Clone Sequence Records
BO10450.3prime Sequence
839 bp (816 high quality bases) assembled on 2006-04-19
> BO10450.3prime
ATGGTCTAGAAAGCTTGCAACATCCTTGTAGTCCACCGATAAATGCAAAA
AGTTGTCGGGATAGCTCAGATGCTCGGACATCCATTGCAGTTGGGTCTCC
TCGTGTAGATCAATGCCGTGCGTGCGACATCCAACCGCTCTGCGCACAGG
TGTCGATAATTCGGCCATTAAATCGGCCAAACTCTTCTTTTGTCCGCCCA
CGCTGATCGGTGAAATCAGTTTCTGGGTGTACGTGAAGTCATCGTCTGTA
TAGATTCGCAGGGGAATGTTTTTGAAGGACTCCAAATCGCCATACGGTTC
CATTAGCCTCCGATTGACGGCCCAGAACTGATCGAACTTTTCGTTGACCA
ATCCCAGCCAAAGCTGATTGTGGTCCTTCTTTTGCATAGCGGATATGACC
AGGCCGCGGTGCTTAAGCACATCTGCCTCCTTCAGGCAGGACATGTAGTG
CGATTCAAGTAGCTCCTTGGAGTTGAGCTTGACGAGCATGTCCTCGGGGA
ACTTGGAGAAGTGAATGGTGAGGCACCAGGGCGTGCTGTCCTCCTCCGGA
TGCAGCAGATCGTATAGGACACCAATTGGATAGTGAAGTCGCAGGGGCGT
TCCATTGAAGTCGAACCACACAGCTCCATCCTGGTGTTCGGCGCTTATAT
AGCGTGAGAAGTACTTGCGAACCTTGTCAGTCACCAAAGGCAAGTAGCTG
AGTCGCGATATCATCAGATAGAAAGGCTCCGGCTTAATGCCCACGATCTC
GTCCCGATCCGCCTGGAAGCATATGCCTATCTGGCCCTCCCAGATCATTC
GCAGCACCTCGCGGTCGTGGGCCATGTCGACTGATAACT
BO10450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1643-PA | 810 | Atg5-RA | 1..807 | 825..19 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-RA | 1418 | CG1643-RA | 97..905 | 827..19 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7322556..7322782 | 240..466 | 1135 | 100 | Plus |
X | 23542271 | X | 7323518..7323674 | 671..827 | 785 | 100 | Plus |
X | 23542271 | X | 7315135..7315251 | 19..135 | 585 | 100 | Plus |
X | 23542271 | X | 7323157..7323264 | 466..573 | 540 | 100 | Plus |
X | 23542271 | X | 7322367..7322472 | 135..240 | 530 | 100 | Plus |
X | 23542271 | X | 7323343..7323447 | 570..674 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:20:43 has no hits.
BO10450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:18 Download gff for
BO10450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:26 Download gff for
BO10450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1643-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:25:04 Download gff for
BO10450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 90..912 | 10..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:57 Download gff for
BO10450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 90..912 | 10..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:57 Download gff for
BO10450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7315128..7315250 | 10..134 | 96 | <- | Plus |
X | 7322367..7322472 | 135..240 | 100 | <- | Plus |
X | 7322557..7322782 | 241..466 | 100 | <- | Plus |
X | 7323158..7323263 | 467..572 | 100 | <- | Plus |
X | 7323346..7323445 | 573..672 | 100 | <- | Plus |
X | 7323520..7323681 | 673..835 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:25:04 Download gff for
BO10450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7209161..7209283 | 10..134 | 96 | <- | Plus |
arm_X | 7216400..7216505 | 135..240 | 100 | <- | Plus |
arm_X | 7216590..7216815 | 241..466 | 100 | <- | Plus |
arm_X | 7217191..7217296 | 467..572 | 100 | <- | Plus |
arm_X | 7217379..7217478 | 573..672 | 100 | <- | Plus |
arm_X | 7217553..7217714 | 673..835 | 97 | | Plus |
BO10450.5prime Sequence
839 bp (821 high quality bases) assembled on 2006-04-19
> BO10450.5prime
GAAGTTATCAGTCGACATGGCCCACGACCGCGAGGTGCTGCGAATGATCT
GGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCGTG
GGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTACTT
GCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAGCG
CCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCCTG
CGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAGGA
GGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGAGG
ACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACATG
TCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATATC
CGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAACG
AAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGTAT
GGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGACGA
TGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGGAC
AAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGCGC
AGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACCCA
ACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACNACTTTTTGCATT
TATCGGTGGACTACAAGGATGTTGNCAGCTTTCTAGACC
BO10450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1643-PA | 810 | Atg5-RA | 1..807 | 17..823 | 4016 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-RA | 1418 | CG1643-RA | 97..905 | 15..823 | 4034 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7322556..7322782 | 602..376 | 1135 | 100 | Minus |
X | 23542271 | X | 7323518..7323674 | 171..15 | 785 | 100 | Minus |
X | 23542271 | X | 7315135..7315251 | 823..707 | 574 | 99.1 | Minus |
X | 23542271 | X | 7323157..7323264 | 376..269 | 540 | 100 | Minus |
X | 23542271 | X | 7322367..7322472 | 707..602 | 530 | 100 | Minus |
X | 23542271 | X | 7323343..7323447 | 272..168 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:09:47 has no hits.
