Clone Sequence Records
BO10456.3prime Sequence
919 bp (867 high quality bases) assembled on 2006-04-19
> BO10456.3prime
ATGGTCTAGAAAGCTTGCCCAGCTCAACTCATCGGGCAGCCCACCGGGAT
ATTCACCAGTGAGACAGGCGGTGCAGTGGCCCGTTCCCTTGGATTTACTA
TCGCCTGCATCGCGGTGCTTTAGTTGGACAGCCTCCACTAGTCCCTCCAC
ACTAAGATAAGCCAGACTGTCGGCGCCCACATGCCTAGCTAGTTGGTCGG
GGTTCAGCTTGTTGGCAATCAATTCCTCTCGAGTTGGAATATTTATACCC
ATATAGCATGGGTACTGCAGCGGTGGGCTGGCAATGCGGATGTGCACCTC
CCGGGCGCCTGCATCCCGTAGCAGCTTGATTATTGGTCCAATGGTGTTGC
CGCGCACAATGGAATCGTCTATCAGGACCAATCTCTTGCCAGCCACGTTC
TCGGATAGGGCTCCGAACTTCTTGGCTACTCCCAACTGCCGCAGCCGGGT
AGAGGGTTGAATAAACGTCCGTCCCACGTAGCGATTCCTGCAGAGAACCT
CGGCAAATTCAATGCCAGACTCACGGGCATAGCCATGCGCCGCCGCTGTG
CCAGACTCGGGAACGGAACTCACAATATCCGCCTCCACTGGAGCCTCTCG
CCACAGCTGCCGGCCGCACTGCAGCCTCACTGTGTACACCATCTGACCCT
CGAAGATGCTGTCTCCGCGGGCGAAGTAAACGTACTCAAATATACAAAAG
GCCATGCGCTTGAAGTCGGGTCTTTCCACAATGTCCACCGTGCGGTAGCC
ACTTCGCGACAGCTCCACTATCTCTCCAGGCTCCACTTCGCGGACGTATC
TGGCACCGATCGACAGGAAGCCACAGCTCTCACTGGACACCACCCAACCA
TCGGCAGGTGTGTCTAAGTTATTTCCGTGCCCAGCATTGATGGGCACTAT
CTTGGCAATGCATAGCGGC
BO10456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2867-PA | 1641 | Prat-RA | 738..1638 | 919..19 | 4480 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 2105 | CG2867-RB | 831..1731 | 919..19 | 4490 | 99.9 | Minus |
| Prat-RA | 2102 | CG2867-RA | 828..1728 | 919..19 | 4490 | 99.9 | Minus |
| Prat2-RA | 1737 | CG10078-RA | 806..1536 | 855..125 | 955 | 75.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7909972..7910872 | 19..919 | 4490 | 99.9 | Plus |
| 3L | 28110227 | 3L | 6912200..6912930 | 125..855 | 955 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:08:47 has no hits.
BO10456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:30 Download gff for
BO10456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-PA | 738..1641 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:41 Download gff for
BO10456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2867-PA | 738..1641 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:42 Download gff for
BO10456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 828..1728 | 19..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:54 Download gff for
BO10456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 828..1728 | 19..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:54 Download gff for
BO10456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7909972..7910872 | 19..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:42 Download gff for
BO10456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3735694..3736594 | 19..919 | 99 | | Plus |
BO10456.5prime Sequence
862 bp (824 high quality bases) assembled on 2006-04-19
> BO10456.5prime
GAAGTTATCAGTCGACATGTCAGCGCCACAGCAACAACAACAGTCGCAGC
AGAAGCAACAACAACATGTGCGCGTGGTCGAGCAACAACAGGTGGAACCA
GCTGAGGCGGTGACCTCCAGCATGGAATCGGAATCCATCTCGGCCAGCAA
GGAGCTAACCGGTTTGACGCACGAGTGCGGCGTTTTCGGGGCAATCGCTT
GCGGAGATTGGCCCACCCAAATGGACATTGCACACGTGATCTGTTTGGGG
CTGGTGGCACTGCAGCATCGTGGGCAGGAGTCTGCGGGCATAGCGACCAG
CGAGGGAAAGTGCTCCAAGAACTTCAACGTGCACAAGGGCATGGGTATGA
TCAGCACCCTGTTCAACGACGACTCCATGAAGAAGCTTCGTGGCAACCTG
GGCATCGGTCATACACGCTACTCGACCGCTGGCGGATCCGGAGTGGTTAA
CTGTCAGCCCTTTGAGGTACATACGACACATGGAGCATTGGCCCTGGCCC
