Clone BO10468 Report

Search the DGRC for BO10468

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptveil-RA
Protein status:BO10468.pep: validated full length
Sequenced Size:1831

Clone Sequence Records

BO10468.3prime Sequence

948 bp (765 high quality bases) assembled on 2006-04-19

> BO10468.3prime
ATGGTCTAGAAAGCTTGCGATGAATCTAGTTAGCAGGGAAGAGAGCAGAA
GCAAGGAGATGGAGGCCACAATACCAGACGCCGATCCGGTGTCAGCCTTC
TCGTGAATCACAATTCGTTCCTCGATCTCGGGATACACGAAATGGCGCTG
CTTCAGGTACTCCATGGTAGCATTCAGATCGTTTCGCTGCATGCTCTCGG
TGAAGGGATCCGACTCCTCGATCAGAGTGTAGCCATCGCCGCCTTCCAGC
AGGAACTGGGGCACGATCACTTGGTACAGGGCCGTCTCATTGATGCTCTT
GTACGTGGGCACGGCGCAGCTGGCGCATAGGGCCTGTGCGGAAACCACTC
GCTTGCCCTGCTCATTGTTGTAGTTGTACACCACACGCAGTCCGGACATC
TGCAGGAATCCACCATTGGAGTCCTGCAACCTCACAGACGCGGAGTGTTC
CAGGGCAGCCAGAAGGGTGCTTCCGAGAATCCTTGTCACGTACAGATTAT
TCTCGAACGGAAGAACGGCTAAGAGGGTGGCGCCATTGATGACTCCATCA
TCCTTCTTATCGACGGAGCCACGGATTCCTCCTCCCTGCATAAAAGCAAT
CGCAGTATCTGTCCAGAATTCGCCGCCCTTGTTTTCCAACACGCGACTAT
AGATCATGGCATCTGTCACCAAGTTGCCAAGGTTGCACTCCCTCATGCGG
CAGATGTTGCCGCCCTCGAGAAACACCTTAGTGTAACCCAGAACCGTGTT
CTCCAGCTCGTCCAGCTTGGGGCGGTATTCGTCTAGCAAATCCAGGAGAT
CCTGCTCCTGAGCTACAGAGGCATTCAGCAAAATGGGAGCGCCATCAAAC
TCGATCAGATTTCCCTCGGCATCAAACTGAACATGAATCTTTCCGAGATA
CTTGGTATACGCGTATGCCCTGAACACTGGTACCTTCTTGCGCTCGCC

BO10468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4827-PA 1800 CG4827-RA 897..1797 919..19 4505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
veil-RB 2220 CG4827-RB 1106..2036 948..19 4585 99.7 Minus
veil-RA 2021 CG4827-RA 907..1837 948..19 4585 99.7 Minus
CG43110-RB 8272 CG43110-RB 3903..4464 19..580 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17481373..17481934 580..19 2810 100 Minus
2R 25286936 2R 17481013..17481314 879..578 1510 100 Minus
2R 25286936 2R 17480881..17480945 941..877 265 93.8 Minus
2R 25286936 2R 17492277..17492390 691..578 195 78.1 Minus
Blast to na_te.dros performed on 2015-02-10 22:08:26 has no hits.

BO10468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:54 Download gff for BO10468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4827-PA 867..1800 18..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:12 Download gff for BO10468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4827-PA 867..1800 18..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:41 Download gff for BO10468.3prime
Subject Subject Range Query Range Percent Splice Strand
veil-RA 907..1837 19..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:16 Download gff for BO10468.3prime
Subject Subject Range Query Range Percent Splice Strand
veil-RA 907..1837 19..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:16 Download gff for BO10468.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17480873..17480945 877..948 95 -> Minus
2R 17481016..17481313 579..876 100 -> Minus
2R 17481375..17481934 19..578 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:41 Download gff for BO10468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13368378..13368450 877..948 95 -> Minus
arm_2R 13368521..13368818 579..876 100 -> Minus
arm_2R 13368880..13369439 19..578 100   Minus

