Clone Sequence Records
BO10466.3prime Sequence
806 bp (805 high quality bases) assembled on 2006-04-19
> BO10466.3prime
ATGGTCTAGAAAGCTTGCGAGCGCCGGCGCCTCGGGCAGCAGCGAGGTGA
AGAACGTGATGACAAAGGTGCGCACAACGGAAATCACAGAATTATTGGCA
TTTGGTGGTTCCACAGCTTCCGCGGAAACGTCAGTCGGTTCTGGATTAGC
AGCGGATGCTGGAGCAACGGGAGCCCCAGCCGGAGGTGCATCGATTGCAT
CTTGTTCACCAGCAGCAGCAGGTCCAGCCGCTGGCACTGCACCAGGCTCA
TTGGCCGCCTGGGGATCGTTGTTCTCCCGCTGCACGGCCGCATCCATCAT
GCGCTGAATTTGCTGCACTGCAGCAAAGGCGGCCGCATCGCCAGCATTAT
TGTTACGATTTATGTTGTTATTGTTCCGCTCGCGGCGACGTCGAAGGACA
CCAATGTGATATAGATAAATCGCACCCGCGATGAGCACCACCAGTAAACA
ACGCAGCGCTGAGGAGTTAAAGTACAGGACAGTCACAAAAATGGCCAATC
GCGTAAAGCTAAAGAAACTATCCAGCCAGTCGTGCATTTCCGGTTCCTCC
TGAATGTTGGGAAAATTTCTGTTCTGCGGCGCTCCATTAATCTGAGGATC
AGCAGGTACCTGTGCCGCTGGGGCAGCAGCTGCTCCTGCCACTTGTTGTA
CCTCCCCGAAGTTTCGCCCAGCAATCAGTGGGACTGAGGGCAACAGGGGT
TGAGTCGGTGGCGGCAAGCCAGATTGGTTCGAACCGGGCAACGTAGAACG
TAGAGTCAACTGCTGCATGTACTGCGCGTAAGCCTGCTGCATGTCGACTG
ATAACT
BO10466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14536-PA | 1398 | CG14536-RA | 622..1395 | 792..19 | 3870 | 100 | Minus |
CG14536-PB | 777 | CG14536-RB | 1..774 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 1168..1941 | 792..19 | 3870 | 100 | Minus |
Herp-RA | 2117 | CG14536-RA | 957..1730 | 792..19 | 3870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7796933..7797326 | 19..412 | 1970 | 100 | Plus |
2L | 23513712 | 2L | 7797397..7797733 | 413..749 | 1685 | 100 | Plus |
2L | 23513712 | 2L | 7798163..7798206 | 749..792 | 220 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 19:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 581..722 | 282..141 | 124 | 56.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 148..220 | 122 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 148..250 | 112 | 58.3 | Plus |
BO10466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:50 Download gff for
BO10466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 1..777 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:07 Download gff for
BO10466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 1..777 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:15 Download gff for
BO10466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1730 | 19..792 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:46 Download gff for
BO10466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1730 | 19..792 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:46 Download gff for
BO10466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7797397..7797732 | 413..748 | 100 | <- | Plus |
2L | 7798163..7798206 | 749..792 | 100 | | Plus |
2L | 7796933..7797326 | 19..412 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:15 Download gff for
BO10466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7796933..7797326 | 19..412 | 100 | <- | Plus |
arm_2L | 7797397..7797732 | 413..748 | 100 | <- | Plus |
arm_2L | 7798163..7798206 | 749..792 | 100 | | Plus |
BO10466.5prime Sequence
806 bp (805 high quality bases) assembled on 2006-04-19
> BO10466.5prime
GAAGTTATCAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGT
TGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCA
CCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTT
CGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGG
TACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCC
AACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAG
CTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAG
CGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATAT
CACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAA
TCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAA
TTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAG
GCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGG
TGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAG
CATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAA
CCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCAT
CACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCGCAAGCTTTC
TAGACC
BO10466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14536-PA | 1398 | CG14536-RA | 622..1395 | 17..790 | 3870 | 100 | Plus |
CG14536-PB | 777 | CG14536-RB | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 1168..1941 | 17..790 | 3870 | 100 | Plus |
Herp-RA | 2117 | CG14536-RA | 957..1730 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7796933..7797326 | 790..397 | 1970 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 396..60 | 1685 | 100 | Minus |
2L | 23513712 | 2L | 7798163..7798206 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 03:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 581..722 | 527..668 | 124 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 661..589 | 122 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 661..559 | 112 | 58.3 | Minus |
BO10466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:52 Download gff for
BO10466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:09 Download gff for
BO10466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:22 Download gff for
BO10466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1730 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:10 Download gff for
BO10466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1730 | 17..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:10 Download gff for
BO10466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7796933..7797326 | 397..790 | 100 | <- | Minus |
2L | 7797397..7797732 | 61..396 | 100 | <- | Minus |
2L | 7798163..7798206 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:22 Download gff for
BO10466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7796933..7797326 | 397..790 | 100 | <- | Minus |
arm_2L | 7797397..7797732 | 61..396 | 100 | <- | Minus |
arm_2L | 7798163..7798206 | 17..60 | 100 | | Minus |
BO10466.complete Sequence
808 bp (808 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631776
> BO10466.complete
GAAGTTATCAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGT
TGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCA
CCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTT
CGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGG
TACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCC
AACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAG
CTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAG
CGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATAT
CACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAA
TCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAA
TTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAG
GCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGG
TGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAG
CATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAA
CCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCAT
CACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCGCAAGCTTTC
TAGACCAT
BO10466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 1398 | CG14536-PC | 622..1395 | 17..790 | 3870 | 100 | Plus |
Herp-RA | 1398 | CG14536-PA | 622..1395 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 1168..1941 | 17..790 | 3870 | 100 | Plus |
Herp-RA | 2117 | CG14536-RA | 957..1730 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7796933..7797326 | 790..397 | 1970 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 396..60 | 1685 | 100 | Minus |
2L | 23513712 | 2L | 7798163..7798206 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 581..722 | 527..668 | 124 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 661..589 | 122 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 661..559 | 112 | 58.3 | Minus |
BO10466.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:27 Download gff for
BO10466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RB | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:57 Download gff for
BO10466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RB | 892..1665 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:10 Download gff for
BO10466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1730 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:27 Download gff for
BO10466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RB | 892..1665 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:08 Download gff for
BO10466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 957..1730 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:08 Download gff for
BO10466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7796931..7797326 | 397..792 | 99 | <- | Minus |
2L | 7797397..7797732 | 61..396 | 100 | <- | Minus |
2L | 7798163..7798206 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:10 Download gff for
BO10466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7796931..7797326 | 397..792 | 99 | <- | Minus |
arm_2L | 7797397..7797732 | 61..396 | 100 | <- | Minus |
arm_2L | 7798163..7798206 | 17..60 | 100 | | Minus |
BO10466.pep Sequence
Translation from 16 to 808
> BO10466.pep
MQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGRNFGEVQQ
VAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSFFSFTRLA
IFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNNINRNNNA
GDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAAAGEQDAI
DAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTFVITFFTS
LLPEAPALASFLDH
BO10466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-PC | 465 | CG14536-PC | 208..465 | 1..258 | 1317 | 100 | Plus |
Herp-PA | 465 | CG14536-PA | 208..465 | 1..258 | 1317 | 100 | Plus |