Clone Sequence Records
BO10455.3prime Sequence
902 bp (819 high quality bases) assembled on 2006-04-19
> BO10455.3prime
ATGGTCTAGAAAGCTTGCGGTTTTCTGTTTTTTGGGTGGCTTGGGTTTGA
AACGATCCAGAACGGAGCGTGGTGCCTTGGTCTTGGCCTTGCCCTTGGCA
CCCACCTCGTCGGCTGTGTGCTGCTTGATAACGTTCTTCTTGGCCTCGCG
CACCTCGGCAATAAACTCCTTTCGCTTGGCATCCTTGACGATCTGTTTGT
TGCGCGCCGCCTTGGCAGTGCCGCCACGTCCCTTCATCTTGTGGCGCGAT
TTCATGTTGATGCGCGGCGCCTTCAAATGGAACAGCTTCCTCTTGGCATC
GATCTTCTCCTGCAGCGTGGGCGCATCCACGCCAGTGATCTCTTGCGGAT
CCAGGGTGATCAGTTCGGGCGGAATCTTCTCCAGCAGAGCGTGAACCTCG
TGCTCGCGTCGTTGCTTCGAAGTCTCATACGGATTGTCTTCCATAGCATC
GAAGTTGGGCTCTCCAGAGCCGGGCACCAATAGCGATTGGAAGCCCTTGG
CCGTCGACACACCAAGCACATCTTCGTACGGGCAGAAACGCAGCCCGTGG
ACAAAGGCATCGCAGCGTTGGCGGATATAAGGCAACCGGGTACCGTCACC
CGAACCTCCGCCGGAGAGCAGATCCGAGTAGGTCTCCAGATAGGTGCCCT
GCGATAGCGCCAGCATGCCACGTTGCGACACATCCAGTTCGTTGGCGGGC
AGACGCAGCTGGAAATGAGTCAGCGGCTTGTCGTGCACCAGCATCCGAAT
GTCCCAAACTTTCACAGCCCTATCCAAGCCAGCGGTAACCAAATACTGGC
CCTTGGGTTCCACCGCCAGAGCAGACATGGCTGTCGAATGGCACAGGAGC
TTGGCCCAGCGCTCACGCACTTTGGGCGAACACATGGACACCACACCACG
TC
BO10455.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2260-PA | 1830 | CG2260-RA | 990..1827 | 856..19 | 4190 | 100 | Minus |
| CG2260-PA | 1830 | CG2260-RA | 944..985 | 902..861 | 185 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2260-RA | 2004 | CG2260-RA | 1060..1943 | 902..19 | 4360 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8119354..8120088 | 168..902 | 3600 | 99.3 | Plus |
| X | 23542271 | X | 8119143..8119294 | 19..170 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:42:40 has no hits.
BO10455.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:28 Download gff for
BO10455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-PA | 944..1830 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:39 Download gff for
BO10455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-PA | 944..1830 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:44 Download gff for
BO10455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 1060..1947 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:40 Download gff for
BO10455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 1060..1947 | 15..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:40 Download gff for
BO10455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8119139..8119292 | 15..168 | 98 | <- | Plus |
| X | 8119355..8120088 | 169..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:44 Download gff for
BO10455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8013172..8013325 | 15..168 | 98 | <- | Plus |
| arm_X | 8013388..8014121 | 169..902 | 99 | | Plus |
BO10455.5prime Sequence
957 bp (835 high quality bases) assembled on 2006-04-19
> BO10455.5prime
GAAGTTATCAGTCGACATGACGAAAGTAACGCCGAAAGGGCGCCCGAAGG
CTAAGACGCCGTACAAACGCTACTTCGACGGCCAAAAGGACACAGAAACG
GGCGACGGCGATCTAAAACATGTAAAAGTGTTCAGCAAAAACCGACAGAA
TTTCACTGGCGATTTTATCAGTATGATTAATAAAACGAAGAAGCCGCGTC
CCCAAAAGGCTCCCGCCAAACCCACAAAGGAGGAGCTGGAAGCTAGGCCC
AAGAAGAACCCGATTCCCAAGGAGATCCTCGACAAGTACTCACGTGGCGA
GCAAGTGCAGCCGAAAGGTGTGAAAACGCGGCACTTCAAGGAGCAGCAGA
CGCGCAAGGAGGTCTACCTCGAATACGCCACCGAGCAGGCGGCCCGCACA
