Clone BO10453 Report

Search the DGRC for BO10453

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptGint3-RB
Protein status:BO10453.pep: validated full length
Sequenced Size:1357

Clone Sequence Records

BO10453.3prime Sequence

862 bp (822 high quality bases) assembled on 2006-04-19

> BO10453.3prime
ATGGTCTAGAAAGCTTGCCATAGCCTGCACCAGCATTAGAAGGTCTTCCT
TTAAGTAGTTTATATCCGTTTGCAAAGGAGCGGGTGTATCATTGGCGCTA
AACAGCAGCAGAGTGTTCGGAATGAGTTTGCAGTCATATAGTGTCTTTTC
CAAGTCCTCATCGCCCAGTTTGCCATCGCTGTTGGACACCAAGCTAAAAT
CCAGGCTTTCGTCCGCCAGGCAAGATTGGACAAACTCGAACACATCGGAT
ATTTTTTCGTACACATTGAAAGTGCCTTGTATAAAGAGTCCATTGGGAAA
TTTAACCCTGACTAAAGCGTATCGATACATGCGCAAATTGCGCTGCTCCT
CGCGTTCCCGCATCGCCTTTGTCCGCAGCATCTGTGACTGGGCAATGGCC
TCGGATCGCAGCTGTTGCTCTTTCTTGATCTCCTCCGGCGACAGGCGATA
AAACTCGTCGGGGAGGGCGACACGACATGCCTGCGATGGAAGTAGGACCT
TAATGTTGCGATCCAGCTCCAGGGGAATAATCTCCGAGCTCTTGAGAGCT
TCCACTAGTGTGGGCAAGTCGAGATCCTTCTCCGTCTGCTCCTTGGTCCA
CAAAAGGAAGGGTTCGCCATCGATCTGGACCTCGTTGAAGCCCGCTGCTT
GCAGAACATCCAGGGCACCCTCCACGTAGCGCACCTTTTCGCTGAAGATT
TTGTTGGACATCCGTATCTTGCAGAACTTCTCCTCCTCGGGATTCTTGAT
AAGATTCTCCAGATATCGGATTAGCGTGGCAATGCACTCGTCGGCCTTCT
CCTTACATTGCAATTGTGGATGATCAGGCAGGCGGTGAGGCCGCGATCTG
CCTCCAGCTGCT

BO10453.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5469-PD 1326 Gint3-RD 537..1323 805..19 3935 100 Minus
CG5469-PB 1326 Gint3-RB 537..1323 805..19 3935 100 Minus
CG5469-PC 1326 Gint3-RC 537..1323 805..19 3935 100 Minus
CG5469-PD 1326 Gint3-RD 479..536 862..805 290 100 Minus
CG5469-PB 1326 Gint3-RB 479..536 862..805 290 100 Minus
CG5469-PC 1326 Gint3-RC 479..536 862..805 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG42306-RB 2048 CG42306-RB 1082..1926 862..19 4200 99.9 Minus
CG42306-RA 2399 CG42306-RA 1433..2277 862..19 4200 99.9 Minus
CG42306-RC 1950 CG42306-RC 984..1828 862..19 4200 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18658919..18659506 276..862 2890 99.8 Plus
2R 25286936 2R 18658708..18658856 128..276 745 100 Plus
2R 25286936 2R 18658540..18658648 19..127 545 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:24:19 has no hits.

BO10453.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:24 Download gff for BO10453.3prime
Subject Subject Range Query Range Percent Splice Strand
Gint3-PB 479..1326 18..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:34 Download gff for BO10453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5469-PC 479..1326 18..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:46:08 Download gff for BO10453.3prime
Subject Subject Range Query Range Percent Splice Strand
Gint3-RB 1082..1926 19..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:01 Download gff for BO10453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42306-RC 984..1828 19..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:01 Download gff for BO10453.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18658540..18658648 19..127 100 <- Plus
2R 18658708..18658856 128..276 100 <- Plus
2R 18658920..18659506 277..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:46:08 Download gff for BO10453.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14546045..14546153 19..127 100 <- Plus
arm_2R 14546213..14546361 128..276 100 <- Plus
arm_2R 14546425..14547011 277..862 99   Plus