BO10450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:19 Download gff for
BO10450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:27 Download gff for
BO10450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1643-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:30 Download gff for
BO10450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 90..912 | 7..832 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:44:47 Download gff for
BO10450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 90..912 | 7..832 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:44:47 Download gff for
BO10450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7322557..7322782 | 376..601 | 100 | <- | Minus |
X | 7323158..7323263 | 270..375 | 100 | <- | Minus |
X | 7323346..7323445 | 170..269 | 100 | <- | Minus |
X | 7323520..7323681 | 7..169 | 97 | | Minus |
X | 7315128..7315250 | 708..832 | 96 | <- | Minus |
X | 7322367..7322472 | 602..707 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:30 Download gff for
BO10450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7209161..7209283 | 708..832 | 96 | <- | Minus |
arm_X | 7216400..7216505 | 602..707 | 100 | <- | Minus |
arm_X | 7216590..7216815 | 376..601 | 100 | <- | Minus |
arm_X | 7217191..7217296 | 270..375 | 100 | <- | Minus |
arm_X | 7217379..7217478 | 170..269 | 100 | <- | Minus |
arm_X | 7217553..7217714 | 7..169 | 97 | | Minus |
BO10450.complete Sequence
841 bp (841 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631764
> BO10450.complete
GAAGTTATCAGTCGACATGGCCCACGACCGCGAGGTGCTGCGAATGATCT
GGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCGTG
GGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTACTT
GCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAGCG
CCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCCTG
CGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAGGA
GGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGAGG
ACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACATG
TCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATATC
CGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAACG
AAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGTAT
GGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGACGA
TGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGGAC
AAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGCGC
AGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACCCA
ACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACAACTTTTTGCATT
TATCGGTGGACTACAAGGATGTTGCAAGCTTTCTAGACCAT
BO10450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-RA | 810 | CG1643-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-RA | 1418 | CG1643-RA | 97..905 | 15..823 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7322556..7322782 | 602..376 | 1135 | 100 | Minus |
X | 23542271 | X | 7323518..7323674 | 171..15 | 785 | 100 | Minus |
X | 23542271 | X | 7315135..7315251 | 823..707 | 585 | 100 | Minus |
X | 23542271 | X | 7323157..7323264 | 376..269 | 540 | 100 | Minus |
X | 23542271 | X | 7322367..7322472 | 707..602 | 530 | 100 | Minus |
X | 23542271 | X | 7323343..7323447 | 272..168 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:09:46 has no hits.
BO10450.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:41 Download gff for
BO10450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:15 Download gff for
BO10450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 60..882 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:25:56 Download gff for
BO10450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 99..905 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:41 Download gff for
BO10450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 60..882 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:08 Download gff for
BO10450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 99..905 | 17..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:08 Download gff for
BO10450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7315131..7315250 | 708..825 | 98 | <- | Minus |
X | 7322367..7322472 | 602..707 | 100 | <- | Minus |
X | 7322557..7322782 | 376..601 | 100 | <- | Minus |
X | 7323158..7323263 | 270..375 | 100 | <- | Minus |
X | 7323346..7323445 | 170..269 | 100 | <- | Minus |
X | 7323520..7323672 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:25:56 Download gff for
BO10450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7209164..7209283 | 708..825 | 98 | <- | Minus |
arm_X | 7216400..7216505 | 602..707 | 100 | <- | Minus |
arm_X | 7216590..7216815 | 376..601 | 100 | <- | Minus |
arm_X | 7217191..7217296 | 270..375 | 100 | <- | Minus |
arm_X | 7217379..7217478 | 170..269 | 100 | <- | Minus |
arm_X | 7217553..7217705 | 17..169 | 100 | | Minus |
BO10450.pep Sequence
Translation from 16 to 841
> BO10450.pep
MAHDREVLRMIWEGQIGICFQADRDEIVGIKPEPFYLMISRLSYLPLVTD
KVRKYFSRYISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPW
CLTIHFSKFPEDMLVKLNSKELLESHYMSCLKEADVLKHRGLVISAMQKK
DHNQLWLGLVNEKFDQFWAVNRRLMEPYGDLESFKNIPLRIYTDDDFTYT
QKLISPISVGGQKKSLADLMAELSTPVRRAVGCRTHGIDLHEETQLQWMS
EHLSYPDNFLHLSVDYKDVASFLDH
BO10450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-PA | 269 | CG1643-PA | 1..269 | 1..269 | 1444 | 100 | Plus |