ACAATGGTGAGCTTGTTAACAACGAATCTCTAAGAAGGGAGGTTTTGGCC
AGAGGCGTGGGCTTATCCACGCACAGCGACAGTGAGTTGATCGCCCAGTC
GTTGTGCTGCGCCCCGGAGGATGTTTCCGAACTGGATGGACCCAACTGGC
CAGCTAGGATCAGGCATTTCATGATGCTGGCGCCACTCTCCTACTCGCTG
GTCATCATGCTAAAGGACAAAATCTACGCCGTGAGGGACACCTATGGAAA
TAGGCCGCTATGCATTGGCAAGATAGTGCCCATCAATGCTGGGCACGGAA
ATAACTTAGACACACCTGCCGATGGTTGGGTGGTGTCCAGTGAGAGCTGT
GGCTTCCTGTCG
BO10456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2867-PA | 1641 | Prat-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 2105 | CG2867-RB | 92..939 | 15..862 | 4240 | 100 | Plus |
| Prat-RA | 2102 | CG2867-RA | 89..936 | 15..862 | 4240 | 100 | Plus |
| Prat2-RB | 1932 | CG10078-RB | 355..1041 | 172..858 | 960 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7910764..7911611 | 862..15 | 4240 | 100 | Minus |
| 3L | 28110227 | 3L | 6912890..6913526 | 858..222 | 890 | 76 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:35:37 has no hits.
BO10456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:31 Download gff for
BO10456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:43 Download gff for
BO10456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2867-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:28 Download gff for
BO10456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 77..936 | 2..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:00 Download gff for
BO10456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 77..936 | 2..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:00 Download gff for
BO10456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7910764..7911616 | 9..862 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:28 Download gff for
BO10456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3736486..3737338 | 9..862 | 99 | | Minus |
BO10456.complete Sequence
1672 bp (1672 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631769
> BO10456.complete
GAAGTTATCAGTCGACATGTCAGCGCCACAGCAACAACAACAGTCGCAGC
AGAAGCAACAACAACATGTGCGCGTGGTCGAGCAACAACAGGTGGAACCA
GCTGAGGCGGTGACCTCCAGCATGGAATCGGAATCCATCTCGGCCAGCAA
GGAGCTAACCGGTTTGACGCACGAGTGCGGCGTTTTCGGGGCAATCGCTT
GCGGAGATTGGCCCACCCAAATGGACATTGCACACGTGATCTGTTTGGGG
CTGGTGGCACTGCAGCATCGTGGGCAGGAGTCTGCGGGCATAGCGACCAG
CGAGGGAAAGTGCTCCAAGAACTTCAACGTGCACAAGGGCATGGGTATGA
TCAGCACCCTGTTCAACGACGACTCCATGAAGAAGCTTCGTGGCAACCTG
GGCATCGGTCATACACGCTACTCGACCGCTGGCGGATCCGGAGTGGTTAA
CTGTCAGCCCTTTGAGGTACATACGACACATGGAGCATTGGCCCTGGCCC
ACAATGGTGAGCTTGTTAACAACGAATCTCTAAGAAGGGAGGTTTTGGCC
AGAGGCGTGGGCTTATCCACGCACAGCGACAGTGAGTTGATCGCCCAGTC
GTTGTGCTGCGCCCCGGAGGATGTTTCCGAACTGGATGGACCCAACTGGC
CAGCTAGGATCAGGCATTTCATGATGCTGGCGCCACTCTCCTACTCGCTG
GTCATCATGCTAAAGGACAAAATCTACGCCGTGAGGGACACCTATGGAAA
TAGGCCGCTATGCATTGGCAAGATAGTGCCCATCAATGCTGGGCACGGAA
ATAACTTAGACACACCTGCCGATGGTTGGGTGGTGTCCAGTGAGAGCTGT
GGCTTCCTGTCGATCGGTGCCAGATACGTCCGCGAAGTGGAGCCTGGAGA
GATAGTGGAGCTGTCGCGAAGTGGCTACCGCACGGTGGACATTGTGGAAA
GACCCGACTTCAAGCGCATGGCCTTTTGTATATTTGAGTACGTTTACTTC
GCCCGCGGAGACAGCATCTTCGAGGGTCAGATGGTGTACACAGTGAGGCT
GCAGTGCGGCCGGCAGCTGTGGCGAGAGGCTCCAGTGGAGGCGGATATTG
TGAGTTCCGTTCCCGAGTCTGGCACAGCGGCGGCGCATGGCTATGCCCGT
GAGTCTGGCATTGAATTTGCCGAGGTTCTCTGCAGGAATCGCTACGTGGG
ACGGACGTTTATTCAACCCTCTACCCGGCTGCGGCAGTTGGGAGTAGCCA
AGAAGTTCGGAGCCCTATCCGAGAACGTGGCTGGCAAGAGATTGGTCCTG
