Clone Sequence Records
BO10451.3prime Sequence
913 bp (798 high quality bases) assembled on 2006-04-19
> BO10451.3prime
ATGGTCTAGAAAGCTTGCGTAAATGACGGGATTCGGATCGCGTGGCTTGC
GAGAATACTTTAGGCCCAGATCATCGGCAATCTCGTCTATCGCCTCCAGG
GCAAAGTCCAGCTGCTCCTTGGTGTGGGCGGCTGAAAGGCAGAATCGGAT
GCGTCCTTCCATGATGGGTGTGGCCGGGAATCCAGCTCCCACCGCGGCAA
TGTGGCGAGTCGTCAAGGTGCGAACCACAGCGCCAATCTTGGAAAACAGG
TACACCAGCATGGGCACGACTGGGGAGTCCTCGTGACCGTATGTGATCAC
TCCCAGCTGAGCCAGACGTCGGCGGAAGTAACGTGTGTTCCTGGCCAGCT
GGTGGATCTTCTTGCGTCCAATGTCAGTGCCATCTTCACCCATAATGGTC
TTCATGGAGGTAAGGATTTGCTGTGCGATGGGTGGCGAGATCGAAGCAGC
ATAACAATGGGCGTGGCTGTTGGTGCGGAGAAAGTCAATCAGTTTCTTGG
ATCCAGCGAGATAGCCTCCAGCACTGCCAAAACTTTTGGTGAAGGTGCCC
ATCAGAATGTCCACCTCCTTCGGATCCACATTAAAATAATCTGTAACTCC
TCGTCCACGGGAACCCATGGCTCCCACGCTGTGAGCTTCATCCAAATACA
AGTATGCTTTGTATTTCTTTTTCAGAGCAATAACCTCGGGCAAACGGACT
ATGGACCCCTCCATGCTGAAGATGCCCTCGACCAAGATCATAACCTTGTC
CCATGGCTGACCACCTTTTTTGGGATTTCCATAGCACACACCCTGACGGA
GGACGCGCTCCAGATCGCGCATGTTGTTGTGCTTAAAGACCTTGGTGGTG
GCCCCGGACCAACGCAGTCCCAAAATGATGGAGGCGTGATTCTTTTCGTC
ACTAATCACAAGA
BO10451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4162-PA | 1794 | lace-RA | 897..1791 | 913..19 | 4450 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lace-RB | 2564 | CG4162-RB | 991..1885 | 913..19 | 4460 | 99.9 | Minus |
| lace-RA | 2991 | CG4162-RA | 991..1885 | 913..19 | 4460 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15502809..15503226 | 913..496 | 2075 | 99.8 | Minus |
| 2L | 23513712 | 2L | 15503289..15503553 | 497..233 | 1325 | 100 | Minus |
| 2L | 23513712 | 2L | 15503698..15503912 | 233..19 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:35:49 has no hits.
BO10451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:20 Download gff for
BO10451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4162-PA | 898..1794 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:29 Download gff for
BO10451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4162-PA | 898..1794 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:37:49 Download gff for
BO10451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lace-RA | 992..1885 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:38 Download gff for
BO10451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lace-RA | 992..1885 | 19..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:38 Download gff for
BO10451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15502810..15503226 | 496..912 | 99 | -> | Minus |
| 2L | 15503291..15503553 | 233..495 | 100 | -> | Minus |
| 2L | 15503699..15503912 | 19..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:37:49 Download gff for
BO10451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15502810..15503226 | 496..912 | 99 | -> | Minus |
| arm_2L | 15503291..15503553 | 233..495 | 100 | -> | Minus |
| arm_2L | 15503699..15503912 | 19..232 | 100 | | Minus |
BO10451.5prime Sequence
906 bp (820 high quality bases) assembled on 2006-04-19
> BO10451.5prime
GAAGTTATCAGTCGACATGGGCAATTTCGACGGCGATTCTGGAACGGTTT
TCGAGCAGAGCTATGCGACGACCAACGGAAACGGAAAGGTGCCGAATGGC
AATGGGGCGGCAGATCTCAGTGCCCCGGAAAAACAGGAACTTCTCCGGAA
GTTCTCGGCACCCGCGTACACTGAAATTCGCACGCGACGCTGCCAGCCGA
AGCCCGCAAACGACGCCCAGAGTCCCAGCTCGATCAACTACCATCCGGAA
AAGAAGTCGATCCCCAATGGGCATGCCTCCATTCTGGATCAGGAGTCCAA
GCCCAACCAGGCAGAGGGCAAACTTTCGCCGGAGCTGGAGCACTTCCAGA
AAACCTCCTTTGAGGAGGTGCCTTTGCACACGGCCTGCCTTACGTATTTG
GGATTCTATCTACTGATGATCCTGGGCTACATCAACCAGTTGCTCTTCGT
GCCCAAAGTGGCCACCGAGAAGGGTCGGGATGGCTATGTAGCCCTCTACG
ATGCCTTCGAAAGCTTCTACTCGAGGTACGTTTACAGGAGAATCAAGGAT
TGCTGGAACCGACCCATCTGCAGTGTTCCGGGAGACGAACTCACTCTAAA
GGATCGCGTAACCGATGATTATGGATGGAGTTTCAAGTTCACTGGAACGG
AGACACGTTGCTTAAATCTGGGATCCTACAATTACCTGGGATTTGCCGCC
GCTACTGGACAGTGTGCTGATGATTCAGAGGAAAGTGCTCGGAGCTCTGG
ACTGGCATACTGCAGCTCCCGTTGTGAGCTTGGTGACAACGAGCAGCTGC
AAGAGCTGGAGGCTCTAACTGCCAGATACTTTGGCGTGGAGGATGCCATT
GTCTTTGGAATGGGTTTCGCCACAAATGCGTTTGAACCTTCCCTCACTGC
TGGGGA
BO10451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4162-PA | 1794 | lace-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lace-RB | 2564 | CG4162-RB | 95..981 | 17..904 | 4415 | 99.9 | Plus |
| lace-RA | 2991 | CG4162-RA | 95..981 | 17..904 | 4415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15502114..15502799 | 218..904 | 3385 | 99.9 | Plus |
| 2L | 23513712 | 2L | 15499221..15499424 | 17..220 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:29:29 has no hits.
