Clone BO10463 Report

Search the DGRC for BO10463

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG6838-RA
Protein status:BO10463.pep: validated full length
Sequenced Size:1690

Clone Sequence Records

BO10463.3prime Sequence

930 bp (822 high quality bases) assembled on 2006-04-19

> BO10463.3prime
ATGGTCTAGAAAGCTTGCGTAACCGTACTTGTCTTGCCACGAGGTCATCA
CATCATTGGCCAGGTTGCTCAGACGGCCGGCCACTTTGTGTACACCCTGG
CGTACGCTTTCTTTTACGCTTTCCACATCCAAGTCCGGTGCACTGAAGTT
GACCGAAGATGCCCTATTGCCCCCAGTGCCACCAGGGGAGCCGTCCCCAA
AATAGTCCGACGAAGATATGGCTCGCGATCCCTGGAAGCGGTTCAAGCTT
GCGCTTACATCGGCCGAAGACTGTTCGCTGGCGAAGTACTGGTCGGAGCC
GAAACCCTTGGAGTTGCCGAACTTTTGCTGGGCGATCACGGGATCTGTGC
TCGTTCCTCCTTTGGTGTGGGTTTGCGATGAACCACTATTCTTCTTAACG
GGCGCCGACGTTTTGGGTTTGTCATAGTCATTGCTGCGAGAAAACATGGA
CGTGATATTGCTGTGGCTACCCCCAATAGGCTCAATTGTCTCGTAGCCCA
GCGCATCAAGTTCAAACTTATCAAGCTTGCTTGTTCCGCCAACTGAGCTC
TCCCGCTTTTCGCTAGATCCTCCTCCTCCTCCACCGCTGCTACTATTTCC
GTATAGGGAAAAGTCAGTGAAAAAATTCTCGCTTTCCAATAAGGAGAGTT
TTGCTTTAGGGGCGGCCGACTGCTGAATAGTCTCCATATCGCCGAGAGCG
GAGTGGGCCATGTCGGAGCCTCGCAGGTTGAAGCCCATGCCCAGCCGCTC
CATCTGTTTAGCCTTAGCAGGGTCCATGGTCTTAAGCTTGGCCTCCTCGC
GGGTCTTCTGCATGGAGAGTTCTTGGTATGCCAATCGCATGCTGGGCACC
GTCTCTAGTTCGTCCTCGGCCGTCTGTGGCTTGACCACAGGTGCTGCTGC
AGCTGATGTCTTCATCTCGTTAGCCGCGTT

BO10463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6838-PA 1659 CG6838-RA 745..1656 930..19 4510 99.7 Minus
CG6838-PB 1659 CG6838-RB 745..1656 930..19 4510 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-RG 2298 CG6838-RG 848..1759 930..19 4530 99.8 Minus
ArfGAP3-RF 2193 CG6838-RF 743..1654 930..19 4530 99.8 Minus
ArfGAP3-RE 2190 CG6838-RE 740..1651 930..19 4530 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22715155..22715923 162..930 3830 99.9 Plus
3L 28110227 3L 22714947..22715090 19..162 705 99.3 Plus
Blast to na_te.dros performed on 2015-02-11 11:11:31 has no hits.

BO10463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:45 Download gff for BO10463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6838-PB 745..1659 16..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:54:59 Download gff for BO10463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6838-PB 745..1659 16..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:53:02 Download gff for BO10463.3prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RE 740..1651 19..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:15 Download gff for BO10463.3prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RE 740..1651 19..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:15 Download gff for BO10463.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22714947..22715089 19..161 99 <- Plus
3L 22715155..22715923 162..930 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:53:02 Download gff for BO10463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22708047..22708189 19..161 99 <- Plus
arm_3L 22708255..22709023 162..930 99   Plus