GAGCTCCTACTCCAGGAAACCGCTGGGCAGCTACAGGCAGATGAGGGCGA
GACCACCGCCGAATTTAGACAGTCCCAAATTGCCGAGAATGTGGATATCC
AGTCATCGGCCAAGCACTTCAACCTGAACATGGAATTCGGTCCTTACCGA
ATGCGCTACACCAAGAACGGCAGGCATTTGCTGCTCGGCGGCAAACGCGG
TCATGTGGCCGCCTTCGATTGGGTGACCAAGCGTCTGCACTGCGAATTCA
ATGCGATGGAGAGCGTCGAGGATGTTCAGTGGCTGCATGTGCCCACCATG
TACGCGGTGGCCCAGAAGAGCTGGGTCTATTTCTACGACAAAAAGGGCAC
CGAACTGCATTGCATCAAGCGGCTGAATCGGGTCAATCGCCTGGACTTCC
TGCCCTACCACTTCCTCCTGGCCGCCGGCAACAGTGCGGGCTATGCTTCC
TGGCTGGACGTCTCCATTGGCGAGCTGGTGGGTAACTTTTACACGGGACT
GGGCGATATACGCATGCTGCGACACAATCCCCGAAATGGTGTACTCTGCA
TTGGCGG
BO10455.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2260-PA | 1830 | CG2260-RA | 1..941 | 17..957 | 4680 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2260-RA | 2004 | CG2260-RA | 117..1057 | 17..957 | 4690 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8120091..8121031 | 957..17 | 4690 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:29:47 has no hits.
BO10455.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:29 Download gff for
BO10455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:40 Download gff for
BO10455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:09 Download gff for
BO10455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 110..1057 | 9..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:01:04 Download gff for
BO10455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 110..1057 | 9..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:01:04 Download gff for
BO10455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8120091..8121038 | 9..957 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:09 Download gff for
BO10455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8014124..8015071 | 9..957 | 99 | | Minus |
BO10455.complete Sequence
1861 bp (1861 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631768
> BO10455.complete
GAAGTTATCAGTCGACATGACGAAAGTAACGCCGAAAGGGCGCCCGAAGG
CTAAGACGCCGTACAAACGCTACTTCGACGGCCAAAAGGACACAGAAACG
GGCGACGGCGATCTAAAACATGTAAAAGTGTTCAGCAAAAACCGACAGAA
TTTCACTGGCGATTTTATCAGTATGATTAATAAAACGAAGAAGCCGCGTC
CCCAAAAGGCTCCCGCCAAACCCACAAAGGAGGAGCTGGAAGCTAGGCCC
AAGAAGAACCCGATTCCCAAGGAGATCCTCGACAAGTACTCACGTGGCGA
GCAAGTGCAGCCGAAAGGTGTGAAAACGCGGCACTTCAAGGAGCAGCAGA
CGCGCAAGGAGGTCTACCTCGAATACGCCACCGAGCAGGCGGCCCGCACA
GAGCTCCTACTCCAGGAAACCGCTGGGCAGCTACAGGCAGATGAGGGCGA
GACCACCGCCGAATTTAGACAGTCCCAAATTGCCGAGAATGTGGATATCC
AGTCATCGGCCAAGCACTTCAACCTGAACATGGAATTCGGTCCTTACCGA
ATGCGCTACACCAAGAACGGCAGGCATTTGCTGCTCGGCGGCAAACGCGG
TCATGTGGCCGCCTTCGATTGGGTGACCAAGCGTCTGCACTGCGAATTCA
ATGCGATGGAGAGCGTCGAGGATGTTCAGTGGCTGCATGTGCCCACCATG
TACGCGGTGGCCCAGAAGAGCTGGGTCTATTTCTACGACAAAAAGGGCAC
CGAACTGCATTGCATCAAGCGGCTGAATCGGGTCAATCGCCTGGACTTCC
TGCCCTACCACTTCCTCCTGGCCGCCGGCAACAGTGCGGGCTATGCTTCC
TGGCTGGACGTCTCCATTGGCGAGCTGGTGGGTAACTTTAACACGGGACT
GGGCGATATACGCATGCTGCGACACAATCCCCGAAATGGTGTACTCTGCA
TTGGCGGCGGACGTGGTGTGGTGTCCATGTGGTCGCCCAAAGTGCGTGAG
CCGCTGGCCAAGCTCCTGTGCCATTCGACAGCCATGTCTGCTCTGGCGGT
GGAACCCAAGGGCCAGTATTTGGTTACCGCTGGCTTGGATAGGGCTGTGA
AAGTTTGGGACATTCGGATGCTGGTGCACGACAAGCCGCTGACTCATTTC
CAGCTGCGTCTGCCCGCCAACGAACTGGATGTGTCGCAACGTGGCATGCT
