Clone Sequence Records
BO10452.3prime Sequence
917 bp (875 high quality bases) assembled on 2006-04-19
> BO10452.3prime
ATGGTCTAGAAAGCTTGCCGTGATAACCGTTGGAGCGTTGCGTCCAGTGA
ACTTGGGCAGCTGAGAGATCTCCAGGGCGATGTCGATCAAGGGTTTCAGC
ATCACGCTGGCCTGGCCCAAAACATTCTCCTTCTCATAGGAATCAATGTA
CAAGCGAACGGTTGCTCCCGAGCTTCCAGTTCCACTGAGGCGCACCACAA
TGCGGCTGCCATCCTCGAACACAATGCGCAGACCCTGTTTCGTGGCCACC
GACTTGTCGACAGGATCTGTGTAGCTGAAGTTGTCGGCCTCCTTGACCTT
GTAGGTTTTTCCGCCGCTGGAATAGCTCTTGCCGACGAACTCCGGAGCAG
TTATGGTCTTCTCCATGGTGGCCACCATCTCGTTGCAAGGATCGGAAGCG
CACTCCTCATAATCGTAGCGGGTGAAATAGTTGCGTCCATACACAGACCA
GTGCTGCTTCAGGATGTCTTCGATGCCTTTACCCGTGTGCTGCATCACGG
AGATCCAAGCGAGAACCGCCCAGATGCCATCCTTTTCGCGGATGTGATTG
GAGCCAGTTCCGAAGCTCTCCTCTCCGCACAGACACAACCTTCCGGCGTC
CATGAGATTACCGAAGTACTTCCATCCAGTGGGAACCTCAAACACTTCCT
TGCCCAACTTTCTGCCCACCAAATCCACAGCGGATGCAGTTGGCATACTG
CGGGCGAATCCTTGAACACCATTCTTTTGGAAGTACGGTATGGCCTCCAG
GTAGTGGGCAATTACCGCCAGCGAGTCGCTGGGAGTTACGAAGAACGCCT
TGCTGCCAATGATCATGTTGCGGTCACCATCTCCATCGAAGGCAGCTCCA
ATGTCATAGTCTCCCTGGGCGACAGTGTCAACCAGGTTCTTGGCGTATGT
GAGATTTGGGTCAGGAT
BO10452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5165-PA | 1683 | Pgm-RA | 782..1680 | 917..19 | 4470 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1843 | CG5165-RA | 823..1721 | 917..19 | 4480 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16126342..16127104 | 155..917 | 3800 | 99.9 | Plus |
| 3L | 28110227 | 3L | 16126140..16126276 | 19..155 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:51:45 has no hits.
BO10452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:22 Download gff for
BO10452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-PA | 782..1683 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:31 Download gff for
BO10452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5165-PA | 782..1683 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:45:12 Download gff for
BO10452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 823..1731 | 9..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:01 Download gff for
BO10452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 823..1731 | 9..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:01 Download gff for
BO10452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16126130..16126275 | 9..154 | 97 | <- | Plus |
| 3L | 16126342..16127104 | 155..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:45:12 Download gff for
BO10452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16119230..16119375 | 9..154 | 97 | <- | Plus |
| arm_3L | 16119442..16120204 | 155..917 | 99 | | Plus |
BO10452.5prime Sequence
924 bp (829 high quality bases) assembled on 2006-04-19
> BO10452.5prime
GAAGTTATCAGTCGACATGTCGCTAACGGTGGAAATTGTTGCCACAAAGC
CCTATGAGGGTCAGAAGCCAGGAACCAGTGGATTGCGCAAAAAGGTTAAG
GTTTTCACCCAGCCCAACTACACGGAGAACTTTGTCCAGGCCATCTTGGA
GGCAAATGGAGCTGCTCTGGCTGGTTCCACCCTTGTAGTTGGTGGAGATG
GACGTTTCTACTGCAAGGAGGCTGCCGAGCTAATTGTGCGGCTATCCGCT
GCCAATGGCGTCTCCAAGTTGCTGGTGGGTCAAAACGGCATCCTGTCCAC
CCCTGCCGTATCCAGCCTGATCCGTCACAACAAGGCTTTGGGCGGCATTG
TTTTGACTGCATCCCACAATCCCGGTGGTCCAGAGAATGATTTCGGCATC
AAGTTCAACTGCGAGAACGGAGGACCTGCCCCGGATGCGTTCACCAACCA
CATCTACAAGATCACCACCGAGATCAAGGAGTACAAGCTGGTGCGCAACC
TGCAGATCGACATCTCAAAGGTTGGTGTAACCTCGTTCGACATCGCCGGA
AAGCCCTTTACCGTGGAGGTGATCGATTCGGTGGCCAACTATGTGCGCCA
CATGGAGGAAATCTTCGACTTCGCCAAGCTGAAGGACTTCGTAAGTGGCA
AAGCCACTGGAAAGCCTCTGAAGATGCGCATCGATGCAATGAACGGAGTA
ACTGGCTCATATGTGCGCGAGATCTTCCTGAACCGGTTGGGTGCCACCGA
ATCATCGGTGGTCCACACCACTCCACTGCCCGACTTTGGTGGTCTGCATC
CTGACCCAAATCTCACATACGCCAAGGACCTGGTTGACACTGTCGCCCAG
GGAGACTATGACATTGGAGCTGCCTTCGATGGAGATGGTGACCGCAACAT
GATCATTGGCAGCAAGCCGTTCTT
BO10452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5165-PA | 1683 | Pgm-RA | 1..908 | 17..924 | 4515 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1843 | CG5165-RA | 39..949 | 14..924 | 4540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16126978..16127561 | 924..341 | 2905 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16128094..16128343 | 342..93 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 16128411..16128493 | 96..14 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:41:17 has no hits.
