Clone Sequence Records
BO10468.3prime Sequence
948 bp (765 high quality bases) assembled on 2006-04-19
> BO10468.3prime
ATGGTCTAGAAAGCTTGCGATGAATCTAGTTAGCAGGGAAGAGAGCAGAA
GCAAGGAGATGGAGGCCACAATACCAGACGCCGATCCGGTGTCAGCCTTC
TCGTGAATCACAATTCGTTCCTCGATCTCGGGATACACGAAATGGCGCTG
CTTCAGGTACTCCATGGTAGCATTCAGATCGTTTCGCTGCATGCTCTCGG
TGAAGGGATCCGACTCCTCGATCAGAGTGTAGCCATCGCCGCCTTCCAGC
AGGAACTGGGGCACGATCACTTGGTACAGGGCCGTCTCATTGATGCTCTT
GTACGTGGGCACGGCGCAGCTGGCGCATAGGGCCTGTGCGGAAACCACTC
GCTTGCCCTGCTCATTGTTGTAGTTGTACACCACACGCAGTCCGGACATC
TGCAGGAATCCACCATTGGAGTCCTGCAACCTCACAGACGCGGAGTGTTC
CAGGGCAGCCAGAAGGGTGCTTCCGAGAATCCTTGTCACGTACAGATTAT
TCTCGAACGGAAGAACGGCTAAGAGGGTGGCGCCATTGATGACTCCATCA
TCCTTCTTATCGACGGAGCCACGGATTCCTCCTCCCTGCATAAAAGCAAT
CGCAGTATCTGTCCAGAATTCGCCGCCCTTGTTTTCCAACACGCGACTAT
AGATCATGGCATCTGTCACCAAGTTGCCAAGGTTGCACTCCCTCATGCGG
CAGATGTTGCCGCCCTCGAGAAACACCTTAGTGTAACCCAGAACCGTGTT
CTCCAGCTCGTCCAGCTTGGGGCGGTATTCGTCTAGCAAATCCAGGAGAT
CCTGCTCCTGAGCTACAGAGGCATTCAGCAAAATGGGAGCGCCATCAAAC
TCGATCAGATTTCCCTCGGCATCAAACTGAACATGAATCTTTCCGAGATA
CTTGGTATACGCGTATGCCCTGAACACTGGTACCTTCTTGCGCTCGCC
BO10468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4827-PA | 1800 | CG4827-RA | 897..1797 | 919..19 | 4505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veil-RB | 2220 | CG4827-RB | 1106..2036 | 948..19 | 4585 | 99.7 | Minus |
veil-RA | 2021 | CG4827-RA | 907..1837 | 948..19 | 4585 | 99.7 | Minus |
CG43110-RB | 8272 | CG43110-RB | 3903..4464 | 19..580 | 2810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17481373..17481934 | 580..19 | 2810 | 100 | Minus |
2R | 25286936 | 2R | 17481013..17481314 | 879..578 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 17480881..17480945 | 941..877 | 265 | 93.8 | Minus |
2R | 25286936 | 2R | 17492277..17492390 | 691..578 | 195 | 78.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:08:26 has no hits.
BO10468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:54 Download gff for
BO10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4827-PA | 867..1800 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:12 Download gff for
BO10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4827-PA | 867..1800 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:41 Download gff for
BO10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veil-RA | 907..1837 | 19..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:16 Download gff for
BO10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veil-RA | 907..1837 | 19..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:16 Download gff for
BO10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17480873..17480945 | 877..948 | 95 | -> | Minus |
2R | 17481016..17481313 | 579..876 | 100 | -> | Minus |
2R | 17481375..17481934 | 19..578 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:41 Download gff for
BO10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13368378..13368450 | 877..948 | 95 | -> | Minus |
arm_2R | 13368521..13368818 | 579..876 | 100 | -> | Minus |
arm_2R | 13368880..13369439 | 19..578 | 100 | | Minus |
BO10468.5prime Sequence
905 bp (827 high quality bases) assembled on 2006-04-19
> BO10468.5prime
GAAGTTATCAGTCGACATGTTACCTGCCCGTGGTCTCCTTATCGGATCAT
GCTGCCTACTGGCTCTACTGATTCATCCTGTGCAGCCGAATCCCATTGCA