GGCGCTATCGCAGGGCACCTATCTGGAGACCTACTCGGATCTGCTCTCCG
GCGGAGGTTCGGGTGACGGTACCCGGTTGCCTTATATCCGCCAACGCTGC
GATGCCTTTGTCCACGGGCTGCGTTTCTGCCCGTACGAAGATGTGCTTGG
TGTGTCGACGGCCAAGGGCTTCCAATCGCTATTGGTGCCCGGCTCTGGAG
AGCCCAACTTCGATGCTATGGAAGACAATCCGTATGAGACTTCGAAGCAA
CGACGCGAGCACGAGGTTCACGCTCTGCTGGAGAAGATTCCGCCCGAACT
GATCACCCTGGATCCGCAAGAGATCACTGGCGTGGATGCGCCCACGCTGC
AGGAGAAGATCGATGCCAAGAGGAAGCTGTTCCATTTGAAGGCGCCGCGC
ATCAACATGAAATCGCGCCACAAGATGAAGGGACGTGGCGGCACTGCCAA
GGCGGCGCGCAACAAACAGATCGTCAAGGATGCCAAGCGAAAGGAGTTTA
TTGCCGAGGTGCGCGAGGCCAAGAAGAACGTTATCAAGCAGCACACAGCC
GACGAGGTGGGTGCCAAGGGCAAGGCCAAGACCAAGGCACCACGCTCCGT
TCTGGATCGTTTCAAACCCAAGCCACCCAAAAAACAGAAAACCGCAAGCT
TTCTAGACCAT
BO10455.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2260-RA | 1830 | CG2260-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2260-RA | 2004 | CG2260-RA | 117..1943 | 17..1843 | 9135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8119354..8121031 | 1694..17 | 8390 | 100 | Minus |
| X | 23542271 | X | 8119143..8119294 | 1843..1692 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:04:19 has no hits.
BO10455.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:35 Download gff for
BO10455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 1..1830 | 17..1846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:00 Download gff for
BO10455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 83..1920 | 9..1847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:58 Download gff for
BO10455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 117..1943 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:35 Download gff for
BO10455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 83..1920 | 9..1847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:20 Download gff for
BO10455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 117..1943 | 17..1845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:20 Download gff for
BO10455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8119140..8119292 | 1694..1845 | 98 | <- | Minus |
| X | 8119355..8121031 | 17..1693 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:58 Download gff for
BO10455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8013173..8013325 | 1694..1845 | 98 | <- | Minus |
| arm_X | 8013388..8015064 | 17..1693 | 100 | | Minus |
BO10455.pep Sequence
Translation from 16 to 1861
> BO10455.pep
MTKVTPKGRPKAKTPYKRYFDGQKDTETGDGDLKHVKVFSKNRQNFTGDF
ISMINKTKKPRPQKAPAKPTKEELEARPKKNPIPKEILDKYSRGEQVQPK
GVKTRHFKEQQTRKEVYLEYATEQAARTELLLQETAGQLQADEGETTAEF
RQSQIAENVDIQSSAKHFNLNMEFGPYRMRYTKNGRHLLLGGKRGHVAAF
DWVTKRLHCEFNAMESVEDVQWLHVPTMYAVAQKSWVYFYDKKGTELHCI
KRLNRVNRLDFLPYHFLLAAGNSAGYASWLDVSIGELVGNFNTGLGDIRM
LRHNPRNGVLCIGGGRGVVSMWSPKVREPLAKLLCHSTAMSALAVEPKGQ
YLVTAGLDRAVKVWDIRMLVHDKPLTHFQLRLPANELDVSQRGMLALSQG
TYLETYSDLLSGGGSGDGTRLPYIRQRCDAFVHGLRFCPYEDVLGVSTAK
GFQSLLVPGSGEPNFDAMEDNPYETSKQRREHEVHALLEKIPPELITLDP
QEITGVDAPTLQEKIDAKRKLFHLKAPRINMKSRHKMKGRGGTAKAARNK
QIVKDAKRKEFIAEVREAKKNVIKQHTADEVGAKGKAKTKAPRSVLDRFK
PKPPKKQKTASFLDH
BO10455.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2260-PA | 609 | CG2260-PA | 1..609 | 1..609 | 3202 | 100 | Plus |
