGCAACAGGGC
AAGCTGGAGGCCAATGGTGTTCATGCCGTTCAGCATTTAGCGCACTTGAT
CAATAATCAGGAACTGAAGTGCGACTTTCAGTATTACCAAATAGACTACC
AAGCAAATATTCCAGTTCTCGTGCTCAGTGAAGGGCGAAGTATGTTGCCG
AGCGATTTTGTGCTGCCCATTAATGCCGATTCTAAGGCCGTGGAACTTGT
TGATGAATCTCTAAAGGCAGCCCACCACTATCTGCAGCCATCACGTCTGC
AGCAGTTTCGCAAGTACTTGACCACAGCGCGCACTAGCGGCTTCAACGTG
AGCGAGGAGCACACTGAAATGATCCAGCAGGATTTCGTGGACATGCGTAA
AGCTAATGTCAAAAGTAATGCCGATGATCTGCATGGATTGCTGGTCCTCT
CACGGCTGCTGGGCATCGCCCGGGGGAAGGATACGTTGGACAAAGAAACA
TGGCAGCTGGCTACGGAGTTCGAAGCAAAGCGTCGCCAGCGTATTCAATC
TCTGCCGAAATCATCTGCCCAATTGCGCAATGCAAGCTTTCTAGACCAT
BO10447.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3430-RA | 1818 | CG3430-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3430-RA | 1973 | CG3430-RA | 91..1905 | 17..1831 | 9075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6957098..6958288 | 17..1207 | 5955 | 100 | Plus |
| 2L | 23513712 | 2L | 6958655..6959036 | 1450..1831 | 1910 | 100 | Plus |
| 2L | 23513712 | 2L | 6958346..6958589 | 1207..1450 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:46:35 has no hits.
BO10447.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:45 Download gff for
BO10447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-RA | 1..1818 | 17..1835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:11 Download gff for
BO10447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-RA | 89..1907 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:22 Download gff for
BO10447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-RA | 91..1905 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:45 Download gff for
BO10447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-RA | 89..1907 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:01 Download gff for
BO10447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3430-RA | 91..1905 | 17..1833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:01 Download gff for
BO10447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6957098..6958287 | 17..1206 | 100 | -> | Plus |
| 2L | 6958346..6958589 | 1207..1450 | 100 | -> | Plus |
| 2L | 6958656..6959036 | 1451..1833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:22 Download gff for
BO10447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6957098..6958287 | 17..1206 | 100 | -> | Plus |
| arm_2L | 6958346..6958589 | 1207..1450 | 100 | -> | Plus |
| arm_2L | 6958656..6959036 | 1451..1833 | 99 | | Plus |
BO10447.pep Sequence
Translation from 16 to 1849
> BO10447.pep
MPCAMELPSTPDELAAQQADSAALKDLLKDPSRWHSIPLLNYTPLHKLKD
QTLVRFRGMIQDMMDPEIYLERYEVKSADGSKRVQEGKYRDCLKIANGEV
IDYNADGNVHGERRTMFVVSVPGLNDWSKEHEKLCCPQIDLASLGQSPSS
AKKRTIVGEEEAMDVDVASETTFKRPCLKEIQKDSEPVGASKSSVLGSDY
LINSPLPDRPSMACMVKVYEEFDTYQLNSLVDFVGFLSVDASLDAATLEI
DDCENLSELQAAHPSPFLIPRLHAFGVQVLPHANPLLDKSLRQPTEICEE
TYPTHLAVHKDLRMLLKLCLFDDDLAAEYLLSHLISTVYSRSEMQSIGKF
ALNLCNLPKNCEAYATKLYQILELLLPASHYMPMTLVTLNTAAFAPKKDY
ETNKLVSGVLQLAPHTHLVLDETCMQQGKLEANGVHAVQHLAHLINNQEL
KCDFQYYQIDYQANIPVLVLSEGRSMLPSDFVLPINADSKAVELVDESLK
AAHHYLQPSRLQQFRKYLTTARTSGFNVSEEHTEMIQQDFVDMRKANVKS
NADDLHGLLVLSRLLGIARGKDTLDKETWQLATEFEAKRRQRIQSLPKSS
AQLRNASFLDH
BO10447.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3430-PA | 605 | CG3430-PA | 1..605 | 1..605 | 3129 | 100 | Plus |