BO10468.5prime Sequence

905 bp (827 high quality bases) assembled on 2006-04-19

> BO10468.5prime
GAAGTTATCAGTCGACATGTTACCTGCCCGTGGTCTCCTTATCGGATCAT
GCTGCCTACTGGCTCTACTGATTCATCCTGTGCAGCCGAATCCCATTGCA
CCCCGGGCGGAAGTTGCCGCCGAGTTCATCATTCTGCACAACAATGACAT
GCACGCCCGATTCGAGCAGACGAGTGTGACCAGTGGCACCTGCTCCAAGG
AGGAGGCCAATACGGATCAGTGCTACGGAGGATTCGCCAGGGTGGCATAC
GAGGTGCGAAAGTATCGCAAGGAGGCGGAGGAGGGTGGAACTCCAGTGTT
TTATCTCAATGCAGGTGACACCTATACCGGAACTGCTTGGTTCACCGTCT
ATAAGGACAAGATCGCCAGTGCTTTCCTCAACAAGCTATCGCCAGATGCT
ATTTCTCTGGGCAACCATGAGTTTGATCAGAATGTTGAGGGTTTGGTGCC
CTTCCTAAATGCCGTGGAATTCCCTGTTTTGGCCTGTAATCTGAACCTCA
CCGATGTTCCGGAAATGGCGGCTGCCAAGCAGCTGGCCAACTCGACGATC
CTCGAGAGAAATGGGGTGAAGGTTGGCGTTATCGGTTACCTTACGCCCGA
TACCAAGGTGCTTGCCTTTCGGAACAAAGTGGAGTACGAGGAGGAAATCG
TGTCCATCAATGCGGAGGCCGCAAAGCTAAAGGCTCAAGGCATCAATATC
ATCATCGCTTTGGGTCACTCTGGATACCAAAAGGATCAGGAGATAGCCAT
GAACTGCCCGGAGGTGGACATAGTCATTGGTGGCCATTCGCACACATTCT
TAGATGCCAATCAGCCGGTGGCCGATCCCACGGACTCTGATCCGGAAGCG
GTTCGAGGTCCCTATCCACCACAGTGGTGCAGGCGAGCGGAAGAAGGTAC
CAGTG

BO10468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4827-PA 1800 CG4827-RA 1..851 17..867 4230 99.8 Plus
CG30104-PB 1758 CG30104-RB 703..759 731..787 160 91.2 Plus
CG30104-PA 1758 CG30104-RA 703..759 731..787 160 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
veil-RB 2220 CG4827-RB 240..1130 17..905 4390 99.7 Plus
veil-RA 2021 CG4827-RA 41..931 17..905 4390 99.7 Plus
CG43110-RB 8272 CG43110-RB 5249..5505 660..404 1285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17480332..17480588 404..660 1285 100 Plus
2R 25286936 2R 17479824..17480060 17..253 1185 100 Plus
2R 25286936 2R 17480651..17480897 661..905 1120 98.8 Plus
2R 25286936 2R 17480117..17480267 253..403 755 100 Plus
2R 25286936 2R 17491751..17491873 673..795 285 82.1 Plus
2R 25286936 2R 17491022..17491164 111..253 280 79.7 Plus
2R 25286936 2R 17491219..17491346 257..384 235 78.9 Plus
Blast to na_te.dros performed on 2015-02-12 11:05:45 has no hits.

BO10468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:55 Download gff for BO10468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4827-PA 1..891 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:14 Download gff for BO10468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4827-PA 1..891 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:27 Download gff for BO10468.5prime
Subject Subject Range Query Range Percent Splice Strand
veil-RA 32..931 7..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:13 Download gff for BO10468.5prime
Subject Subject Range Query Range Percent Splice Strand
veil-RA 32..931 7..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:13 Download gff for BO10468.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17479817..17480059 9..252 98 -> Plus
2R 17480117..17480267 253..403 100 -> Plus
2R 17480332..17480588 404..660 100 -> Plus
2R 17480651..17480897 661..905 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:27 Download gff for BO10468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13367322..13367564 9..252 98 -> Plus
arm_2R 13367622..13367772 253..403 100 -> Plus
arm_2R 13367837..13368093 404..660 100 -> Plus
arm_2R 13368156..13368402 661..905 98   Plus