BO10452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:23 Download gff for
BO10452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:33 Download gff for
BO10452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5165-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:25:15 Download gff for
BO10452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 29..949 | 2..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:12:05 Download gff for
BO10452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 29..949 | 2..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:12:05 Download gff for
BO10452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16126978..16127560 | 342..924 | 99 | <- | Minus |
| 3L | 16128095..16128341 | 95..341 | 100 | <- | Minus |
| 3L | 16128413..16128502 | 2..94 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:25:15 Download gff for
BO10452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16120078..16120660 | 342..924 | 99 | <- | Minus |
| arm_3L | 16121195..16121441 | 95..341 | 100 | <- | Minus |
| arm_3L | 16121513..16121602 | 2..94 | 94 | | Minus |
BO10452.complete Sequence
1714 bp (1714 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631766
> BO10452.complete
GAAGTTATCAGTCGACATGTCGCTAACGGTGGAAATTGTTGCCACAAAGC
CCTATGAGGGTCAGAAGCCAGGAACCAGTGGATTGCGCAAAAAGGTTAAG
GTTTTCACCCAGCCCAACTACACGGAGAACTTTGTCCAGGCCATCTTGGA
GGCAAATGGAGCTGCTCTGGCTGGTTCCACCCTTGTAGTTGGTGGAGATG
GACGTTTCTACTGCAAGGAGGCTGCCGAGCTAATTGTGCGGCTATCCGCT
GCCAATGGCGTCTCCAAGTTGCTGGTGGGTCAAAACGGCATCCTGTCCAC
CCCTGCCGTATCCAGCCTGATCCGTCACAACAAGGCTTTGGGCGGCATTG
TTTTGACTGCATCCCACAATCCCGGTGGTCCAGAGAATGATTTCGGCATC
AAGTTCAACTGCGAGAACGGAGGACCTGCCCCGGATGCGTTCACCAACCA
CATCTACAAGATCACCACCGAGATCAAGGAGTACAAGCTGGTGCGCAACC
TGCAGATCGACATCTCAAAGGTTGGTGTAACCTCGTTCGACATCGCCGGA
AAGCCCTTTACCGTGGAGGTGATCGATTCGGTGGCCAACTATGTGCGCCA
CATGGAGGAAATCTTCGACTTCGCCAAGCTGAAGGACTTCGTAAGTGGCA
AAGCCACTGGAAAGCCTCTGAAGATGCGCATCGATGCAATGAACGGAGTA
ACTGGCTCATATGTGCGCGAGATCTTCCTGAACCGGTTGGGTGCCACCGA
ATCATCGGTGGTCCACACCACTCCACTGCCCGACTTTGGTGGTCTGCATC
CTGACCCAAATCTCACATACGCCAAGGACCTGGTTGACACTGTCGCCCAG
GGAGACTATGACATTGGAGCTGCCTTCGATGGAGATGGTGACCGCAACAT
GATCATTGGCAGCAAGGCGTTCTTCGTAACTCCCAGCGACTCGCTGGCGG
TAATTGCCCACTACCTGGAGGCCATACCGTACTTCCAAAAGAATGGTGTT
CAAGGATTCGCCCGCAGTATGCCAACTGCATCCGCTGTGGATTTGGTGGG
CAGAAAGTTGGGCAAGGAAGTGTTTGAGGTTCCCACTGGATGGAAGTACT
TCGGTAATCTCATGGACGCCGGAAGGTTGTGTCTGTGCGGAGAGGAGAGC
TTCGGAACTGGCTCCAATCACATCCGCGAAAAGGATGGCATCTGGGCGGT
TCTCGCTTGGATCTCCGTGATGCAGCACACGGGTAAAGGCATCGAAGACA
TCCTGAAGCAGCACTGGTCTGTGTATGGACGCAACTATTTCACCCGCTAC
GATTATGAGGAGTGCGCTTCCGATCCTTGCAACGAGATGGTGGCCACCAT
GGAGAAGACCATAACTGCTCCGGAGTTCGTCGGCAAGAGCTATTCCAGCG
GCGGAAAAACCTACAAGGTCAAGGAGGCCGACAACTTCAGCTACACAGAT
CCTGTCGACAAGTCGGTGGCCACGAAACAGGGTCTGCGCATTGTGTTCGA
GGATGGCAGCCGCATTGTGGTGCGCCTCAGTGGAACTGGAAGCTCGGGAG
CAACCGTTCGCTTGTACATTGATTCCTATGAGAAGGAGAATGTTTTGGGC
CAGGCCAGCGTGATGCTGAAACCCTTGATCGACATCGCCCTGGAGATCTC
