Clone BO10449 Report

Search the DGRC for BO10449

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptgus-RA
Protein status:BO10449.pep: validated full length
Sequenced Size:1081

Clone Sequence Records

BO10449.3prime Sequence

903 bp (821 high quality bases) assembled on 2006-04-19

> BO10449.3prime
ATGGTCTAGAAAGCTTGCTCTACGGTTTTTATACAATAAATATGTTTTCA
TTGATAAAGGAAGTTGAAGCTGTTGAATGTGCTCCTCCAAGTTTGTGCGA
CCAATTTTTTGACGAATTGTTCTTCGGCAAAGATCCATTAGGGGCAAGGG
TTCGGGATCTAATCCACCAATGTAACGCATTGTTATTTCACAGTGTCCCC
AGACCGCCGAAACAATTGGATATAGTTTTTTCCCTCGCAGTCCTCTAAAC
GCAATACCGAGGTACTGCTGATCAACAATGAAGCTTAGTGTTCCTTCGTC
CATATCTAACGCTACTAAGAACTTATCTGGAACTAAAAAAGCTTCGTCGT
TTTTAAGAATTGCTGGATATGTCACTCCAGCGCAGTTTTTTGAGTCATGG
TATAATTTATTTCTTCCTAAGTCCCAGCCCCAACTTTGTTCAGTTGATCC
AACTAAACTTTGGTAGCCAACTGAATGTAAAGGTGCATCTGCAGTGCATA
CGCCAACAACAGCGTGGGTTCCTCTTTGCCTTGTTGGCCAATAAATTTCC
CAAATATGCAATCCCTTTGTAAGTCCGACTTTTCCGCGAATACAGTCAGT
ACTTTGAGCCACTGGGTGCCTATGAAATGTCAACTTGTCGTCCTCTTTTA
CAAAAATGTTAAGAGACCGATCTTCGGAGTTCCATGAATGCTTCAATTGA
AGATCTCGAGATGCTGGCGGCATATCAAGTAATATATCGATTCGCGCTGG
TTTAACGAAATCAGCTTGCAACTCTCTTGGTATTATTGGTTTAAATGTAG
ACTGTGAATCATTGCGACTAACTGTTTTGACTCCGCCACTAATTTTTTGA
CCCATGTTCATGCCACGGCAGCTTCTGGATCTTCTTTGGCCGATTGCAAT
TTT

BO10449.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2944-PC 1032 gus-RC 145..1029 903..19 4400 99.8 Minus
CG2944-PD 1092 gus-RD 205..1089 903..19 4400 99.8 Minus
CG2944-PB 1032 gus-RB 145..1029 903..19 4400 99.8 Minus
CG2944-PE 1056 gus-RE 169..1053 903..19 4400 99.8 Minus
CG2944-PA 1050 gus-RA 163..1047 903..19 4400 99.8 Minus
CG2944-PF 846 gus-RF 1..843 861..19 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
gus-RM 1525 CG2944-RM 307..1191 903..19 4410 99.9 Minus
gus-RL 1933 CG2944-RL 596..1480 903..19 4410 99.9 Minus
gus-RK 1813 CG2944-RK 476..1360 903..19 4410 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5120763..5121510 156..903 3725 99.9 Plus
2R 25286936 2R 5117666..5117802 19..155 685 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:08:49 has no hits.

BO10449.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:16 Download gff for BO10449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2944-PB 145..1032 15..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:23 Download gff for BO10449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2944-PA 163..1050 15..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:20:15 Download gff for BO10449.3prime
Subject Subject Range Query Range Percent Splice Strand
gus-RK 476..1369 10..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:25 Download gff for BO10449.3prime
Subject Subject Range Query Range Percent Splice Strand
gus-RK 476..1369 10..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:25 Download gff for BO10449.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5117656..5117802 10..155 97 <- Plus
2R 5120763..5121510 156..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:20:15 Download gff for BO10449.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1005161..1005307 10..155 97 <- Plus
arm_2R 1008268..1009015 156..903 99   Plus

BO10449.5prime Sequence

873 bp (784 high quality bases) assembled on 2006-04-19

> BO10449.5prime
GAAGTTATCAGTCGACATGGAATTTGGTAAAAAAAGGTATAAGGGTGGTC
GGACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCA
TCTATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAG
GGAGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAA
GATCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGA
GTCAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAAT
ACCAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATAT
TACTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGG
AACTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTT
GACATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAA
AAGTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACA
AGGCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACC
TTTACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTT
GGGGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGC
GCTGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGT
TCCAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAAGAACACTAAGCT
TCATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGG
AAAAAACTATATCCAATTGTTTC