BO10468.complete Sequence

1831 bp (1831 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631777

> BO10468.complete
GAAGTTATCAGTCGACATGTTACCTGCCCGTGGTCTCCTTATCGGATCAT
GCTGCCTACTGGCTCTACTGATTCATCCTGTGCAGCCGAATCCCATTGCA
CCCCGGGCGGAAGTTGCCGCCGAGTTCATCATTCTGCACAACAATGACAT
GCACGCCCGATTCGAGCAGACGAGTGTGACCAGTGGCACCTGCTCCAAGG
AGGAGGCCAATACGGATCAGTGCTACGGAGGATTCGCCAGGGTGGCATAC
GAGGTGCGAAAGTATCGCAAGGAGGCGGAGGAGGGTGGAACTCCAGTGTT
TTATCTCAATGCAGGTGACACCTATACCGGAACTGCTTGGTTCACCGTCT
ATAAGGACAAGATCGCCAGTGCTTTCCTCAACAAGCTATCGCCAGATGCT
ATTTCTCTGGGCAACCATGAGTTTGATCAGAATGTTGAGGGTTTGGTGCC
CTTCCTAAATGCCGTGGAATTCCCTGTTTTGGCCTGTAATCTGAACCTCA
CCGATGTTCCGGAAATGGCGGCTGCCAAGCAGCTGGCCAACTCGACGATC
CTCGAGAGAAATGGGGTGAAGGTTGGCGTTATCGGTTACCTTACGCCCGA
TACCAAGGTGCTTGCCTTTCGGAACAAAGTGGAGTACGAGGAGGAAATCG
TGTCCATCAATGCGGAGGCCGCAAAGCTAAAGGCTCAAGGCATCAATATC
ATCATCGCTTTGGGTCACTCTGGATACCAAAAGGATCAGGAGATAGCCAT
GAACTGCCCGGAGGTGGACATAGTCATTGGTGGCCATTCGCACACATTCT
TAGATGCCAATCAGCCGGTGGCCGATCCCACGGACTCTGATCCGGAGGCG
GTTCGAGGTCCCTATCCCACCACAGTGGTGCAGGCGAGCGGCAAGAAGGT
ACCAGTGGTTCAGGCATACGCGTATACCAAGTATCTCGGAAAGATTCATG
TTCAGTTTGATGCCGAGGGAAATCTGATCGAGTTTGATGGCGCTCCCATT
TTGCTGAATGCCTCTGTAGCTCAGGAGCAGGATCTCCTGGATTTGCTAGA
CGAATACCGCCCCAAGCTGGACGAGCTGGAGAACACGGTTCTGGGTTACA
CTAAGGTGTTTCTCGAGGGCGGCAACATCTGCCGCATGAGGGAGTGCAAC
CTTGGCAACTTGGTGACAGATGCCATGATCTATAGTCGCGTGTTGGAAAA
CAAGGGCGGCGAATTCTGGACAGATACTGCGATTGCTTTTATGCAGGGAG
GAGGAATCCGTGGCTCCGTCGATAAGAAGGATGATGGAGTCATCAATGGC
GCCACCCTCTTAGCCGTTCTTCCGTTCGAGAATAATCTGTACGTGACAAG
GATTCTCGGAAGCACCCTTCTGGCTGCCCTGGAACACTCCGCGTCTGTGA
GGTTGCAGGACTCCAATGGTGGATTCCTGCAGATGTCCGGACTGCGTGTG
GTGTACAACTACAACAATGAGCAGGGCAAGCGAGTGGTTTCCGCACAGGC
CCTATGCGCCAGCTGCGCCGTGCCCACGTACAAGAGCATCAATGAGACGG
CCCTGTACCAAGTGATCGTGCCCCAGTTCCTGCTGGAAGGCGGCGATGGC
TACACTCTGATCGAGGAGTCGGATCCCTTCACCGAGAGCATGCAGCGAAA
CGATCTGAATGCTACCATGGAGTACCTGAAGCAGCGCCATTTCGTGTATC
CCGAGATCGAGGAACGAATTGTGATTCACGAGAAGGCTGACACCGGATCG
GCGTCTGGTATTGTGGCCTCCATCTCCTTGCTTCTGCTCTCTTCCCTGCT
AACTAGATTCATCGCAAGCTTTCTAGACCAT