TCAGCTGCCCAAGTTCACTGGACGCAACGCTCCAACGGTTATCACGGCAA
GCTTTCTAGACCAT
BO10452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1683 | CG5165-PA | 1..1680 | 17..1696 | 8400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1843 | CG5165-RA | 39..1721 | 14..1696 | 8415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16126342..16127561 | 1560..341 | 6100 | 100 | Minus |
| 3L | 28110227 | 3L | 16128094..16128343 | 342..93 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 16126140..16126276 | 1696..1560 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 16128411..16128493 | 96..14 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:45:06 has no hits.
BO10452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:42 Download gff for
BO10452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 1..1683 | 17..1700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:17 Download gff for
BO10452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 94..1796 | 2..1706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:49 Download gff for
BO10452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 42..1721 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:42 Download gff for
BO10452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 94..1796 | 2..1706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:18 Download gff for
BO10452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 42..1721 | 17..1698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:18 Download gff for
BO10452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16126138..16126275 | 1561..1698 | 98 | <- | Minus |
| 3L | 16126342..16127560 | 342..1560 | 100 | <- | Minus |
| 3L | 16128095..16128341 | 95..341 | 100 | <- | Minus |
| 3L | 16128413..16128490 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:49 Download gff for
BO10452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16119238..16119375 | 1561..1698 | 98 | <- | Minus |
| arm_3L | 16119442..16120660 | 342..1560 | 100 | <- | Minus |
| arm_3L | 16121195..16121441 | 95..341 | 100 | <- | Minus |
| arm_3L | 16121513..16121590 | 17..94 | 100 | | Minus |
BO10452.pep Sequence
Translation from 16 to 1714
> BO10452.pep
MSLTVEIVATKPYEGQKPGTSGLRKKVKVFTQPNYTENFVQAILEANGAA
LAGSTLVVGGDGRFYCKEAAELIVRLSAANGVSKLLVGQNGILSTPAVSS
LIRHNKALGGIVLTASHNPGGPENDFGIKFNCENGGPAPDAFTNHIYKIT
TEIKEYKLVRNLQIDISKVGVTSFDIAGKPFTVEVIDSVANYVRHMEEIF
DFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIFLNRLGATESSVVH
TTPLPDFGGLHPDPNLTYAKDLVDTVAQGDYDIGAAFDGDGDRNMIIGSK
AFFVTPSDSLAVIAHYLEAIPYFQKNGVQGFARSMPTASAVDLVGRKLGK
EVFEVPTGWKYFGNLMDAGRLCLCGEESFGTGSNHIREKDGIWAVLAWIS
VMQHTGKGIEDILKQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTIT
APEFVGKSYSSGGKTYKVKEADNFSYTDPVDKSVATKQGLRIVFEDGSRI
VVRLSGTGSSGATVRLYIDSYEKENVLGQASVMLKPLIDIALEISQLPKF
TGRNAPTVITASFLDH
BO10452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-PA | 560 | CG5165-PA | 1..560 | 1..560 | 2901 | 100 | Plus |
