Clone Sequence Records
BO10449.3prime Sequence
903 bp (821 high quality bases) assembled on 2006-04-19
> BO10449.3prime
ATGGTCTAGAAAGCTTGCTCTACGGTTTTTATACAATAAATATGTTTTCA
TTGATAAAGGAAGTTGAAGCTGTTGAATGTGCTCCTCCAAGTTTGTGCGA
CCAATTTTTTGACGAATTGTTCTTCGGCAAAGATCCATTAGGGGCAAGGG
TTCGGGATCTAATCCACCAATGTAACGCATTGTTATTTCACAGTGTCCCC
AGACCGCCGAAACAATTGGATATAGTTTTTTCCCTCGCAGTCCTCTAAAC
GCAATACCGAGGTACTGCTGATCAACAATGAAGCTTAGTGTTCCTTCGTC
CATATCTAACGCTACTAAGAACTTATCTGGAACTAAAAAAGCTTCGTCGT
TTTTAAGAATTGCTGGATATGTCACTCCAGCGCAGTTTTTTGAGTCATGG
TATAATTTATTTCTTCCTAAGTCCCAGCCCCAACTTTGTTCAGTTGATCC
AACTAAACTTTGGTAGCCAACTGAATGTAAAGGTGCATCTGCAGTGCATA
CGCCAACAACAGCGTGGGTTCCTCTTTGCCTTGTTGGCCAATAAATTTCC
CAAATATGCAATCCCTTTGTAAGTCCGACTTTTCCGCGAATACAGTCAGT
ACTTTGAGCCACTGGGTGCCTATGAAATGTCAACTTGTCGTCCTCTTTTA
CAAAAATGTTAAGAGACCGATCTTCGGAGTTCCATGAATGCTTCAATTGA
AGATCTCGAGATGCTGGCGGCATATCAAGTAATATATCGATTCGCGCTGG
TTTAACGAAATCAGCTTGCAACTCTCTTGGTATTATTGGTTTAAATGTAG
ACTGTGAATCATTGCGACTAACTGTTTTGACTCCGCCACTAATTTTTTGA
CCCATGTTCATGCCACGGCAGCTTCTGGATCTTCTTTGGCCGATTGCAAT
TTT
BO10449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2944-PC | 1032 | gus-RC | 145..1029 | 903..19 | 4400 | 99.8 | Minus |
CG2944-PD | 1092 | gus-RD | 205..1089 | 903..19 | 4400 | 99.8 | Minus |
CG2944-PB | 1032 | gus-RB | 145..1029 | 903..19 | 4400 | 99.8 | Minus |
CG2944-PE | 1056 | gus-RE | 169..1053 | 903..19 | 4400 | 99.8 | Minus |
CG2944-PA | 1050 | gus-RA | 163..1047 | 903..19 | 4400 | 99.8 | Minus |
CG2944-PF | 846 | gus-RF | 1..843 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gus-RM | 1525 | CG2944-RM | 307..1191 | 903..19 | 4410 | 99.9 | Minus |
gus-RL | 1933 | CG2944-RL | 596..1480 | 903..19 | 4410 | 99.9 | Minus |
gus-RK | 1813 | CG2944-RK | 476..1360 | 903..19 | 4410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5120763..5121510 | 156..903 | 3725 | 99.9 | Plus |
2R | 25286936 | 2R | 5117666..5117802 | 19..155 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:08:49 has no hits.
BO10449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:16 Download gff for
BO10449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2944-PB | 145..1032 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:23 Download gff for
BO10449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2944-PA | 163..1050 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:15 Download gff for
BO10449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-RK | 476..1369 | 10..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:25 Download gff for
BO10449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-RK | 476..1369 | 10..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:25 Download gff for
BO10449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5117656..5117802 | 10..155 | 97 | <- | Plus |
2R | 5120763..5121510 | 156..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:15 Download gff for
BO10449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1005161..1005307 | 10..155 | 97 | <- | Plus |
arm_2R | 1008268..1009015 | 156..903 | 99 | | Plus |
BO10449.5prime Sequence
873 bp (784 high quality bases) assembled on 2006-04-19
> BO10449.5prime
GAAGTTATCAGTCGACATGGAATTTGGTAAAAAAAGGTATAAGGGTGGTC
GGACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCA
TCTATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAG
GGAGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAA
GATCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGA
GTCAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAAT
ACCAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATAT
TACTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGG
AACTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTT
GACATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAA
AAGTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACA
AGGCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACC
TTTACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTT
GGGGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGC
GCTGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGT
TCCAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAAGAACACTAAGCT
TCATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGG
AAAAAACTATATCCAATTGTTTC
BO10449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2944-PA | 1050 | gus-RA | 1..857 | 17..873 | 4260 | 99.8 | Plus |
CG2944-PC | 1032 | gus-RC | 3..839 | 37..873 | 4160 | 99.8 | Plus |
CG2944-PD | 1092 | gus-RD | 63..899 | 37..873 | 4160 | 99.8 | Plus |
CG2944-PB | 1032 | gus-RB | 3..839 | 37..873 | 4160 | 99.8 | Plus |
CG2944-PE | 1056 | gus-RE | 27..863 | 37..873 | 4160 | 99.8 | Plus |
CG2944-PF | 846 | gus-RF | 1..653 | 221..873 | 3240 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gus-RG | 1745 | CG2944-RG | 246..1102 | 17..873 | 4270 | 99.9 | Plus |
gus-RL | 1933 | CG2944-RL | 451..1290 | 34..873 | 4185 | 99.9 | Plus |
gus-RM | 1525 | CG2944-RM | 165..1001 | 37..873 | 4170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5120816..5121655 | 873..34 | 4185 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:29:54 has no hits.
