Clone Sequence Records
BO10461.3prime Sequence
958 bp (833 high quality bases) assembled on 2006-04-19
> BO10461.3prime
ATGGTCTAGAAAGCTTGCCTGACACAGAGGTTTTCTAGCCAGCGGCGAGA
AGCGATTCTTTTGGAAATGGCTATTGATGGGTACTTCCTCGACTTCGGAC
TCGCTCTCCGTCTCCATGGGTTCGCCTGCGTCATTCGGCTGATCGTAGAA
TTCATTTAGTTGTGGATATAGAGTGTTTACTGCGGTGGTCGGCTGGAGCA
GGCGACCACGGGCCAGATTGGATCCACTAACTGGAACACTCTGTCGCTGG
CGAATGGGTGCTGGAGCTGGTGCTGGGCCACCAAAAGGCCTAGCGGATCC
GCTGAAAGTGTTTCTTGGCGAAATGGGTGAAAGTTTTGGATTGTACGTAG
ATGACTCCTCGTAGCTGGTTGAGTTTAAGTTGGTTTGAGTCAGCAGGGGA
CGCGAAAAACCCAAATCTGTGGGTCTGTATGTCGAAGGTTCGATGCGTGG
CTCGTATGTGGGAAGTGCGTGAAGAGTGGCGGCTGGCACATGGGGTCTTT
CGTAGGTGTAGCTGCGTGGTATATCCTCCTGTTCGTACAGCGGCTGGTCA
ACTTCGCGTGTGTAAGATGTGGTCAAAACTCCGGATTTGGCTAGAGAAAC
ATAACGTCTAGGCTGCTGGTCCTTGGAGTAATTAGGCACCGGAGAGTCCA
CCATGTAGGAGTCGTCGTCCTCCGACTGGGAGCTCATATCCGACACCGTG
GTAGTAGTCTGCACAGATCTTCCCGAGATCGAGGTGTTGTCTAGTCCATA
GGCGATTGTGCGACGACTTTGTTCGCTGATCTTGTTGTTGTTGCTGCTAG
TGCGTCCTGCACTCTTGCCGGGCGTACGACGCACTGGCTCCGATGTGGGC
GTCGTTACCTGGCTGCCGTGTACGGTCTCACGCCTCGGAATCGCTTTCTT
ACTTGCAGATTTGCTTTTGTTCAGCGGAACCCCGGTGATTTTGGGCTTTA
GTCGGCGA
BO10461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9424-PA | 1056 | bocksbeutel-RA | 114..1053 | 958..19 | 4675 | 99.8 | Minus |
| CG9424-PB | 1200 | bocksbeutel-RB | 114..1047 | 958..25 | 4645 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bocksbeutel-RA | 1435 | CG9424-RA | 187..1126 | 958..19 | 4685 | 99.9 | Minus |
| bocksbeutel-RB | 1535 | CG9424-RB | 187..1120 | 958..25 | 4655 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9589883..9590816 | 25..958 | 4655 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-12 13:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1129..1166 | 810..772 | 111 | 79.5 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3184..3368 | 926..733 | 109 | 58.1 | Minus |
BO10461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:40 Download gff for
BO10461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9424-PA | 115..1056 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:54 Download gff for
BO10461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9424-PA | 115..1056 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:46 Download gff for
BO10461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 188..1133 | 12..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:43:05 Download gff for
BO10461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 188..1133 | 12..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:43:05 Download gff for
BO10461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9589875..9590815 | 16..957 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:46 Download gff for
BO10461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5415597..5416537 | 16..957 | 99 | | Plus |
BO10461.5prime Sequence
861 bp (846 high quality bases) assembled on 2006-04-19
> BO10461.5prime
GAAGTTATCAGTCGACATGTCGGACCTTTCTTACCTGGACACGTTGGGCA
ACAAGGAGCTGCTGGCCAAGTGCCTGGAGCACGGCCTGCCCGGTGTTCCC
GTGACGGACAGCACCCGCAGCGTCATAATTCGCCGACTAAAGGCCAAAAT
CACCGGGGTTCCGCTGAACAAAAGCAAATCTGCAAGTAAGAAAGCGATTC
CGAGGCGTGAGACCGTACACGGCAGCCAGGTAACGACGCCCACATCGGAG
CCAGTGCGTCGTACGCCCGGCAAGAGTGCAGGACGCACTAGCAGCAACAA
CAACAAGATCAGCGAACAAAGTCGTCGCACAATCGCCTATGGACTAGACA
ACACCTCGATCTCGGGAAGATCTGTGCAGACTACTACCACGGTGTCGGAT
ATGAGCTCCCAGTCGGAGGACGACGACTCCTACATGGTGGACTCTCCGGT
GCCTAATTACTCCAAGGACCAGCAGCCTAGACGTTATGTTTCTCTAGCCA
AATCCGGAGTTTTGACCACATCTTACACACGCGAAGTTGACCAGCCGCTG
TACGAACAGGAGGATATACCACGCAGCTACACCTACGAAAGACCCCATGT
GCCAGCCGCCACTCTTCACGCACTTCCCACATACGAGCCACGCATCGAAC
CTTCGACATACAGACCCACAGATTTGGGTTTTTCGCGTCCCCTGCTGACT
CAAACCAACTTAAACTCAACCAGCTACGAGGAGTCATCTACGTACAATCC
AAAACTTTCACCCATTTCGCCAAGAAACACTTTCAGCGGATCCGCTAGGC
CTTTTGGTGGCCCAGCACCAGCTCCAGCACCCATTCGCCAGCGACAGAGT
GTTCCAGTTAG
BO10461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9424-PA | 1056 | bocksbeutel-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG9424-PB | 1200 | bocksbeutel-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bocksbeutel-RB | 1535 | CG9424-RB | 74..918 | 17..861 | 4225 | 100 | Plus |
| bocksbeutel-RA | 1435 | CG9424-RA | 74..918 | 17..861 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9590085..9590929 | 861..17 | 4225 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 09:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1129..1166 | 278..316 | 111 | 79.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3184..3368 | 162..355 | 109 | 58.1 | Plus |