BO10453.5prime Sequence

877 bp (769 high quality bases) assembled on 2006-04-19

> BO10453.5prime
GAAGTTATCAGTCGACATGTCCAAGATTAAGAAGTTCTTTTCGCGGAAGA
AGGCGGAGGCTGCCTTTAAGCTCAATTTAACTGGCAGCGGCATGGGCACT
GGCCACAAGCTGAATTCCCCCAAACAGGAGACTCCTTCAAGTAGTTCCCG
CCAAAAGTATGAGGCCTATGTGCCACCAAAGCGAAATGAAATAAGTAACG
AGGCCAGGGCAGCTGCCAGTGCGGCACTGGCGCGCATTGACAAGAAAACA
TCCAGGGAATTCAATACCTCGCTGTCGGCAGTGAAGGCACAGGCTAAAAG
AGAGCTGGAGGCAGAGCGTCGCCAGAGAGAGGAAGCCATGGGCACGCCAT
CAACGACCAGCACATCCACATCGGCTTCCGGCGGCGACACTCGCAACCTG
GCCTGCGAAGGCGTCTTCTTCCGCTGCCCCCTAATCAGCGAGGAGATTCT
ACCCAAGAGCGTGTGGAAGGTTCGCATCAAAGAGTTCCTCTACCAGCAGC
TGGAGGCAGATCGCGGCCTCACCGCCTGCCTGATCATCCACAATTGCAAT
GTTAAGGAGAAGGCCGACGAGTGCATTGCCACGCTAATCCGATATCTGGA
GAATCTTATCAAGAATCCCGAGGAGGAGAAGTTCTGCAAGATACGGATGT
CCAACAAAATCTTCAGCGAAAAGGTGCGCTACGTGGAGGGTGCCCTGGAT
GTTCTGCAAGCAGCGGGCTTCAACGAGGTCCAGATCGATGGCGAACCCTT
CCTTTTGTGGACCAAGGAGCAGACGGAGAAGGATCTCGACTTGCCCACAC
TAGTGGAAGCTCTCAAGAGCTCGGAGATTATTCCCCTGGAGCTGGATCGC
AACATTAAGGTCCTACTTCCATCGCAG

BO10453.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5469-PD 1326 Gint3-RD 1..861 17..877 4305 100 Plus
CG5469-PB 1326 Gint3-RB 1..861 17..877 4305 100 Plus
CG5469-PC 1326 Gint3-RC 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG42306-RB 2048 CG42306-RB 603..1464 16..877 4310 100 Plus
CG42306-RA 2399 CG42306-RA 954..1815 16..877 4310 100 Plus
CG42306-RC 1950 CG42306-RC 505..1366 16..877 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18659124..18659932 877..69 4045 100 Minus
2R 25286936 2R 18659986..18660040 70..16 275 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:09:56 has no hits.

BO10453.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:25 Download gff for BO10453.5prime
Subject Subject Range Query Range Percent Splice Strand
Gint3-PB 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:35 Download gff for BO10453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5469-PC 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:03 Download gff for BO10453.5prime
Subject Subject Range Query Range Percent Splice Strand
Gint3-RB 603..1464 16..877 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:16 Download gff for BO10453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42306-RC 505..1366 16..877 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:16 Download gff for BO10453.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18659124..18659930 71..877 100 <- Minus
2R 18659986..18660040 16..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:03 Download gff for BO10453.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14546629..14547435 71..877 100 <- Minus
arm_2R 14547491..14547545 16..70 100   Minus

BO10453.complete Sequence

1357 bp (1357 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631767

> BO10453.complete
GAAGTTATCAGTCGACATGTCCAAGATTAAGAAGTTCTTTTCGCGGAAGA
AGGCGGAGGCTGCCTTTAAGCTCAATTTAACTGGCAGCGGCATGGGCACT
GGCCACAAGCTGAATTCCCCCAAACAGGAGACTCCTTCAAGTAGTTCCCG
CCAAAAGTATGAGGCCTATGTGCCACCAAAGCGAAATGAAATAAGTAACG
AGGCCAGGGCAGCTGCCAGTGCGGCACTGGCGCGCATTGACAAGAAAACA
TCCAGGGAATTCAATACCTCGCTGTCGGCAGTGAAGGCACAGGCTAAAAG
AGAGCTGGAGGCAGAGCGTCGCCAGAGAGAGGAAGCCATGGGCACGCCAT
CAACGACCAGCACATCCACATCGGCTTCCGGCGGCGACACTCGCAACCTG
GCCTGCGAAGGCGTCTTCTTCCGCTGCCCCCTAATCAGCGAGGAGATTCT
ACCCAAGAGCGTGTGGAAGGTTCGCATCAAAGAGTTCCTCTACCAGCAGC
TGGAGGCAGATCGCGGCCTCACCGCCTGCCTGATCATCCACAATTGCAAT
GTTAAGGAGAAGGCCGACGAGTGCATTGCCACGCTAATCCGATATCTGGA
GAATCTTATCAAGAATCCCGAGGAGGAGAAGTTCTGCAAGATACGGATGT
CCAACAAAATCTTCAGCGAAAAGGTGCGCTACGTGGAGGGTGCCCTGGAT
GTTCTGCAAGCAGCGGGCTTCAACGAGGTCCAGATCGATGGCGAACCCTT
CCTTTTGTGGACCAAGGAGCAGACGGAGAAGGATCTCGACTTGCCCACAC
TAGTGGAAGCTCTCAAGAGCTCGGAGATTATTCCCCTGGAGCTGGATCGC
AACATTAAGGTCCTACTTCCATCGCAGGCATGTCGTGTCGCCCTCCCCGA
CGAGTTTTATCGCCTGTCGCCGGAGGAGATCAAGAAAGAGCAACAGCTGC
GATCCGAGGCCATTGCCCAGTCACAGATGCTGCGGACAAAGGCGATGCGG
GAACGCGAGGAGCAGCGCAATTTGCGCATGTATCGATACGCTTTAGTCAG
GGTTAAATTTCCCAATGGACTCTTTATACAAGGCACTTTCAATGTGTACG
AAAAAATATCCGATGTGTTCGAGTTTGTCCAATCTTGCCTGGCGGACGAA
AGCCTGGATTTTAGCTTGGTGTCCAACAGCGATGGCAAACTGGGCGATGA
GGACTTGGAAAAGACACTATATGACTGCAAACTCATTCCGAACACTCTGC
TGCTGTTTAGCGCCAATGATACACCCGCTCCTTTGCAAACGGATATAAAC
TACTTAAAGGAAGACCTTCTAATGCTGGTGCAGGCTATGGCAAGCTTTCT
AGACCAT