BO10463.5prime Sequence

898 bp (718 high quality bases) assembled on 2006-04-19

> BO10463.5prime
GAAGTTATCAGTCGACATGGCCAGTCCAGCAGCAGGACCCTCCAAGCAGG
AGATCGAGTCGGTCTTCAGTCGCCTGCGCGCCCAGCCAGCTAACAAATCC
TGCTTCGACTGCGCTGCCAAGGCTCCCACCTGGTCCTCCGTTACCTATGG
CATCTTCATTTGCATCGACTGTTCTGCCGTGCACCGCAACTTGGGCGTGC
ATCTGACCTTCGTGCGCAGCACCAACCTGGACACCAACTGGACCTGGCTC
CAGCTCCGCCAGATGCAACTGGGCGGCAACGCGAACGCCGCGCAATTCTT
CCGCGCCCACAACTGCAGCACCACCGACGCCCAGGTCAAGTACAACTCGC
GGGCGGCCCAGCTTTATAGGGACAAGCTGTGTGCCCAGGCCCAGCAGGCC
ATGAAGACGCACGGCACAAAGCTGCATTTGGAACAGACGGACAAGAGCGA
GGGCAACGAAGCCGCTAGGGAGGAGGACTTCTTTGCCCAGTGTGACAATG
AGGTGGACTTCAATGTCCAGAACAACAATGTCAGTAAGGATCCAAACCCA
CCCACCGTTGCTCCGGTCATCAGCGTTGAAACGCAACAAGGTGGCGCCCC
CAGCGTGAATCTGCTTAATTCCGTGGTGCCGGCAGCAGTGCCGTCGTCCA
TAGGCGCGCGAAAGGTGCAGCCGAAGAAGGGTGGACTGGGTGCTCGCAAA
GTGGGCGGTCTTGGAGCCACGAAAGTTAAGACTAACTTCGCAGACATCGA
GGCCCGTGCCAACGCGGCTAACGAGATGAAGACATCAGCTGCAGCAGCAC
CTGTGGTCAAGCCACAGACGGGCGAGGACGAACTAGAGACGGTGGCCAGC
ATGCGATTGGCATACCAAGAACTCTCCATGCAGAAGACCCGCGAGGAG

BO10463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6838-PA 1659 CG6838-RA 1..882 17..898 4385 99.8 Plus
CG6838-PB 1659 CG6838-RB 1..882 17..898 4385 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-RC 2580 CG6838-RC 382..1267 13..898 4415 99.9 Plus
ArfGAP3-RB 2307 CG6838-RB 109..994 13..898 4415 99.9 Plus
ArfGAP3-RA 2689 CG6838-RA 396..1281 13..898 4415 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22716569..22716892 421..98 1620 100 Minus
3L 28110227 3L 22715786..22715998 898..686 1050 99.5 Minus
3L 28110227 3L 22716049..22716204 692..537 750 98.7 Minus
3L 28110227 3L 22716297..22716416 539..420 600 100 Minus
3L 28110227 3L 22716971..22717055 97..13 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:49:45 has no hits.

BO10463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:46 Download gff for BO10463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6838-PB 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:01 Download gff for BO10463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6838-PB 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:00 Download gff for BO10463.5prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RA 392..1281 9..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:41 Download gff for BO10463.5prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RA 392..1281 9..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:41 Download gff for BO10463.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22715786..22715998 686..898 99 <- Minus
3L 22716056..22716202 539..685 100 <- Minus
3L 22716298..22716414 422..538 100 <- Minus
3L 22716569..22716892 98..421 100 <- Minus
3L 22716971..22717059 9..97 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:00 Download gff for BO10463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22708886..22709098 686..898 99 <- Minus
arm_3L 22709156..22709302 539..685 100 <- Minus
arm_3L 22709398..22709514 422..538 100 <- Minus
arm_3L 22709669..22709992 98..421 100 <- Minus
arm_3L 22710071..22710159 9..97 97   Minus