BO10449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:17 Download gff for
BO10449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:24 Download gff for
BO10449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2944-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:09 Download gff for
BO10449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-RG | 246..1102 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:01:21 Download gff for
BO10449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-RG | 246..1102 | 17..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:01:21 Download gff for
BO10449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5120816..5121652 | 37..873 | 99 | <- | Minus |
2R | 5121983..5122002 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:09 Download gff for
BO10449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1008321..1009157 | 37..873 | 99 | <- | Minus |
arm_2R | 1009488..1009507 | 17..36 | 100 | | Minus |
BO10449.complete Sequence
1081 bp (1081 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631763
> BO10449.complete
GAAGTTATCAGTCGACATGGAATTTGGTAAAAAAAGGTATAAGGGTGGTC
GGACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCA
TCTATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAG
GGAGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAA
GATCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGA
GTCAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAAT
ACCAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATAT
TACTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGG
AACTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTT
GACATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAA
AAGTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACA
AGGCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACC
TTTACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTT
GGGGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGC
GCTGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGT
TCCAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCT
TCATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGG
AAAAAACTATATCCAATTGTTTCGGCGGTCTGGGGACACTGTGAAATAAC
AATGCGTTACATTGGTGGATTAGATCCCGAACCCTTGCCCCTAATGGATC
TTTGCCGAAGAACAATTCGTCAAAAAATTGGTCGCACAAACTTGGAGGAG
CACATTCAACAGCTTCAACTTCCTTTATCAATGAAAACATATTTATTGTA
TAAAAACCGTAGAGCAAGCTTTCTAGACCAT
BO10449.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gus-RM | 840 | CG2944-PM | 1..837 | 227..1063 | 4185 | 100 | Plus |
gus-RL | 840 | CG2944-PL | 1..837 | 227..1063 | 4185 | 100 | Plus |
gus-RK | 840 | CG2944-PK | 1..837 | 227..1063 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gus-RG | 1745 | CG2944-RG | 246..1292 | 17..1063 | 5235 | 100 | Plus |
gus-RL | 1933 | CG2944-RL | 451..1480 | 34..1063 | 5150 | 100 | Plus |
gus-RM | 1525 | CG2944-RM | 165..1191 | 37..1063 | 5135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5120763..5121655 | 926..34 | 4465 | 100 | Minus |
2R | 25286936 | 2R | 5117666..5117802 | 1063..927 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:47:52 has no hits.
BO10449.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:39 Download gff for
BO10449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-RA | 1..1050 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:14 Download gff for
BO10449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-RA | 249..1304 | 17..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:52 Download gff for
BO10449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-RG | 246..1292 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:40 Download gff for
BO10449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-RF | 249..268 | 17..36 | 100 | -> | Plus |
gus-RF | 457..1492 | 37..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:24 Download gff for
BO10449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gus-RG | 246..1292 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:24 Download gff for
BO10449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5117664..5117802 | 927..1065 | 98 | <- | Minus |
2R | 5120763..5121652 | 37..926 | 100 | <- | Minus |
2R | 5121983..5122002 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:52 Download gff for
BO10449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1005169..1005307 | 927..1065 | 98 | <- | Minus |
arm_2R | 1008268..1009157 | 37..926 | 100 | <- | Minus |
arm_2R | 1009488..1009507 | 17..36 | 100 | | Minus |
BO10449.pep Sequence
Translation from 16 to 1081
> BO10449.pep
MEFGKKRYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFERL
RLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQ
ADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRH
PVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVG
YQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFL
VALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIG
GLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNRRA
SFLDH
BO10449.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gus-PM | 279 | CG2944-PM | 1..279 | 71..349 | 1486 | 100 | Plus |
gus-PL | 279 | CG2944-PL | 1..279 | 71..349 | 1486 | 100 | Plus |
gus-PK | 279 | CG2944-PK | 1..279 | 71..349 | 1486 | 100 | Plus |
gus-PJ | 279 | CG2944-PJ | 1..279 | 71..349 | 1486 | 100 | Plus |
gus-PI | 279 | CG2944-PI | 1..279 | 71..349 | 1486 | 100 | Plus |