Clone BO10466 Report

Search the DGRC for BO10466

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptHerp-RB
Protein status:BO10466.pep: validated full length
Sequenced Size:808

Clone Sequence Records

BO10466.3prime Sequence

806 bp (805 high quality bases) assembled on 2006-04-19

> BO10466.3prime
ATGGTCTAGAAAGCTTGCGAGCGCCGGCGCCTCGGGCAGCAGCGAGGTGA
AGAACGTGATGACAAAGGTGCGCACAACGGAAATCACAGAATTATTGGCA
TTTGGTGGTTCCACAGCTTCCGCGGAAACGTCAGTCGGTTCTGGATTAGC
AGCGGATGCTGGAGCAACGGGAGCCCCAGCCGGAGGTGCATCGATTGCAT
CTTGTTCACCAGCAGCAGCAGGTCCAGCCGCTGGCACTGCACCAGGCTCA
TTGGCCGCCTGGGGATCGTTGTTCTCCCGCTGCACGGCCGCATCCATCAT
GCGCTGAATTTGCTGCACTGCAGCAAAGGCGGCCGCATCGCCAGCATTAT
TGTTACGATTTATGTTGTTATTGTTCCGCTCGCGGCGACGTCGAAGGACA
CCAATGTGATATAGATAAATCGCACCCGCGATGAGCACCACCAGTAAACA
ACGCAGCGCTGAGGAGTTAAAGTACAGGACAGTCACAAAAATGGCCAATC
GCGTAAAGCTAAAGAAACTATCCAGCCAGTCGTGCATTTCCGGTTCCTCC
TGAATGTTGGGAAAATTTCTGTTCTGCGGCGCTCCATTAATCTGAGGATC
AGCAGGTACCTGTGCCGCTGGGGCAGCAGCTGCTCCTGCCACTTGTTGTA
CCTCCCCGAAGTTTCGCCCAGCAATCAGTGGGACTGAGGGCAACAGGGGT
TGAGTCGGTGGCGGCAAGCCAGATTGGTTCGAACCGGGCAACGTAGAACG
TAGAGTCAACTGCTGCATGTACTGCGCGTAAGCCTGCTGCATGTCGACTG
ATAACT

BO10466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14536-PA 1398 CG14536-RA 622..1395 792..19 3870 100 Minus
CG14536-PB 777 CG14536-RB 1..774 792..19 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 1168..1941 792..19 3870 100 Minus
Herp-RA 2117 CG14536-RA 957..1730 792..19 3870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796933..7797326 19..412 1970 100 Plus
2L 23513712 2L 7797397..7797733 413..749 1685 100 Plus
2L 23513712 2L 7798163..7798206 749..792 220 100 Plus
Blast to na_te.dros performed 2015-02-10 19:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 581..722 282..141 124 56.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 148..220 122 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 148..250 112 58.3 Plus

BO10466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:50 Download gff for BO10466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PB 1..777 18..792 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:07 Download gff for BO10466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PB 1..777 18..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:15 Download gff for BO10466.3prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1730 19..792 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:46 Download gff for BO10466.3prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1730 19..792 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:46 Download gff for BO10466.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7797397..7797732 413..748 100 <- Plus
2L 7798163..7798206 749..792 100   Plus
2L 7796933..7797326 19..412 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:15 Download gff for BO10466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796933..7797326 19..412 100 <- Plus
arm_2L 7797397..7797732 413..748 100 <- Plus
arm_2L 7798163..7798206 749..792 100   Plus

BO10466.5prime Sequence

806 bp (805 high quality bases) assembled on 2006-04-19

> BO10466.5prime
GAAGTTATCAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGT
TGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCA
CCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTT
CGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGG
TACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCC
AACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAG
CTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAG
CGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATAT
CACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAA
TCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAA
TTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAG
GCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGG
TGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAG
CATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAA
CCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCAT
CACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCGCAAGCTTTC
TAGACC

BO10466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14536-PA 1398 CG14536-RA 622..1395 17..790 3870 100 Plus
CG14536-PB 777 CG14536-RB 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 1168..1941 17..790 3870 100 Plus
Herp-RA 2117 CG14536-RA 957..1730 17..790 3870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796933..7797326 790..397 1970 100 Minus
2L 23513712 2L 7797397..7797733 396..60 1685 100 Minus
2L 23513712 2L 7798163..7798206 60..17 220 100 Minus
Blast to na_te.dros performed 2015-02-10 03:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 581..722 527..668 124 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 661..589 122 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 661..559 112 58.3 Minus

BO10466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:52 Download gff for BO10466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PB 1..777 17..791 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:09 Download gff for BO10466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PB 1..777 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:22 Download gff for BO10466.5prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1730 17..790 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:10 Download gff for BO10466.5prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1730 17..790 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:10 Download gff for BO10466.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7796933..7797326 397..790 100 <- Minus
2L 7797397..7797732 61..396 100 <- Minus
2L 7798163..7798206 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:22 Download gff for BO10466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796933..7797326 397..790 100 <- Minus
arm_2L 7797397..7797732 61..396 100 <- Minus
arm_2L 7798163..7798206 17..60 100   Minus

BO10466.complete Sequence

808 bp (808 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631776

> BO10466.complete
GAAGTTATCAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGT
TGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCA
CCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTT
CGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGG
TACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCC
AACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAG
CTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAG
CGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATAT
CACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAA
TCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAA
TTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAG
GCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGG
TGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAG
CATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAA
CCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCAT
CACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCGCAAGCTTTC
TAGACCAT

BO10466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 1398 CG14536-PC 622..1395 17..790 3870 100 Plus
Herp-RA 1398 CG14536-PA 622..1395 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 1168..1941 17..790 3870 100 Plus
Herp-RA 2117 CG14536-RA 957..1730 17..790 3870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796933..7797326 790..397 1970 100 Minus
2L 23513712 2L 7797397..7797733 396..60 1685 100 Minus
2L 23513712 2L 7798163..7798206 60..17 220 100 Minus
Blast to na_te.dros performed 2014-11-27 19:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 581..722 527..668 124 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 661..589 122 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 661..559 112 58.3 Minus

BO10466.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:27 Download gff for BO10466.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RB 1..777 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:57 Download gff for BO10466.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RB 892..1665 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:10 Download gff for BO10466.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1730 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:27 Download gff for BO10466.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RB 892..1665 17..790 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:08 Download gff for BO10466.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 957..1730 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:08 Download gff for BO10466.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796931..7797326 397..792 99 <- Minus
2L 7797397..7797732 61..396 100 <- Minus
2L 7798163..7798206 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:10 Download gff for BO10466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796931..7797326 397..792 99 <- Minus
arm_2L 7797397..7797732 61..396 100 <- Minus
arm_2L 7798163..7798206 17..60 100   Minus

BO10466.pep Sequence

Translation from 16 to 808

> BO10466.pep
MQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGRNFGEVQQ
VAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSFFSFTRLA
IFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNNINRNNNA
GDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAI
DAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTFVITFFTS
LLPEAPALASFLDH

BO10466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-PC 465 CG14536-PC 208..465 1..258 1317 100 Plus
Herp-PA 465 CG14536-PA 208..465 1..258 1317 100 Plus