BO10468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
veil-RB 1800 CG4827-PB 1..1797 17..1813 8985 100 Plus
veil-RA 1800 CG4827-PA 1..1797 17..1813 8985 100 Plus
NT5E-2-RA 1758 CG30104-PA 83..767 111..795 755 74 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
veil-RB 2220 CG4827-RB 240..2036 17..1813 8985 100 Plus
veil-RA 2021 CG4827-RA 41..1837 17..1813 8985 100 Plus
CG43110-RB 8272 CG43110-RB 3903..4464 1813..1252 2810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17481373..17481934 1252..1813 2810 100 Plus
2R 25286936 2R 17481013..17481314 953..1254 1510 100 Plus
2R 25286936 2R 17480651..17480945 661..955 1475 100 Plus
2R 25286936 2R 17480332..17480588 404..660 1285 100 Plus
2R 25286936 2R 17479824..17480060 17..253 1185 100 Plus
2R 25286936 2R 17480117..17480267 253..403 755 100 Plus
2R 25286936 2R 17491751..17491873 673..795 285 82.1 Plus
2R 25286936 2R 17491022..17491164 111..253 280 79.7 Plus
2R 25286936 2R 17491219..17491346 257..384 235 78.9 Plus
2R 25286936 2R 17492277..17492390 1141..1254 195 78.1 Plus
Blast to na_te.dros performed on 2014-11-27 15:56:41 has no hits.

BO10468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:41 Download gff for BO10468.complete
Subject Subject Range Query Range Percent Splice Strand
CG4827-RA 1..1800 17..1814 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:06 Download gff for BO10468.complete
Subject Subject Range Query Range Percent Splice Strand
CG4827-RA 55..1860 7..1813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:19 Download gff for BO10468.complete
Subject Subject Range Query Range Percent Splice Strand
veil-RA 46..1837 22..1815 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:41 Download gff for BO10468.complete
Subject Subject Range Query Range Percent Splice Strand
CG4827-RA 55..1860 7..1813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:29 Download gff for BO10468.complete
Subject Subject Range Query Range Percent Splice Strand
veil-RA 46..1837 22..1815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:29 Download gff for BO10468.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17481016..17481313 956..1253 100 -> Plus
2R 17479829..17480059 22..252 100 -> Plus
2R 17480117..17480267 253..403 100 -> Plus
2R 17480332..17480588 404..660 100 -> Plus
2R 17480651..17480945 661..955 100 -> Plus
2R 17481375..17481934 1254..1815 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:19 Download gff for BO10468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13367334..13367564 22..252 100 -> Plus
arm_2R 13367622..13367772 253..403 100 -> Plus
arm_2R 13367837..13368093 404..660 100 -> Plus
arm_2R 13368156..13368450 661..955 100 -> Plus
arm_2R 13368521..13368818 956..1253 100 -> Plus
arm_2R 13368880..13369439 1254..1815 99   Plus

BO10468.pep Sequence

Translation from 16 to 1831

> BO10468.pep
MLPARGLLIGSCCLLALLIHPVQPNPIAPRAEVAAEFIILHNNDMHARFE
QTSVTSGTCSKEEANTDQCYGGFARVAYEVRKYRKEAEEGGTPVFYLNAG
DTYTGTAWFTVYKDKIASAFLNKLSPDAISLGNHEFDQNVEGLVPFLNAV
EFPVLACNLNLTDVPEMAAAKQLANSTILERNGVKVGVIGYLTPDTKVLA
FRNKVEYEEEIVSINAEAAKLKAQGINIIIALGHSGYQKDQEIAMNCPEV
DIVIGGHSHTFLDANQPVADPTDSDPEAVRGPYPTTVVQASGKKVPVVQA
YAYTKYLGKIHVQFDAEGNLIEFDGAPILLNASVAQEQDLLDLLDEYRPK
LDELENTVLGYTKVFLEGGNICRMRECNLGNLVTDAMIYSRVLENKGGEF
WTDTAIAFMQGGGIRGSVDKKDDGVINGATLLAVLPFENNLYVTRILGST
LLAALEHSASVRLQDSNGGFLQMSGLRVVYNYNNEQGKRVVSAQALCASC
AVPTYKSINETALYQVIVPQFLLEGGDGYTLIEESDPFTESMQRNDLNAT
MEYLKQRHFVYPEIEERIVIHEKADTGSASGIVASISLLLLSSLLTRFIA
SFLDH

BO10468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
veil-PB 599 CG4827-PB 1..599 1..599 3076 100 Plus
veil-PA 599 CG4827-PA 1..599 1..599 3076 100 Plus
NT5E-2-PA 585 CG30104-PA 13..585 17..600 1926 63.6 Plus
NT5E-2-PB 585 CG30104-PB 13..585 17..600 1926 63.6 Plus
CG30103-PA 584 CG30103-PA 26..556 36..573 1232 43.7 Plus