BO10463.complete Sequence

1690 bp (1690 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631774

> BO10463.complete
GAAGTTATCAGTCGACATGGCCAGTCCAGCAGCAGGACCCTCCAAGCAGG
AGATCGAGTCGGTCTTCAGTCGCCTGCGCGCCCAGCCAGCTAACAAATCC
TGCTTCGACTGCGCTGCCAAGGCTCCCACCTGGTCCTCCGTTACCTATGG
CATCTTCATTTGCATCGACTGTTCTGCCGTGCACCGCAACTTGGGCGTGC
ATCTGACCTTCGTGCGCAGCACCAACCTGGACACCAACTGGACCTGGCTC
CAGCTCCGCCAGATGCAACTGGGCGGCAACGCGAACGCCGCGCAATTCTT
CCGCGCCCACAACTGCAGCACCACCGACGCCCAGGTCAAGTACAACTCGC
GGGCGGCCCAGCTTTATAGGGACAAGCTGTGTGCCCAGGCCCAGCAGGCC
ATGAAGACGCACGGCACAAAGCTGCATTTGGAACAGACGGACAAGAGCGA
GGGCAACGAAGCCGCTAGGGAGGAGGACTTCTTTGCCCAGTGTGACAATG
AGGTGGACTTCAATGTCCAGAACAACAATGTCAGTAAGGATCCAAACCCA
CCCACCGTTGCTCCGGTCATCAGCGTTGAAACGCAACAAGGTGGCGCCCC
CAGCGTGAATCTGCTTAATTCCGTGGTGCCGGCAGCAGTGCCGTCGTCCA
TAGGCGCGCGAAAGGTGCAGCCGAAGAAGGGTGGACTGGGTGCTCGCAAA
GTGGGCGGTCTTGGAGCCACGAAAGTTAAGACTAACTTCGCAGACATCGA
GGCCCGTGCCAACGCGGCTAACGAGATGAAGACATCAGCTGCAGCAGCAC
CTGTGGTCAAGCCACAGACGGCCGAGGACGAACTAGAGACGGTGGCCAGC
ATGCGATTGGCATACCAAGAACTCTCCATGCAGAAGACCCGCGAGGAGGC
CAAGCTTAAGACCATGGACCCTGCTAAGGCTAAACAGATGGAGCGGCTGG
GCATGGGCTTCAACCTGCGAGGCTCCGACATGGCCCACTCCGCTCTCGGC
GATATGGAGACTATTCAGCAGTCGGCCGCCCCTAAAGCAAAACTCTCCTT
ATTGGAAAGCGAGAATTTTTTCACTGACTTTTCCCTATACGGAAATAGTA
GCAGCGGTGGAGGAGGAGGAGGATCTAGCGAAAAGCGGGAGAGCTCAGTT
GGCGGAACAAGCAAGCTTGATAAGTTTGAACTTGATGCGCTGGGCTACGA
GACAATTGAGCCTATTGGGGGTAGCCACAGCAATATCACGTCCATGTTTT
CTCGCAGCAATGACTATGACAAACCCAAAACGTCGGCGCCCGTTAAGAAG
AATAGTGGTTCATCGCAAACCCACACCAAAGGAGGAACGAGCACAGATCC
CGTGATCGCCCAGCAAAAGTTCGGCAACTCCAAGGGTTTCGGCTCCGACC
AGTACTTCGCCAGCGAACAGTCTTCGGCCGATGTAAGCGCAAGCTTGAAC
CGCTTCCAGGGATCGCGAGCCATATCTTCGTCGGACTATTTTGGGGACGG
CTCCCCTGGTGGCACTGGGGGCAATAGGGCATCTTCGGTCAACTTCAGTG
CACCGGACTTGGATGTGGAAAGCGTAAAAGAAAGCGTACGCCAGGGTGTA
CACAAAGTGGCCGGCCGTCTGAGCAACCTGGCCAATGATGTGATGACCTC
GTGGCAAGACAAGTACGGTTACGCAAGCTTTCTAGACCAT