CCCCGGGCGGAAGTTGCCGCCGAGTTCATCATTCTGCACAACAATGACAT
GCACGCCCGATTCGAGCAGACGAGTGTGACCAGTGGCACCTGCTCCAAGG
AGGAGGCCAATACGGATCAGTGCTACGGAGGATTCGCCAGGGTGGCATAC
GAGGTGCGAAAGTATCGCAAGGAGGCGGAGGAGGGTGGAACTCCAGTGTT
TTATCTCAATGCAGGTGACACCTATACCGGAACTGCTTGGTTCACCGTCT
ATAAGGACAAGATCGCCAGTGCTTTCCTCAACAAGCTATCGCCAGATGCT
ATTTCTCTGGGCAACCATGAGTTTGATCAGAATGTTGAGGGTTTGGTGCC
CTTCCTAAATGCCGTGGAATTCCCTGTTTTGGCCTGTAATCTGAACCTCA
CCGATGTTCCGGAAATGGCGGCTGCCAAGCAGCTGGCCAACTCGACGATC
CTCGAGAGAAATGGGGTGAAGGTTGGCGTTATCGGTTACCTTACGCCCGA
TACCAAGGTGCTTGCCTTTCGGAACAAAGTGGAGTACGAGGAGGAAATCG
TGTCCATCAATGCGGAGGCCGCAAAGCTAAAGGCTCAAGGCATCAATATC
ATCATCGCTTTGGGTCACTCTGGATACCAAAAGGATCAGGAGATAGCCAT
GAACTGCCCGGAGGTGGACATAGTCATTGGTGGCCATTCGCACACATTCT
TAGATGCCAATCAGCCGGTGGCCGATCCCACGGACTCTGATCCGGAAGCG
GTTCGAGGTCCCTATCCACCACAGTGGTGCAGGCGAGCGGAAGAAGGTAC
CAGTG
BO10468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4827-PA | 1800 | CG4827-RA | 1..851 | 17..867 | 4230 | 99.8 | Plus |
CG30104-PB | 1758 | CG30104-RB | 703..759 | 731..787 | 160 | 91.2 | Plus |
CG30104-PA | 1758 | CG30104-RA | 703..759 | 731..787 | 160 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veil-RB | 2220 | CG4827-RB | 240..1130 | 17..905 | 4390 | 99.7 | Plus |
veil-RA | 2021 | CG4827-RA | 41..931 | 17..905 | 4390 | 99.7 | Plus |
CG43110-RB | 8272 | CG43110-RB | 5249..5505 | 660..404 | 1285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17480332..17480588 | 404..660 | 1285 | 100 | Plus |
2R | 25286936 | 2R | 17479824..17480060 | 17..253 | 1185 | 100 | Plus |
2R | 25286936 | 2R | 17480651..17480897 | 661..905 | 1120 | 98.8 | Plus |
2R | 25286936 | 2R | 17480117..17480267 | 253..403 | 755 | 100 | Plus |
2R | 25286936 | 2R | 17491751..17491873 | 673..795 | 285 | 82.1 | Plus |
2R | 25286936 | 2R | 17491022..17491164 | 111..253 | 280 | 79.7 | Plus |
2R | 25286936 | 2R | 17491219..17491346 | 257..384 | 235 | 78.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:05:45 has no hits.
BO10468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:55 Download gff for
BO10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4827-PA | 1..891 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:14 Download gff for
BO10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4827-PA | 1..891 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:27 Download gff for
BO10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veil-RA | 32..931 | 7..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:13 Download gff for
BO10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veil-RA | 32..931 | 7..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:13 Download gff for
BO10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17479817..17480059 | 9..252 | 98 | -> | Plus |
2R | 17480117..17480267 | 253..403 | 100 | -> | Plus |
2R | 17480332..17480588 | 404..660 | 100 | -> | Plus |
2R | 17480651..17480897 | 661..905 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:27 Download gff for
BO10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13367322..13367564 | 9..252 | 98 | -> | Plus |
arm_2R | 13367622..13367772 | 253..403 | 100 | -> | Plus |
arm_2R | 13367837..13368093 | 404..660 | 100 | -> | Plus |
arm_2R | 13368156..13368402 | 661..905 | 98 | | Plus |
BO10468.complete Sequence
1831 bp (1831 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631777