BO10461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:41 Download gff for
BO10461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9424-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:55 Download gff for
BO10461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9424-PB | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:22 Download gff for
BO10461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 74..918 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:46 Download gff for
BO10461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 74..918 | 17..861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:46 Download gff for
BO10461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9590085..9590929 | 17..861 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:22 Download gff for
BO10461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5415807..5416651 | 17..861 | 100 | | Minus |
BO10461.complete Sequence
1087 bp (1087 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631772
> BO10461.complete
GAAGTTATCAGTCGACATGTCGGACCTTTCTTACCTGGACACGTTGGGCA
ACAAGGAGCTGCTGGCCAAGTGCCTGGAGCACGGCCTGCCCGGTGTTCCC
GTGACGGACAGCACCCGCAGCGTCATAATTCGCCGACTAAAGGCCAAAAT
CACCGGGGTTCCGCTGAACAAAAGCAAATCTGCAAGTAAGAAAGCGATTC
CGAGGCGTGAGACCGTACACGGCAGCCAGGTAACGACGCCCACATCGGAG
CCAGTGCGTCGTACGCCCGGCAAGAGTGCAGGACGCACTAGCAGCAACAA
CAACAAGATCAGCGAACAAAGTCGTCGCACAATCGCCTATGGACTAGACA
ACACCTCGATCTCGGGAAGATCTGTGCAGACTACTACCACGGTGTCGGAT
ATGAGCTCCCAGTCGGAGGACGACGACTCCTACATGGTGGACTCTCCGGT
GCCTAATTACTCCAAGGACCAGCAGCCTAGACGTTATGTTTCTCTAGCCA
AATCCGGAGTTTTGACCACATCTTACACACGCGAAGTTGACCAGCCGCTG
TACGAACAGGAGGATATACCACGCAGCTACACCTACGAAAGACCCCATGT
GCCAGCCGCCACTCTTCACGCACTTCCCACATACGAGCCACGCATCGAAC
CTTCGACATACAGACCCACAGATTTGGGTTTTTCGCGTCCCCTGCTGACT
CAAACCAACTTAAACTCAACCAGCTACGAGGAGTCATCTACGTACAATCC
AAAACTTTCACCCATTTCGCCAAGAAACACTTTCAGCGGATCCGCTAGGC
CTTTTGGTGGCCCAGCACCAGCTCCAGCACCCATTCGCCAGCGACAGAGT
GTTCCAGTTAGTGGATCCAATCTGGCCCGTGGTCGCCTGCTCCAGCCGAC
CACCGCAGTAAACACTCTATATCCACAACTAAATGAATTCTACGATCAGC
CGAATGACGCAGGCGAACCCATGGAGACGGAGAGCGAGTCCGAAGTCGAG
GAAGTACCCATCAATAGCCATTTCCAAAAGAATCGCTTCTCGCCGCTGGC
TAGAAAACCTCTGTGTCAGGCAAGCTTTCTAGACCAT
BO10461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bocksbeutel-RA | 1056 | CG9424-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
| bocksbeutel-RB | 1200 | CG9424-PB | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bocksbeutel-RA | 1435 | CG9424-RA | 74..1126 | 17..1069 | 5265 | 100 | Plus |
| bocksbeutel-RB | 1535 | CG9424-RB | 74..1120 | 17..1063 | 5235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9589883..9590929 | 1063..17 | 5235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1129..1166 | 278..316 | 111 | 79.5 | Plus |
BO10461.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:37 Download gff for
BO10461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 1..1056 | 17..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:11 Download gff for
BO10461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 59..1118 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:41 Download gff for
BO10461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 74..1126 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:37 Download gff for
BO10461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 59..1118 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:13 Download gff for
BO10461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bocksbeutel-RA | 74..1126 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:13 Download gff for
BO10461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9589876..9590929 | 17..1071 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:41 Download gff for
BO10461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5415598..5416651 | 17..1071 | 99 | | Minus |
BO10461.pep Sequence
Translation from 16 to 1087
> BO10461.pep
MSDLSYLDTLGNKELLAKCLEHGLPGVPVTDSTRSVIIRRLKAKITGVPL
NKSKSASKKAIPRRETVHGSQVTTPTSEPVRRTPGKSAGRTSSNNNKISE
QSRRTIAYGLDNTSISGRSVQTTTTVSDMSSQSEDDDSYMVDSPVPNYSK
DQQPRRYVSLAKSGVLTTSYTREVDQPLYEQEDIPRSYTYERPHVPAATL
HALPTYEPRIEPSTYRPTDLGFSRPLLTQTNLNSTSYEESSTYNPKLSPI
SPRNTFSGSARPFGGPAPAPAPIRQRQSVPVSGSNLARGRLLQPTTAVNT
LYPQLNEFYDQPNDAGEPMETESESEVEEVPINSHFQKNRFSPLARKPLC
QASFLDH
BO10461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bocksbeutel-PA | 351 | CG9424-PA | 1..351 | 1..351 | 1811 | 100 | Plus |
| bocksbeutel-PB | 399 | CG9424-PB | 1..349 | 1..349 | 1797 | 100 | Plus |
| Ote-PA | 424 | CG5581-PA | 1..283 | 1..249 | 173 | 25.1 | Plus |
