Clone BO10462 Report

Search the DGRC for BO10462

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptSry-delta-RA
Protein status:BO10462.pep: validated full length
Sequenced Size:1333

Clone Sequence Records

BO10462.3prime Sequence

924 bp (823 high quality bases) assembled on 2006-04-19

> BO10462.3prime
ATGGTCTAGAAAGCTTGCTTTCAAGACCACGTCGTGATCAAATTGCAAGT
GGTGTTCGAGCTCCTTCTTGTTCTCGAAGTTGGTATTGCAAATGAGACAG
AAGCCGCTGTTCTCATCGTTGTCGGACATGATGACGGTGACGGCCGCCTC
CGATTCGTCGACGTCCACATGCAGCTCCTCCACCACCTGCTGCTCGTCGG
CGGGCGCCTCCTCGCGAACCCCGTAAACGACGTCGCCCTCGTGGGTCTTC
ATGTGCATCTTGAGGGTGTAGCGCTCGGTGAAGGACTTGGGGCAGACGGA
GCAGTAGTGTCTTGGGCGGTTCTCCTTGTGAATGAGCGTGTGATGGTTGA
AGGTCTTGCGCGACTTGAACGACACATTGCAGATGCTGCATATGATGGGG
TTCTCCTCAGCCTCGTGGCGCAGCCGGTGGTTGTAGAGTAGGTTGTCCTG
GGAGAACCTCAGGCCGCACTTCTCGCACTGGTACTTCTTCTTGTCCCAGT
GCATGCGCATGTGGCGCAGGGTGTTCACCGGGCGCGAGAAGCTCTTGGGG
CAGTAGCGGCATTGCTTTTCCGTCTTGCCCTCGTGCAGATTCATGTGCAG
CTCCAAGTACTCCTCGTCGCGCCGGATCACCCCGCAGATGGGGCAGATGT
GGTTGGGCTGCTTGGAGTGCTCCTCGCTGATGTGCTTCTGCAGTTGATAC
CAGGAGTTGTACACCTTGCCGCAGGTAGTGCACTCCTGCTTGACGCGCTT
CTTCGTCGGCCTGTCCTCGCCATCGGAGGACTTGCCATACAGGGCCTCGG
AGTCGCCCACATCCACGTCCTCGCAGATGAACTCGTCGTCGTCGTCGTCG
TCCTCCTCCTCCTCCTCGTCCACGAACTCTCTCTTTATCTCCGTGTCGGA
CTCCTCCTGATCCTTGACCAGCTC

BO10462.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17958-PA 1302 Sry-delta-RA 394..1299 924..19 4530 100 Minus
CG7938-PA 1071 Sry-beta-RA 749..789 503..463 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1546 CG17958-RA 532..1437 924..19 4530 100 Minus
Sry-beta-RB 3300 CG7938-RB 746..883 600..463 300 81.2 Minus
Sry-beta-RA 1260 CG7938-RA 746..883 600..463 300 81.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30043872..30044777 924..19 4530 100 Minus
3R 32079331 3R 30040517..30040654 600..463 300 81.2 Minus
Blast to na_te.dros performed on 2015-02-06 17:03:22 has no hits.

BO10462.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:42 Download gff for BO10462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 394..1302 15..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:56 Download gff for BO10462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 394..1302 15..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:29:23 Download gff for BO10462.3prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 532..1443 12..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:24:57 Download gff for BO10462.3prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 532..1443 12..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:24:57 Download gff for BO10462.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30043872..30044783 12..924 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:29:23 Download gff for BO10462.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25869594..25870505 12..924 99   Minus

BO10462.5prime Sequence

925 bp (837 high quality bases) assembled on 2006-04-19

> BO10462.5prime
GAAGTTATCAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATC
TGAGCGACACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCC
AAGGTGCCGTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGC
CAACTGCATCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCC
CGCGCTGCTTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTG
ATGACCACCCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTC
CGAGTTCGAGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGG
AGATACCCCAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCC
CTGTTCGTGGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAA
GAGAGAGTTCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACG
AGTTCATCTGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGC
AAGTCCTCCGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGA
GTGCACTACCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGC
ACATCAGCGAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGC
GGGGTGATCCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCA
CGAGGGCAAGACGGAAAAGCAATGCCGCTACTGCCCCAAGAGCTTCTCGC
GCCCGGTGAACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAG
TACCAGTGCGAGAAGTGCGGCCTGAGGTTCTCCCAGGACAACCTACTCTA
CAACCACCGGCTGCGCCACGAGGCT

BO10462.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17958-PA 1302 Sry-delta-RA 1..909 17..925 4545 100 Plus
CG7938-PA 1071 Sry-beta-RA 749..789 831..871 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1546 CG17958-RA 139..1047 17..925 4545 100 Plus
Sry-beta-RB 3300 CG7938-RB 746..883 734..871 300 81.2 Plus
Sry-beta-RA 1260 CG7938-RA 746..883 734..871 300 81.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30043479..30044387 17..925 4545 100 Plus
3R 32079331 3R 30040517..30040654 734..871 300 81.2 Plus
Blast to na_te.dros performed on 2015-02-04 04:15:47 has no hits.