BO10451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:21 Download gff for
BO10451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4162-PA | 1..887 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:30 Download gff for
BO10451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4162-PA | 1..887 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:07 Download gff for
BO10451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lace-RA | 95..981 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:00:28 Download gff for
BO10451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lace-RA | 95..981 | 17..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:00:28 Download gff for
BO10451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15499221..15499424 | 17..220 | 100 | -> | Plus |
| 2L | 15502117..15502799 | 221..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:07 Download gff for
BO10451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15499221..15499424 | 17..220 | 100 | -> | Plus |
| arm_2L | 15502117..15502799 | 221..905 | 99 | | Plus |
BO10451.complete Sequence
1825 bp (1825 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631765
> BO10451.complete
GAAGTTATCAGTCGACATGGGCAATTTCGACGGCGATTCTGGAACGGTTT
TCGAGCAGAGCTATGCGACGACCAACGGAAACGGAAAGGTGCCGAATGGC
AATGGGGCGGCAGATCTCAGTGCCCCGGAAAAACAGGAACTTCTCCGGAA
GTTCTCGGCACCCGCGTACACTGAAATTCGCACGCGACGCTGCCAGCCGA
AGCCCGCAAACGACGCCCAGAGTCCCAGCTCGATCAACTACCATCCGGAA
AAGAAGTCGATCCCCAATGGGCATGCCTCCATTCTGGATCAGGAGTCCAA
GCCCAACCAGGCAGAGGGCAAACTTTCGCCGGAGCTGGAGCACTTCCAGA
AAACCTCCTTTGAGGAGGTGCCTTTGCACACGGCCTGCCTTACGTATTTG
GGATTCTATCTACTGATGATCCTGGGCTACATCAACCAGTTGCTCTTCGT
GCCCAAAGTGGCCACCGAGAAGGGTCGGGATGGCTATGTAGCCCTCTACG
ATGCCTTCGAAAGCTTCTACTCGAGGTACGTTTACAGGAGAATCAAGGAT
TGCTGGAACCGACCCATCTGCAGTGTTCCGGGAGACGAACTCACTCTAAA
GGATCGCGTAACCGATGATTATGGATGGAGTTTCAAGTTCACTGGAACGG
AGACACGTTGCTTAAATCTGGGATCCTACAATTACCTGGGATTTGCCGCC
GCTACTGGACAGTGTGCTGATGATTCAGAGGAAAGTGCTCGGAGCTCTGG
ACTGGCATACTGCAGCTCCCGTTGTGAGCTTGGTGACAACGAGCAGCTGC
AAGAGCTGGAGGCTCTAACTGCCAGATACTTTGGCGTGGAGGATGCCATT
GTCTTTGGAATGGGTTTCGCCACAAATGCGTTGAACCTTCCCTCACTGCT
GGGACCCAACAGTCTTGTGATTAGTGACGAAAAGAATCACGCCTCCATCA
TTTTGGGACTGCGTTTGTCCGGGGCCACCACCAAGGTCTTTAAGCACAAC
AACATGCGCGATCTGGAGCGCGTCCTCCGTCAGGGTGTGTGCTATGGAAA
TCCCAAAAAAGGTGGTCAGCCATGGGACAAGGTTATGATCTTGGTCGAGG
GCATCTTCAGCATGGAGGGGTCCATAGTCCGTTTGCCCGAGGTTATTGCT
CTGAAAAAGAAATACAAAGCATACTTGTATTTGGATGAAGCTCACAGCGT
GGGAGCCATGGGTTCCCGTGGACGAGGAGTTACAGATTATTTTAATGTGG
ATCCGAAGGAGGTGGACATTCTGATGGGCACCTTCACCAAAAGTTTTGGC
AGTGCTGGAGGCTATCTCGCTGGATCCAAGAAACTGATTGACTTTCTCCG
CACCAACAGCCACGCCCATTGTTATGCTGCTTCGATCTCGCCACCCATCG
CACAGCAAATCCTTACCTCCATGAAGACCATTATGGGTGAAGATGGCACT
GACATTGGACGCAAGAAGATCCACCAGCTGGCCAGGAACACACGTTACTT
CCGCCGACGTCTGGCTCAGCTGGGAGTGATCACATACGGTCACGAGGACT
CCCCAGTCGTGCCCATGCTGGTGTACCTGTTTTCCAAGATTGGCGCTGTG
GTTCGCACCTTGACGACTCGCCACATTGCCGCGGTGGGAGCTGGATTCCC
GGCCACACCCATCATGGAAGGACGCATCCGATTCTGCCTTTCAGCCGCCC
ACACCAAGGAGCAGCTGGACTTTGCCCTGGAGGCGATAGACGAGATTGCC
GATGATCTGGGCCTAAAGTATTCTCGCAAGCCACGCGATCCGAATCCCGT
CATTTACGCAAGCTTTCTAGACCAT
BO10451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lace-RB | 1794 | CG4162-PB | 1..1791 | 17..1807 | 8955 | 100 | Plus |