BO10453.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Gint3-RE 1326 CG5469-PE 1..1323 17..1339 6615 100 Plus
Gint3-RB 1326 CG5469-PB 1..1323 17..1339 6615 100 Plus
Gint3-RD 1326 CG5469-PD 1..1323 17..1339 6615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG42306-RB 2048 CG42306-RB 603..1926 16..1339 6620 100 Plus
CG42306-RA 2399 CG42306-RA 954..2277 16..1339 6620 100 Plus
CG42306-RC 1950 CG42306-RC 505..1828 16..1339 6620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18658919..18659932 1082..69 5070 100 Minus
2R 25286936 2R 18658708..18658856 1230..1082 745 100 Minus
2R 25286936 2R 18658540..18658648 1339..1231 545 100 Minus
2R 25286936 2R 18659986..18660040 70..16 275 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:31:53 has no hits.

BO10453.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:32 Download gff for BO10453.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RC 1..1326 17..1340 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:04 Download gff for BO10453.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RC 165..1488 16..1339 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:45 Download gff for BO10453.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RB 604..1926 17..1341 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:33 Download gff for BO10453.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RC 165..1488 16..1339 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:19 Download gff for BO10453.complete
Subject Subject Range Query Range Percent Splice Strand
CG42306-RC 506..1828 17..1341 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:19 Download gff for BO10453.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18658538..18658648 1231..1341 98 <- Minus
2R 18658708..18658856 1082..1230 100 <- Minus
2R 18658920..18659930 71..1081 100 <- Minus
2R 18659986..18660039 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:45 Download gff for BO10453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14546043..14546153 1231..1341 98 <- Minus
arm_2R 14546213..14546361 1082..1230 100 <- Minus
arm_2R 14546425..14547435 71..1081 100 <- Minus
arm_2R 14547491..14547544 17..70 100   Minus

BO10453.pep Sequence

Translation from 16 to 1357

> BO10453.pep
MSKIKKFFSRKKAEAAFKLNLTGSGMGTGHKLNSPKQETPSSSSRQKYEA
YVPPKRNEISNEARAAASAALARIDKKTSREFNTSLSAVKAQAKRELEAE
RRQREEAMGTPSTTSTSTSASGGDTRNLACEGVFFRCPLISEEILPKSVW
KVRIKEFLYQQLEADRGLTACLIIHNCNVKEKADECIATLIRYLENLIKN
PEEEKFCKIRMSNKIFSEKVRYVEGALDVLQAAGFNEVQIDGEPFLLWTK
EQTEKDLDLPTLVEALKSSEIIPLELDRNIKVLLPSQACRVALPDEFYRL
SPEEIKKEQQLRSEAIAQSQMLRTKAMREREEQRNLRMYRYALVRVKFPN
GLFIQGTFNVYEKISDVFEFVQSCLADESLDFSLVSNSDGKLGDEDLEKT
LYDCKLIPNTLLLFSANDTPAPLQTDINYLKEDLLMLVQAMASFLDH

BO10453.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Gint3-PE 441 CG5469-PE 1..441 1..441 2228 100 Plus
Gint3-PB 441 CG5469-PB 1..441 1..441 2228 100 Plus
Gint3-PD 441 CG5469-PD 1..441 1..441 2228 100 Plus