BO10462.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:43 Download gff for BO10462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:58 Download gff for BO10462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17958-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:59:46 Download gff for BO10462.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 131..1047 8..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:05 Download gff for BO10462.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 131..1047 8..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:05 Download gff for BO10462.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30043471..30044387 8..925 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:59:46 Download gff for BO10462.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25869193..25870109 8..925 99   Plus

BO10462.complete Sequence

1333 bp (1333 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631773

> BO10462.complete
GAAGTTATCAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATC
TGAGCGACACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCC
AAGGTGCCGTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGC
CAACTGCATCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCC
CGCGCTGCTTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTG
ATGACCACCCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTC
CGAGTTCGAGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGG
AGATACCCCAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCC
CTGTTCGTGGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAA
GAGAGAGTTCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACG
AGTTCATCTGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGC
AAGTCCTCCGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGA
GTGCACTACCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGC
ACATCAGCGAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGC
GGGGTGATCCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCA
CGAGGGCAAGACGGAAAAGCAATGCCGCTACTGCCCCAAGAGCTTCTCGC
GCCCGGTGAACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAG
TACCAGTGCGAGAAGTGCGGCCTGAGGTTCTCCCAGGACAACCTACTCTA
CAACCACCGGCTGCGCCACGAGGCTGAGGAGAACCCCATCATATGCAGCA
TCTGCAATGTGTCGTTCAAGTCGCGCAAGACCTTCAACCATCACACGCTC
ATTCACAAGGAGAACCGCCCAAGACACTACTGCTCCGTCTGCCCCAAGTC
CTTCACCGAGCGCTACACCCTCAAGATGCACATGAAGACCCACGAGGGCG
ACGTCGTTTACGGGGTTCGCGAGGAGGCGCCCGCCGACGAGCAGCAGGTG
GTGGAGGAGCTGCATGTGGACGTCGACGAATCGGAGGCGGCCGTCACCGT
CATCATGTCCGACAACGATGAGAACAGCGGCTTCTGTCTCATTTGCAATA
CCAACTTCGAGAACAAGAAGGAGCTCGAACACCACTTGCAATTTGATCAC
GACGTGGTCTTGAAAGCAAGCTTTCTAGACCAT

BO10462.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1302 CG17958-PA 1..1299 17..1315 6495 100 Plus
Sry-beta-RB 1071 CG7938-PB 652..789 734..871 300 81.2 Plus
Sry-beta-RA 1071 CG7938-PA 652..789 734..871 300 81.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-RA 1546 CG17958-RA 139..1437 17..1315 6495 100 Plus
Sry-beta-RB 3300 CG7938-RB 746..883 734..871 300 81.2 Plus
Sry-beta-RA 1260 CG7938-RA 746..883 734..871 300 81.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30043479..30044777 17..1315 6495 100 Plus
3R 32079331 3R 30040517..30040654 734..871 300 81.2 Plus
Blast to na_te.dros performed on 2014-11-26 22:13:12 has no hits.

BO10462.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:26 Download gff for BO10462.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 1..1302 17..1319 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:56 Download gff for BO10462.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 126..1438 8..1322 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:49 Download gff for BO10462.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 139..1437 17..1317 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:26 Download gff for BO10462.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 126..1438 8..1322 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:36 Download gff for BO10462.complete
Subject Subject Range Query Range Percent Splice Strand
Sry-delta-RA 139..1437 17..1317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:36 Download gff for BO10462.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30043479..30044777 17..1317 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:49 Download gff for BO10462.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25869201..25870499 17..1317 99   Plus

BO10462.pep Sequence

Translation from 16 to 1333

> BO10462.pep
MDTCFFCGAVDLSDTGSSSSMRYETLSAKVPSSQKTVSLVLTHLANCIQT
QLDLKPGARLCPRCFQELSDYDTIMVNLMTTQKRLTTQLKGALKSEFEVP
ESGEDILVEEVEIPQSDVETDADAEADALFVELVKDQEESDTEIKREFVD
EEEEEDDDDDDEFICEDVDVGDSEALYGKSSDGEDRPTKKRVKQECTTCG
KVYNSWYQLQKHISEEHSKQPNHICPICGVIRRDEEYLELHMNLHEGKTE
KQCRYCPKSFSRPVNTLRHMRMHWDKKKYQCEKCGLRFSQDNLLYNHRLR
HEAEENPIICSICNVSFKSRKTFNHHTLIHKENRPRHYCSVCPKSFTERY
TLKMHMKTHEGDVVYGVREEAPADEQQVVEELHVDVDESEAAVTVIMSDN
DENSGFCLICNTNFENKKELEHHLQFDHDVVLKASFLDH

BO10462.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-delta-PA 433 CG17958-PA 1..433 1..433 2326 100 Plus
Sry-beta-PB 356 CG7938-PB 28..338 30..360 597 35.9 Plus
Sry-beta-PA 356 CG7938-PA 28..338 30..360 597 35.9 Plus
CG15269-PA 587 CG15269-PA 302..491 164..361 327 36.2 Plus
CG7928-PA 457 CG7928-PA 130..420 86..360 293 28.6 Plus
CG15269-PA 587 CG15269-PA 293..488 218..426 202 27.4 Plus