BO10449.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2944-PA 1050 gus-RA 1..857 17..873 4260 99.8 Plus
CG2944-PC 1032 gus-RC 3..839 37..873 4160 99.8 Plus
CG2944-PD 1092 gus-RD 63..899 37..873 4160 99.8 Plus
CG2944-PB 1032 gus-RB 3..839 37..873 4160 99.8 Plus
CG2944-PE 1056 gus-RE 27..863 37..873 4160 99.8 Plus
CG2944-PF 846 gus-RF 1..653 221..873 3240 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
gus-RG 1745 CG2944-RG 246..1102 17..873 4270 99.9 Plus
gus-RL 1933 CG2944-RL 451..1290 34..873 4185 99.9 Plus
gus-RM 1525 CG2944-RM 165..1001 37..873 4170 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5120816..5121655 873..34 4185 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 09:29:54 has no hits.

BO10449.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:17 Download gff for BO10449.5prime
Subject Subject Range Query Range Percent Splice Strand
gus-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:24 Download gff for BO10449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2944-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:09 Download gff for BO10449.5prime
Subject Subject Range Query Range Percent Splice Strand
gus-RG 246..1102 17..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:01:21 Download gff for BO10449.5prime
Subject Subject Range Query Range Percent Splice Strand
gus-RG 246..1102 17..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:01:21 Download gff for BO10449.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5120816..5121652 37..873 99 <- Minus
2R 5121983..5122002 17..36 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:09 Download gff for BO10449.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1008321..1009157 37..873 99 <- Minus
arm_2R 1009488..1009507 17..36 100   Minus

BO10449.complete Sequence

1081 bp (1081 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631763

> BO10449.complete
GAAGTTATCAGTCGACATGGAATTTGGTAAAAAAAGGTATAAGGGTGGTC
GGACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCA
TCTATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAG
GGAGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAA
GATCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGA
GTCAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAAT
ACCAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATAT
TACTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGG
AACTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTT
GACATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAA
AAGTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACA
AGGCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACC
TTTACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTT
GGGGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGC
GCTGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGT
TCCAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCT
TCATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGG
AAAAAACTATATCCAATTGTTTCGGCGGTCTGGGGACACTGTGAAATAAC
AATGCGTTACATTGGTGGATTAGATCCCGAACCCTTGCCCCTAATGGATC
TTTGCCGAAGAACAATTCGTCAAAAAATTGGTCGCACAAACTTGGAGGAG
CACATTCAACAGCTTCAACTTCCTTTATCAATGAAAACATATTTATTGTA
TAAAAACCGTAGAGCAAGCTTTCTAGACCAT

BO10449.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
gus-RM 840 CG2944-PM 1..837 227..1063 4185 100 Plus
gus-RL 840 CG2944-PL 1..837 227..1063 4185 100 Plus
gus-RK 840 CG2944-PK 1..837 227..1063 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
gus-RG 1745 CG2944-RG 246..1292 17..1063 5235 100 Plus
gus-RL 1933 CG2944-RL 451..1480 34..1063 5150 100 Plus
gus-RM 1525 CG2944-RM 165..1191 37..1063 5135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5120763..5121655 926..34 4465 100 Minus
2R 25286936 2R 5117666..5117802 1063..927 685 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:47:52 has no hits.

BO10449.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:39 Download gff for BO10449.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RA 1..1050 17..1067 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:14 Download gff for BO10449.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RA 249..1304 17..1072 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:52 Download gff for BO10449.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RG 246..1292 17..1065 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:40 Download gff for BO10449.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RF 249..268 17..36 100 -> Plus
gus-RF 457..1492 37..1072 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:24 Download gff for BO10449.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RG 246..1292 17..1065 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:24 Download gff for BO10449.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5117664..5117802 927..1065 98 <- Minus
2R 5120763..5121652 37..926 100 <- Minus
2R 5121983..5122002 17..36 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:52 Download gff for BO10449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1005169..1005307 927..1065 98 <- Minus
arm_2R 1008268..1009157 37..926 100 <- Minus
arm_2R 1009488..1009507 17..36 100   Minus

BO10449.pep Sequence

Translation from 16 to 1081

> BO10449.pep
MEFGKKRYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFERL
RLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQ
ADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRH
PVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVG
YQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFL
VALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIG
GLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNRRA
SFLDH

BO10449.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
gus-PM 279 CG2944-PM 1..279 71..349 1486 100 Plus
gus-PL 279 CG2944-PL 1..279 71..349 1486 100 Plus
gus-PK 279 CG2944-PK 1..279 71..349 1486 100 Plus
gus-PJ 279 CG2944-PJ 1..279 71..349 1486 100 Plus
gus-PI 279 CG2944-PI 1..279 71..349 1486 100 Plus