> BO10468.complete
GAAGTTATCAGTCGACATGTTACCTGCCCGTGGTCTCCTTATCGGATCAT
GCTGCCTACTGGCTCTACTGATTCATCCTGTGCAGCCGAATCCCATTGCA
CCCCGGGCGGAAGTTGCCGCCGAGTTCATCATTCTGCACAACAATGACAT
GCACGCCCGATTCGAGCAGACGAGTGTGACCAGTGGCACCTGCTCCAAGG
AGGAGGCCAATACGGATCAGTGCTACGGAGGATTCGCCAGGGTGGCATAC
GAGGTGCGAAAGTATCGCAAGGAGGCGGAGGAGGGTGGAACTCCAGTGTT
TTATCTCAATGCAGGTGACACCTATACCGGAACTGCTTGGTTCACCGTCT
ATAAGGACAAGATCGCCAGTGCTTTCCTCAACAAGCTATCGCCAGATGCT
ATTTCTCTGGGCAACCATGAGTTTGATCAGAATGTTGAGGGTTTGGTGCC
CTTCCTAAATGCCGTGGAATTCCCTGTTTTGGCCTGTAATCTGAACCTCA
CCGATGTTCCGGAAATGGCGGCTGCCAAGCAGCTGGCCAACTCGACGATC
CTCGAGAGAAATGGGGTGAAGGTTGGCGTTATCGGTTACCTTACGCCCGA
TACCAAGGTGCTTGCCTTTCGGAACAAAGTGGAGTACGAGGAGGAAATCG
TGTCCATCAATGCGGAGGCCGCAAAGCTAAAGGCTCAAGGCATCAATATC
ATCATCGCTTTGGGTCACTCTGGATACCAAAAGGATCAGGAGATAGCCAT
GAACTGCCCGGAGGTGGACATAGTCATTGGTGGCCATTCGCACACATTCT
TAGATGCCAATCAGCCGGTGGCCGATCCCACGGACTCTGATCCGGAGGCG
GTTCGAGGTCCCTATCCCACCACAGTGGTGCAGGCGAGCGGCAAGAAGGT
ACCAGTGGTTCAGGCATACGCGTATACCAAGTATCTCGGAAAGATTCATG
TTCAGTTTGATGCCGAGGGAAATCTGATCGAGTTTGATGGCGCTCCCATT
TTGCTGAATGCCTCTGTAGCTCAGGAGCAGGATCTCCTGGATTTGCTAGA
CGAATACCGCCCCAAGCTGGACGAGCTGGAGAACACGGTTCTGGGTTACA
CTAAGGTGTTTCTCGAGGGCGGCAACATCTGCCGCATGAGGGAGTGCAAC
CTTGGCAACTTGGTGACAGATGCCATGATCTATAGTCGCGTGTTGGAAAA
CAAGGGCGGCGAATTCTGGACAGATACTGCGATTGCTTTTATGCAGGGAG
GAGGAATCCGTGGCTCCGTCGATAAGAAGGATGATGGAGTCATCAATGGC
GCCACCCTCTTAGCCGTTCTTCCGTTCGAGAATAATCTGTACGTGACAAG
GATTCTCGGAAGCACCCTTCTGGCTGCCCTGGAACACTCCGCGTCTGTGA
GGTTGCAGGACTCCAATGGTGGATTCCTGCAGATGTCCGGACTGCGTGTG
GTGTACAACTACAACAATGAGCAGGGCAAGCGAGTGGTTTCCGCACAGGC
CCTATGCGCCAGCTGCGCCGTGCCCACGTACAAGAGCATCAATGAGACGG
CCCTGTACCAAGTGATCGTGCCCCAGTTCCTGCTGGAAGGCGGCGATGGC
TACACTCTGATCGAGGAGTCGGATCCCTTCACCGAGAGCATGCAGCGAAA
CGATCTGAATGCTACCATGGAGTACCTGAAGCAGCGCCATTTCGTGTATC
CCGAGATCGAGGAACGAATTGTGATTCACGAGAAGGCTGACACCGGATCG
GCGTCTGGTATTGTGGCCTCCATCTCCTTGCTTCTGCTCTCTTCCCTGCT
AACTAGATTCATCGCAAGCTTTCTAGACCAT
BO10468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veil-RB | 1800 | CG4827-PB | 1..1797 | 17..1813 | 8985 | 100 | Plus |
veil-RA | 1800 | CG4827-PA | 1..1797 | 17..1813 | 8985 | 100 | Plus |
NT5E-2-RA | 1758 | CG30104-PA | 83..767 | 111..795 | 755 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veil-RB | 2220 | CG4827-RB | 240..2036 | 17..1813 | 8985 | 100 | Plus |
veil-RA | 2021 | CG4827-RA | 41..1837 | 17..1813 | 8985 | 100 | Plus |
CG43110-RB | 8272 | CG43110-RB | 3903..4464 | 1813..1252 | 2810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17481373..17481934 | 1252..1813 | 2810 | 100 | Plus |
2R | 25286936 | 2R | 17481013..17481314 | 953..1254 | 1510 | 100 | Plus |
2R | 25286936 | 2R | 17480651..17480945 | 661..955 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 17480332..17480588 | 404..660 | 1285 | 100 | Plus |
2R | 25286936 | 2R | 17479824..17480060 | 17..253 | 1185 | 100 | Plus |
2R | 25286936 | 2R | 17480117..17480267 | 253..403 | 755 | 100 | Plus |
2R | 25286936 | 2R | 17491751..17491873 | 673..795 | 285 | 82.1 | Plus |
2R | 25286936 | 2R | 17491022..17491164 | 111..253 | 280 | 79.7 | Plus |
2R | 25286936 | 2R | 17491219..17491346 | 257..384 | 235 | 78.9 | Plus |
2R | 25286936 | 2R | 17492277..17492390 | 1141..1254 | 195 | 78.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:56:41 has no hits.