| lace-RA | 1794 | CG4162-PA | 1..1791 | 17..1807 | 8955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lace-RB | 2564 | CG4162-RB | 95..1885 | 17..1807 | 8955 | 100 | Plus |
| lace-RA | 2991 | CG4162-RA | 95..1885 | 17..1807 | 8955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15502114..15503226 | 218..1330 | 5565 | 100 | Plus |
| 2L | 23513712 | 2L | 15503289..15503553 | 1329..1593 | 1325 | 100 | Plus |
| 2L | 23513712 | 2L | 15503698..15503912 | 1593..1807 | 1075 | 100 | Plus |
| 2L | 23513712 | 2L | 15499221..15499424 | 17..220 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:42:47 has no hits.
BO10451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:46 Download gff for
BO10451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lace-RA | 1..1794 | 17..1808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:13 Download gff for
BO10451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lace-RA | 112..1902 | 17..1807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:52 Download gff for
BO10451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lace-RA | 95..1885 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:46 Download gff for
BO10451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lace-RA | 112..1902 | 17..1807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:12 Download gff for
BO10451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lace-RA | 95..1885 | 17..1809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:12 Download gff for
BO10451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15499221..15499424 | 17..220 | 100 | -> | Plus |
| 2L | 15502117..15503226 | 221..1330 | 100 | -> | Plus |
| 2L | 15503291..15503553 | 1331..1593 | 100 | -> | Plus |
| 2L | 15503699..15503912 | 1594..1809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:52 Download gff for
BO10451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15499221..15499424 | 17..220 | 100 | -> | Plus |
| arm_2L | 15502117..15503226 | 221..1330 | 100 | -> | Plus |
| arm_2L | 15503291..15503553 | 1331..1593 | 100 | -> | Plus |
| arm_2L | 15503699..15503912 | 1594..1809 | 99 | | Plus |
BO10451.pep Sequence
Translation from 16 to 1825
> BO10451.pep
MGNFDGDSGTVFEQSYATTNGNGKVPNGNGAADLSAPEKQELLRKFSAPA
YTEIRTRRCQPKPANDAQSPSSINYHPEKKSIPNGHASILDQESKPNQAE
GKLSPELEHFQKTSFEEVPLHTACLTYLGFYLLMILGYINQLLFVPKVAT
EKGRDGYVALYDAFESFYSRYVYRRIKDCWNRPICSVPGDELTLKDRVTD
DYGWSFKFTGTETRCLNLGSYNYLGFAAATGQCADDSEESARSSGLAYCS
SRCELGDNEQLQELEALTARYFGVEDAIVFGMGFATNALNLPSLLGPNSL
VISDEKNHASIILGLRLSGATTKVFKHNNMRDLERVLRQGVCYGNPKKGG
QPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLDEAHSVGAMGS
RGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHA
HCYAASISPPIAQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLA
QLGVITYGHEDSPVVPMLVYLFSKIGAVVRTLTTRHIAAVGAGFPATPIM
EGRIRFCLSAAHTKEQLDFALEAIDEIADDLGLKYSRKPRDPNPVIYASF
LDH
BO10451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lace-PB | 597 | CG4162-PB | 1..597 | 1..597 | 3124 | 100 | Plus |
| lace-PA | 597 | CG4162-PA | 1..597 | 1..597 | 3124 | 100 | Plus |
| CG10361-PA | 417 | CG10361-PA | 49..413 | 198..581 | 451 | 30.4 | Plus |
| Spt-I-PC | 468 | CG4016-PC | 96..467 | 215..581 | 408 | 29.6 | Plus |
| Spt-I-PA | 468 | CG4016-PA | 96..467 | 215..581 | 408 | 29.6 | Plus |