ATAGACGATTCCATTGTGCGCGGCAACACCATTGGACCAATAATCAAGCT
GCTACGGGATGCAGGCGCCCGGGAGGTGCACATCCGCATTGCCAGCCCAC
CGCTGCAGTACCCATGCTATATGGGTATAAATATTCCAACTCGAGAGGAA
TTGATTGCCAACAAGCTGAACCCCGACCAACTAGCTAGGCATGTGGGCGC
CGACAGTCTGGCTTATCTTAGTGTGGAGGGACTAGTGGAGGCTGTCCAAC
TAAAGCACCGCGATGCAGGCGATAGTAAATCCAAGGGAACGGGCCACTGC
ACCGCCTGTCTCACTGGTGAATATCCCGGTGGGCTGCCCGATGAGTTGAG
CTGGGCAAGCTTTCTAGACCAT
BO10456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 1641 | CG2867-PB | 1..1638 | 17..1654 | 8190 | 100 | Plus |
| Prat-RA | 1641 | CG2867-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
| Prat2-RB | 1644 | CG10078-PB | 168..1544 | 172..1548 | 1830 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 2105 | CG2867-RB | 92..1731 | 15..1654 | 8200 | 100 | Plus |
| Prat-RA | 2102 | CG2867-RA | 89..1728 | 15..1654 | 8200 | 100 | Plus |
| Prat2-RB | 1932 | CG10078-RB | 355..1731 | 172..1548 | 1830 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7909972..7911611 | 1654..15 | 8200 | 100 | Minus |
| 3L | 28110227 | 3L | 6912200..6913526 | 1548..222 | 1760 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:51:30 has no hits.
BO10456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:35 Download gff for
BO10456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 1..1641 | 17..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:07 Download gff for
BO10456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 82..1731 | 3..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:59 Download gff for
BO10456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 91..1728 | 17..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:35 Download gff for
BO10456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 82..1731 | 3..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:46 Download gff for
BO10456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 91..1728 | 17..1656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:46 Download gff for
BO10456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7909969..7911609 | 17..1656 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:59 Download gff for
BO10456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3735691..3737331 | 17..1656 | 99 | | Minus |
BO10456.pep Sequence
Translation from 16 to 1672
> BO10456.pep
MSAPQQQQQSQQKQQQHVRVVEQQQVEPAEAVTSSMESESISASKELTGL
THECGVFGAIACGDWPTQMDIAHVICLGLVALQHRGQESAGIATSEGKCS
KNFNVHKGMGMISTLFNDDSMKKLRGNLGIGHTRYSTAGGSGVVNCQPFE
VHTTHGALALAHNGELVNNESLRREVLARGVGLSTHSDSELIAQSLCCAP
EDVSELDGPNWPARIRHFMMLAPLSYSLVIMLKDKIYAVRDTYGNRPLCI
GKIVPINAGHGNNLDTPADGWVVSSESCGFLSIGARYVREVEPGEIVELS
RSGYRTVDIVERPDFKRMAFCIFEYVYFARGDSIFEGQMVYTVRLQCGRQ
LWREAPVEADIVSSVPESGTAAAHGYARESGIEFAEVLCRNRYVGRTFIQ
PSTRLRQLGVAKKFGALSENVAGKRLVLIDDSIVRGNTIGPIIKLLRDAG
AREVHIRIASPPLQYPCYMGINIPTREELIANKLNPDQLARHVGADSLAY
LSVEGLVEAVQLKHRDAGDSKSKGTGHCTACLTGEYPGGLPDELSWASFL
DH
BO10456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-PB | 546 | CG2867-PB | 1..546 | 1..546 | 2848 | 100 | Plus |
| Prat-PA | 546 | CG2867-PA | 1..546 | 1..546 | 2848 | 100 | Plus |
| Prat2-PB | 547 | CG10078-PB | 49..547 | 45..546 | 2212 | 83.5 | Plus |
| Prat2-PA | 470 | CG10078-PA | 1..470 | 74..546 | 2097 | 84.4 | Plus |