BO10468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:41 Download gff for
BO10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4827-RA | 1..1800 | 17..1814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:06 Download gff for
BO10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4827-RA | 55..1860 | 7..1813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:19 Download gff for
BO10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veil-RA | 46..1837 | 22..1815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:41 Download gff for
BO10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4827-RA | 55..1860 | 7..1813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:29 Download gff for
BO10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veil-RA | 46..1837 | 22..1815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:29 Download gff for
BO10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17481016..17481313 | 956..1253 | 100 | -> | Plus |
2R | 17479829..17480059 | 22..252 | 100 | -> | Plus |
2R | 17480117..17480267 | 253..403 | 100 | -> | Plus |
2R | 17480332..17480588 | 404..660 | 100 | -> | Plus |
2R | 17480651..17480945 | 661..955 | 100 | -> | Plus |
2R | 17481375..17481934 | 1254..1815 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:19 Download gff for
BO10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13367334..13367564 | 22..252 | 100 | -> | Plus |
arm_2R | 13367622..13367772 | 253..403 | 100 | -> | Plus |
arm_2R | 13367837..13368093 | 404..660 | 100 | -> | Plus |
arm_2R | 13368156..13368450 | 661..955 | 100 | -> | Plus |
arm_2R | 13368521..13368818 | 956..1253 | 100 | -> | Plus |
arm_2R | 13368880..13369439 | 1254..1815 | 99 | | Plus |
BO10468.pep Sequence
Translation from 16 to 1831
> BO10468.pep
MLPARGLLIGSCCLLALLIHPVQPNPIAPRAEVAAEFIILHNNDMHARFE
QTSVTSGTCSKEEANTDQCYGGFARVAYEVRKYRKEAEEGGTPVFYLNAG
DTYTGTAWFTVYKDKIASAFLNKLSPDAISLGNHEFDQNVEGLVPFLNAV
EFPVLACNLNLTDVPEMAAAKQLANSTILERNGVKVGVIGYLTPDTKVLA
FRNKVEYEEEIVSINAEAAKLKAQGINIIIALGHSGYQKDQEIAMNCPEV
DIVIGGHSHTFLDANQPVADPTDSDPEAVRGPYPTTVVQASGKKVPVVQA
YAYTKYLGKIHVQFDAEGNLIEFDGAPILLNASVAQEQDLLDLLDEYRPK
LDELENTVLGYTKVFLEGGNICRMRECNLGNLVTDAMIYSRVLENKGGEF
WTDTAIAFMQGGGIRGSVDKKDDGVINGATLLAVLPFENNLYVTRILGST
LLAALEHSASVRLQDSNGGFLQMSGLRVVYNYNNEQGKRVVSAQALCASC
AVPTYKSINETALYQVIVPQFLLEGGDGYTLIEESDPFTESMQRNDLNAT
MEYLKQRHFVYPEIEERIVIHEKADTGSASGIVASISLLLLSSLLTRFIA
SFLDH
BO10468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veil-PB | 599 | CG4827-PB | 1..599 | 1..599 | 3076 | 100 | Plus |
veil-PA | 599 | CG4827-PA | 1..599 | 1..599 | 3076 | 100 | Plus |
NT5E-2-PA | 585 | CG30104-PA | 13..585 | 17..600 | 1926 | 63.6 | Plus |
NT5E-2-PB | 585 | CG30104-PB | 13..585 | 17..600 | 1926 | 63.6 | Plus |
CG30103-PA | 584 | CG30103-PA | 26..556 | 36..573 | 1232 | 43.7 | Plus |