Clone BO10450 Report

Search the DGRC for BO10450

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptAtg5-RA
Protein status:BO10450.pep: validated full length
Sequenced Size:841

Clone Sequence Records

BO10450.3prime Sequence

839 bp (816 high quality bases) assembled on 2006-04-19

> BO10450.3prime
ATGGTCTAGAAAGCTTGCAACATCCTTGTAGTCCACCGATAAATGCAAAA
AGTTGTCGGGATAGCTCAGATGCTCGGACATCCATTGCAGTTGGGTCTCC
TCGTGTAGATCAATGCCGTGCGTGCGACATCCAACCGCTCTGCGCACAGG
TGTCGATAATTCGGCCATTAAATCGGCCAAACTCTTCTTTTGTCCGCCCA
CGCTGATCGGTGAAATCAGTTTCTGGGTGTACGTGAAGTCATCGTCTGTA
TAGATTCGCAGGGGAATGTTTTTGAAGGACTCCAAATCGCCATACGGTTC
CATTAGCCTCCGATTGACGGCCCAGAACTGATCGAACTTTTCGTTGACCA
ATCCCAGCCAAAGCTGATTGTGGTCCTTCTTTTGCATAGCGGATATGACC
AGGCCGCGGTGCTTAAGCACATCTGCCTCCTTCAGGCAGGACATGTAGTG
CGATTCAAGTAGCTCCTTGGAGTTGAGCTTGACGAGCATGTCCTCGGGGA
ACTTGGAGAAGTGAATGGTGAGGCACCAGGGCGTGCTGTCCTCCTCCGGA
TGCAGCAGATCGTATAGGACACCAATTGGATAGTGAAGTCGCAGGGGCGT
TCCATTGAAGTCGAACCACACAGCTCCATCCTGGTGTTCGGCGCTTATAT
AGCGTGAGAAGTACTTGCGAACCTTGTCAGTCACCAAAGGCAAGTAGCTG
AGTCGCGATATCATCAGATAGAAAGGCTCCGGCTTAATGCCCACGATCTC
GTCCCGATCCGCCTGGAAGCATATGCCTATCTGGCCCTCCCAGATCATTC
GCAGCACCTCGCGGTCGTGGGCCATGTCGACTGATAACT

BO10450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1643-PA 810 Atg5-RA 1..807 825..19 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-RA 1418 CG1643-RA 97..905 827..19 4045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7322556..7322782 240..466 1135 100 Plus
X 23542271 X 7323518..7323674 671..827 785 100 Plus
X 23542271 X 7315135..7315251 19..135 585 100 Plus
X 23542271 X 7323157..7323264 466..573 540 100 Plus
X 23542271 X 7322367..7322472 135..240 530 100 Plus
X 23542271 X 7323343..7323447 570..674 525 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:20:43 has no hits.

BO10450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:18 Download gff for BO10450.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:26 Download gff for BO10450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1643-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:25:04 Download gff for BO10450.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 90..912 10..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:57 Download gff for BO10450.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 90..912 10..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:57 Download gff for BO10450.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7315128..7315250 10..134 96 <- Plus
X 7322367..7322472 135..240 100 <- Plus
X 7322557..7322782 241..466 100 <- Plus
X 7323158..7323263 467..572 100 <- Plus
X 7323346..7323445 573..672 100 <- Plus
X 7323520..7323681 673..835 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:25:04 Download gff for BO10450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7209161..7209283 10..134 96 <- Plus
arm_X 7216400..7216505 135..240 100 <- Plus
arm_X 7216590..7216815 241..466 100 <- Plus
arm_X 7217191..7217296 467..572 100 <- Plus
arm_X 7217379..7217478 573..672 100 <- Plus
arm_X 7217553..7217714 673..835 97   Plus

BO10450.5prime Sequence

839 bp (821 high quality bases) assembled on 2006-04-19

> BO10450.5prime
GAAGTTATCAGTCGACATGGCCCACGACCGCGAGGTGCTGCGAATGATCT
GGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCGTG
GGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTACTT
GCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAGCG
CCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCCTG
CGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAGGA
GGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGAGG
ACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACATG
TCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATATC
CGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAACG
AAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGTAT
GGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGACGA
TGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGGAC
AAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGCGC
AGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACCCA
ACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACNACTTTTTGCATT
TATCGGTGGACTACAAGGATGTTGNCAGCTTTCTAGACC

BO10450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1643-PA 810 Atg5-RA 1..807 17..823 4016 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-RA 1418 CG1643-RA 97..905 15..823 4034 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7322556..7322782 602..376 1135 100 Minus
X 23542271 X 7323518..7323674 171..15 785 100 Minus
X 23542271 X 7315135..7315251 823..707 574 99.1 Minus
X 23542271 X 7323157..7323264 376..269 540 100 Minus
X 23542271 X 7322367..7322472 707..602 530 100 Minus
X 23542271 X 7323343..7323447 272..168 525 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:09:47 has no hits.

