Clone Sequence Records
BO10454.3prime Sequence
889 bp (808 high quality bases) assembled on 2006-04-19
> BO10454.3prime
ATGGTCTAGAAAGCTTGCTTTGGCTGCCGGCTTATCAGCCGGCGCCCTCT
CGGCAAGTCTTAGCCTCTGCTGTATTTTTAGCCAGAGCAGATCGTACGGC
TCACTGAGTTCCGTTTGTGTTTTGGGAATTCCCACAGATCGTCGCACTTC
CGGCGAGAGGATGAGCAGATTTTGAGCAAGGCCAAAACTGCTGGAAGCTA
CCCAGTATACACATAAAGCTGAAGGCACTGTACAGGCTACTGGAACCATC
ACAACACTCAATCCACGGAACACATTGTTGGCGATGTTCTGCAAGCGTGT
AGAAGGACGAGTTCTAGACATGGCTTGCACTTCAATGATGGCCAAATTGA
TAAGACCTAATGCTACAGGCAGGATATAAGAGTTATCCACCACCGTAAGG
TTTGGTATCCAACCAAATCCGCCAATGGTCATTTCGGTGGTCACGATTTG
AGCTTGAATGGACGTGGGATCCGGCAGCATGTACACTAAATTGCGCAGAG
CCACGGATTGAAAGATCCACAGGGGAATCTGACCCCATAGCACAATCATG
GTCTTCATGGGATGGCAGTTATCCCGAACTATAAGGTTCTGCCACTGCTT
CTTGATCGAACGCCGATAAACAATCTGAGTCTGCTTTTCGCTCCACTTGA
ACTTGTGCTTGGCCATGGCTGCCTCTTTTTTCAGTTCCTCCACAATGGCC
GGCATCTCCAGCGCTATCTTTTCAATTCTGGCGGTGATTTTGTGCTGGTA
AATGGTCAGAGGCAGGGTGACCACGCTCCGAAAAAGGAAAGTGGACAGCA
CGATGGACGCCCACCAGGGCAGGCCACTGTAGTCGTGGATCTTAATGAGA
ACATCCTGCATATAGGCCACCGGCGTGCTGTGGGACAAG
BO10454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-PA | 1056 | CG4942-RA | 183..1053 | 889..19 | 4330 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-RA | 1306 | CG4942-RA | 285..1155 | 889..19 | 4340 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9073728..9074316 | 607..19 | 2945 | 100 | Minus |
| 3L | 28110227 | 3L | 9073389..9073671 | 889..607 | 1400 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:32:02 has no hits.
BO10454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:26 Download gff for
BO10454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-PA | 183..1056 | 16..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:36 Download gff for
BO10454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-PA | 183..1056 | 16..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:24:31 Download gff for
BO10454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 285..1161 | 12..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:59 Download gff for
BO10454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 285..1161 | 12..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:59 Download gff for
BO10454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9073389..9073671 | 607..889 | 99 | -> | Minus |
| 3L | 9073729..9074322 | 12..606 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:24:31 Download gff for
BO10454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9066489..9066771 | 607..889 | 99 | -> | Minus |
| arm_3L | 9066829..9067422 | 12..606 | 99 | | Minus |
BO10454.5prime Sequence
882 bp (855 high quality bases) assembled on 2006-04-19
> BO10454.5prime
GAAGTTATCAGTCGACATGTCAGCTTTGCTTCTTTTACGCACCTGTAGAA
GTTCATCAATTGCTGGCATCTACAAATACACATACCAAGGAACAACTATT
GCGAATCACACATGCAATCATCGTCTGTCGTCTACAGAAGCGGCGGCCGC
GAGTGTCCAACTGGCAAATGCCGGTGGATTGGTGGGATATTGGCAGACCT
TGTCCAACAGCACGCCGGTGGCCTATATGCAGGATGTTCTCATTAAGATC
CACGACTACAGTGGCCTGCCCTGGTGGGCGTCCATCGTGCTGTCCACTTT
CCTTTTTCGGAGCGTGGTCACCCTGCCTCTGACCATTTACCAGCACAAAA
TCACCGCCAGAATTGAAAAGATAGCGCTGGAGATGCCGGCCATTGTGGAG
GAACTGAAAAAAGAGGCAGCCATGGCCAAGCACAAGTTCAAGTGGAGCGA
AAAGCAGACTCAGATTGTTTATCGGCGTTCGATCAAGAAGCAGTGGCAGA
ACCTTATAGTTCGGGATAACTGCCATCCCATGAAGACCATGATTGTGCTA
TGGGGTCAGATTCCCCTGTGGATCTTTCAATCCGTGGCTCTGCGCAATTT
AGTGTACATGCTGCCGGATCCCACGTCCATTCAAGCTCAAATCGTGACCA
CCGAAATGACCATTGGCGGATTTGGTTGGATACCAAACCTTACGGTGGTG
GATAACTCTTATATCCTGCCTGTAGCATTAGGTCTTATCAATTTGGCCAT
CATTGAAGTGCAAGCCATGTCTAGAACTCGTCCTTCTACACGCTTGCAGA
ACATCGCCAACAATGTGTTCCGTGGATTGAGTGTTGTGATGGTTCCAGTA
GCCTGTACAGTGCCTTCAGCTTTATGTGTATA
BO10454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-PA | 1056 | CG4942-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-RA | 1306 | CG4942-RA | 103..968 | 17..882 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9073207..9073671 | 17..481 | 2325 | 100 | Plus |
| 3L | 28110227 | 3L | 9073728..9074129 | 481..882 | 2010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:42:31 has no hits.