BO10463.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-RC 1659 CG6838-PC 1..1656 17..1672 8265 99.9 Plus
ArfGAP3-RB 1659 CG6838-PB 1..1656 17..1672 8265 99.9 Plus
ArfGAP3-RA 1659 CG6838-PA 1..1656 17..1672 8265 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-RC 2580 CG6838-RC 382..2041 13..1672 8285 99.9 Plus
ArfGAP3-RB 2307 CG6838-RB 109..1768 13..1672 8285 99.9 Plus
ArfGAP3-RA 2689 CG6838-RA 396..2055 13..1672 8285 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22715155..22715998 1529..686 4220 100 Minus
3L 28110227 3L 22716569..22716892 421..98 1620 100 Minus
3L 28110227 3L 22716049..22716204 692..537 750 98.7 Minus
3L 28110227 3L 22714947..22715090 1672..1529 705 99.3 Minus
3L 28110227 3L 22716297..22716416 539..420 600 100 Minus
3L 28110227 3L 22716971..22717055 97..13 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:10:50 has no hits.

BO10463.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:36 Download gff for BO10463.complete
Subject Subject Range Query Range Percent Splice Strand
CG6838-RC 1..1659 17..1675 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:03 Download gff for BO10463.complete
Subject Subject Range Query Range Percent Splice Strand
CG6838-RC 378..2041 9..1672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:48 Download gff for BO10463.complete
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RA 400..2055 17..1674 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:37 Download gff for BO10463.complete
Subject Subject Range Query Range Percent Splice Strand
CG6838-RC 378..2041 9..1672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:13 Download gff for BO10463.complete
Subject Subject Range Query Range Percent Splice Strand
ArfGAP3-RA 400..2055 17..1674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:13 Download gff for BO10463.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22714944..22715089 1530..1674 97 <- Minus
3L 22715155..22715998 686..1529 100 <- Minus
3L 22716056..22716202 539..685 100 <- Minus
3L 22716298..22716414 422..538 100 <- Minus
3L 22716569..22716892 98..421 100 <- Minus
3L 22716971..22717051 17..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:48 Download gff for BO10463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22710071..22710151 17..97 100   Minus
arm_3L 22709669..22709992 98..421 100 <- Minus
arm_3L 22708044..22708189 1530..1674 97 <- Minus
arm_3L 22708255..22709098 686..1529 100 <- Minus
arm_3L 22709156..22709302 539..685 100 <- Minus
arm_3L 22709398..22709514 422..538 100 <- Minus

BO10463.pep Sequence

Translation from 16 to 1690

> BO10463.pep
MASPAAGPSKQEIESVFSRLRAQPANKSCFDCAAKAPTWSSVTYGIFICI
DCSAVHRNLGVHLTFVRSTNLDTNWTWLQLRQMQLGGNANAAQFFRAHNC
STTDAQVKYNSRAAQLYRDKLCAQAQQAMKTHGTKLHLEQTDKSEGNEAA
REEDFFAQCDNEVDFNVQNNNVSKDPNPPTVAPVISVETQQGGAPSVNLL
NSVVPAAVPSSIGARKVQPKKGGLGARKVGGLGATKVKTNFADIEARANA
ANEMKTSAAAAPVVKPQTAEDELETVASMRLAYQELSMQKTREEAKLKTM
DPAKAKQMERLGMGFNLRGSDMAHSALGDMETIQQSAAPKAKLSLLESEN
FFTDFSLYGNSSSGGGGGGSSEKRESSVGGTSKLDKFELDALGYETIEPI
GGSHSNITSMFSRSNDYDKPKTSAPVKKNSGSSQTHTKGGTSTDPVIAQQ
KFGNSKGFGSDQYFASEQSSADVSASLNRFQGSRAISSSDYFGDGSPGGT
GGNRASSVNFSAPDLDVESVKESVRQGVHKVAGRLSNLANDVMTSWQDKY
GYASFLDH

BO10463.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP3-PC 552 CG6838-PC 1..552 1..552 2833 100 Plus
ArfGAP3-PB 552 CG6838-PB 1..552 1..552 2833 100 Plus
ArfGAP3-PA 552 CG6838-PA 1..552 1..552 2833 100 Plus
ArfGAP3-PH 553 CG6838-PH 1..553 1..552 2821 99.8 Plus
ArfGAP3-PG 549 CG6838-PG 1..549 1..552 2806 99.5 Plus