BO10450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:19 Download gff for BO10450.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-PA 1..810 17..824 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:27 Download gff for BO10450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1643-PA 1..810 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:30 Download gff for BO10450.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 90..912 7..832 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:44:47 Download gff for BO10450.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 90..912 7..832 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:44:47 Download gff for BO10450.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7322557..7322782 376..601 100 <- Minus
X 7323158..7323263 270..375 100 <- Minus
X 7323346..7323445 170..269 100 <- Minus
X 7323520..7323681 7..169 97   Minus
X 7315128..7315250 708..832 96 <- Minus
X 7322367..7322472 602..707 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:30 Download gff for BO10450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7209161..7209283 708..832 96 <- Minus
arm_X 7216400..7216505 602..707 100 <- Minus
arm_X 7216590..7216815 376..601 100 <- Minus
arm_X 7217191..7217296 270..375 100 <- Minus
arm_X 7217379..7217478 170..269 100 <- Minus
arm_X 7217553..7217714 7..169 97   Minus

BO10450.complete Sequence

841 bp (841 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631764

> BO10450.complete
GAAGTTATCAGTCGACATGGCCCACGACCGCGAGGTGCTGCGAATGATCT
GGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCGTG
GGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTACTT
GCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAGCG
CCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCCTG
CGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAGGA
GGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGAGG
ACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACATG
TCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATATC
CGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAACG
AAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGTAT
GGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGACGA
TGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGGAC
AAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGCGC
AGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACCCA
ACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACAACTTTTTGCATT
TATCGGTGGACTACAAGGATGTTGCAAGCTTTCTAGACCAT

BO10450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-RA 810 CG1643-PA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-RA 1418 CG1643-RA 97..905 15..823 4045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7322556..7322782 602..376 1135 100 Minus
X 23542271 X 7323518..7323674 171..15 785 100 Minus
X 23542271 X 7315135..7315251 823..707 585 100 Minus
X 23542271 X 7323157..7323264 376..269 540 100 Minus
X 23542271 X 7322367..7322472 707..602 530 100 Minus
X 23542271 X 7323343..7323447 272..168 525 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:09:46 has no hits.

BO10450.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:41 Download gff for BO10450.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 1..810 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:15 Download gff for BO10450.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 60..882 7..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:25:56 Download gff for BO10450.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 99..905 17..825 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:41 Download gff for BO10450.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 60..882 7..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:08 Download gff for BO10450.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 99..905 17..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:08 Download gff for BO10450.complete
Subject Subject Range Query Range Percent Splice Strand
X 7315131..7315250 708..825 98 <- Minus
X 7322367..7322472 602..707 100 <- Minus
X 7322557..7322782 376..601 100 <- Minus
X 7323158..7323263 270..375 100 <- Minus
X 7323346..7323445 170..269 100 <- Minus
X 7323520..7323672 17..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:25:56 Download gff for BO10450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7209164..7209283 708..825 98 <- Minus
arm_X 7216400..7216505 602..707 100 <- Minus
arm_X 7216590..7216815 376..601 100 <- Minus
arm_X 7217191..7217296 270..375 100 <- Minus
arm_X 7217379..7217478 170..269 100 <- Minus
arm_X 7217553..7217705 17..169 100   Minus

BO10450.pep Sequence

Translation from 16 to 841

> BO10450.pep
MAHDREVLRMIWEGQIGICFQADRDEIVGIKPEPFYLMISRLSYLPLVTD
KVRKYFSRYISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPW
CLTIHFSKFPEDMLVKLNSKELLESHYMSCLKEADVLKHRGLVISAMQKK
DHNQLWLGLVNEKFDQFWAVNRRLMEPYGDLESFKNIPLRIYTDDDFTYT
QKLISPISVGGQKKSLADLMAELSTPVRRAVGCRTHGIDLHEETQLQWMS
EHLSYPDNFLHLSVDYKDVASFLDH

BO10450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-PA 269 CG1643-PA 1..269 1..269 1444 100 Plus