BO10454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:27 Download gff for
BO10454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:37 Download gff for
BO10454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:25:48 Download gff for
BO10454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 103..967 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:17:04 Download gff for
BO10454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 103..967 | 17..881 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:17:04 Download gff for
BO10454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9073207..9073671 | 17..481 | 100 | -> | Plus |
| 3L | 9073729..9074128 | 482..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:25:48 Download gff for
BO10454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9066307..9066771 | 17..481 | 100 | -> | Plus |
| arm_3L | 9066829..9067228 | 482..881 | 100 | | Plus |
BO10454.complete Sequence
1087 bp (1087 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ638673
> BO10454.complete
GAAGTTATCAGTCGACATGTCAGCTTTGCTTCTTTTACGCACCTGTAGAA
GTTCATCAATTGCTGGCATCTACAAATACACATACCAAGGAACAACTATT
GCGAATCACACATGCAATCATCGTCTGTCGTCTACAGAAGCGGCGGCCGC
GAGTGTCCAACTGGCAAATGCCGGTGGATTGGTGGGATATTGGCAGACCT
TGTCCAACAGCACGCCGGTGGCCTATATGCAGGATGTTCTCATTAAGATC
CACGACTACAGTGGCCTGCCCTGGTGGGCGTCCATCGTGCTGTCCACTTT
CCTTTTTCGGAGCGTGGTCACCCTGCCTCTGACCATTTACCAGCACAAAA
TCACCGCCAGAATTGAAAAGATAGCGCTGGAGATGCCGGCCATTGTGGAG
GAACTGAAAAAAGAGGCAGCCATGGCCAAGCACAAGTTCAAGTGGAGCGA
AAAGCAGACTCAGATTGTTTATCGGCGTTCGATCAAGAAGCAGTGGCAGA
ACCTTATAGTTCGGGATAACTGCCATCCCATGAAGACCATGATTGTGCTA
TGGGGTCAGATTCCCCTGTGGATCTTTCAATCCGTGGCTCTGCGCAATTT
AGTGTACATGCTGCCGGATCCCACGTCCATTCAAGCTCAAATCGTGACCA
CCGAAATGACCATTGGCGGATTTGGTTGGATACCAAACCTTACGGTGGTG
GATAACTCTTATATCCTGCCTGTAGCATTAGGTCTTATCAATTTGGCCAT
CATTGAAGTGCAAGCCATGTCTAGAACTCGTCCTTCTACACGCTTGCAGA
ACATCGCCAACAATGTGTTCCGTGGATTGAGTGTTGTGATGGTTCCAGTA
GCCTGTACAGTGCCTTCAGCTTTATGTGTATACTGGGTAGCTTCCAGCAG
TTTTGGCCTTGCTCAAAATCTGCTCATCCTCTCGCCGGAAGTGCGACGAT
CTGTGGGAATTCCCAAAACACAAACGGAACTCAGTGAGCCGTACGATCTG
CTCTGGCTAAAAATACAGCAGAGGCTAAGACTTGCCGAGAGGGCGCCGGC
TGATAAGCCGGCAGCCAAAGCAAGCTTTCTAGACCAT
BO10454.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-RA | 1056 | CG4942-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-RA | 1306 | CG4942-RA | 103..1155 | 17..1069 | 5265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9073728..9074316 | 481..1069 | 2945 | 100 | Plus |
| 3L | 28110227 | 3L | 9073207..9073671 | 17..481 | 2325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:26:31 has no hits.
BO10454.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:33 Download gff for
BO10454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 1..1056 | 17..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:05 Download gff for
BO10454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 80..1138 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:12 Download gff for
BO10454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 103..1155 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:34 Download gff for
BO10454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 80..1138 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:31 Download gff for
BO10454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4942-RA | 103..1155 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:31 Download gff for
BO10454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9073207..9073671 | 17..481 | 100 | -> | Plus |
| 3L | 9073729..9074316 | 482..1071 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:12 Download gff for
BO10454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9066307..9066771 | 17..481 | 100 | -> | Plus |
| arm_3L | 9066829..9067416 | 482..1071 | 99 | | Plus |
BO10454.pep Sequence
Translation from 16 to 1087
> BO10454.pep
MSALLLLRTCRSSSIAGIYKYTYQGTTIANHTCNHRLSSTEAAAASVQLA
NAGGLVGYWQTLSNSTPVAYMQDVLIKIHDYSGLPWWASIVLSTFLFRSV
VTLPLTIYQHKITARIEKIALEMPAIVEELKKEAAMAKHKFKWSEKQTQI
VYRRSIKKQWQNLIVRDNCHPMKTMIVLWGQIPLWIFQSVALRNLVYMLP
DPTSIQAQIVTTEMTIGGFGWIPNLTVVDNSYILPVALGLINLAIIEVQA
MSRTRPSTRLQNIANNVFRGLSVVMVPVACTVPSALCVYWVASSSFGLAQ
NLLILSPEVRRSVGIPKTQTELSEPYDLLWLKIQQRLRLAERAPADKPAA
KASFLDH
BO10454.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4942-PA | 351 | CG4942-PA | 1..351 | 1..351 | 1798 | 100 | Plus |
| CG6404-PA | 441 | CG6404-PA | 128..362 | 62..320 | 205 | 26.5 | Plus |
| CG6404-PB | 441 | CG6404-PB | 128..362 | 62..320 | 205 | 26.5 | Plus |
