Clone Sequence Records
BO10470.3prime Sequence
817 bp (815 high quality bases) assembled on 2006-04-19
> BO10470.3prime
ATGGTCTAGAAAGCTTGCCGCATCGTAGATCTGAAGATTGTCAAAGTCAT
CGAGCGTGTCCTCCGACCCCGAAGTGGTCAAGTCCGACAGCTCATCAAGG
CACTTCTGCCGCTTGCGGACATTCCAGTGCAGACCCTCGGCCAGGGAGTC
AAACCAATCGGAGATTTGGTCCTGGGAGCAAATGCTGGGCACGGGATAGA
TTGAGGTGGTCACTCGCAGGCTGTCCCCATGGTTCAGCTCCTGGTCGTTG
CGTCCGTCGAAGGAAACGCGTGAGGTGTTGCGGCTATCAGGTGAAATTGA
TATCTTTAGCTCCACTCCGGCGGGCACCACAATGGGCCTGAAGCTCAGCG
AGTGCGGGCAAATGGGCGTCACCAAAATGGCCGGCACGGAGGGATGGATC
ATGGAGGCACCGGCTGCTGCCGCATATGCTGTACTTCCCGTGGGCGTCGA
TACGATCAGGCCATCGCCCTGCACCGACGTAATGTATTTGCCCTCCAAGA
AGATATCAATGTTGCTCAGGTACGGCGAGGGTCCTCGGTTGATGACCACC
TCGTTAAGCACCAGGATGCTATTGTTGTGGCCATTGTTATTATTGCTGCC
AGCTTTTCCTGTTTGTCCGTTGTTAAGCTCCACGTAGTTGAGCTGCCTTT
GGAAACTCGGTATCAGGAGATTACCACCCACCGAGTGCAGAAGCGATTCC
TTGCGGCGTTCGCCCTTGCGGTGGATGGAGCAGCGCAGGCGACTACGTAG
CGTTAGGGCAGCATGACCCTCCAGGACATTGGTCACCTGTTCCTGGAAGT
TGTCGCACTGGAAGGGC
BO10470.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PA | 1563 | CG6145-RA | 762..1560 | 817..19 | 3995 | 100 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 846..1644 | 817..19 | 3995 | 100 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 462..1260 | 817..19 | 3995 | 100 | Minus |
| CG33156-PC | 1128 | CG33156-RC | 664..846 | 480..298 | 465 | 90.1 | Minus |
| CG33156-PA | 1365 | CG33156-RA | 901..1083 | 480..298 | 465 | 90.1 | Minus |
| CG33156-PE | 1473 | CG33156-RE | 1009..1191 | 480..298 | 465 | 90.1 | Minus |
| CG33156-PB | 1362 | CG33156-RB | 898..1080 | 480..298 | 465 | 90.1 | Minus |
| CG33156-PC | 1128 | CG33156-RC | 996..1061 | 148..83 | 155 | 89.3 | Minus |
| CG33156-PA | 1365 | CG33156-RA | 1233..1298 | 148..83 | 155 | 89.3 | Minus |
| CG33156-PE | 1473 | CG33156-RE | 1341..1406 | 148..83 | 155 | 89.3 | Minus |
| CG33156-PB | 1362 | CG33156-RB | 1230..1295 | 148..83 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RF | 1989 | CG6145-RF | 797..1595 | 817..19 | 3995 | 100 | Minus |
| CG6145-RE | 1843 | CG6145-RE | 651..1449 | 817..19 | 3995 | 100 | Minus |
| CG6145-RB | 1826 | CG6145-RB | 634..1432 | 817..19 | 3995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538198..13538711 | 304..817 | 2570 | 100 | Plus |
| 2R | 25286936 | 2R | 13537765..13538051 | 19..305 | 1435 | 100 | Plus |
| 2R | 25286936 | 2R | 13548954..13549224 | 304..574 | 770 | 85.6 | Plus |
| 2R | 25286936 | 2R | 13548644..13548896 | 53..305 | 545 | 81 | Plus |
| 2R | 25286936 | 2R | 13549306..13549391 | 731..816 | 205 | 82.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:15:17 has no hits.
BO10470.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:58 Download gff for
BO10470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-PA | 762..1563 | 15..817 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:18 Download gff for
BO10470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-PB | 462..1263 | 15..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:11:58 Download gff for
BO10470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 634..1435 | 15..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:10 Download gff for
BO10470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 634..1435 | 15..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:10 Download gff for
BO10470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13537762..13538049 | 15..303 | 99 | <- | Plus |
| 2R | 13538198..13538711 | 304..817 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:11:58 Download gff for
BO10470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9425267..9425554 | 15..303 | 99 | <- | Plus |
| arm_2R | 9425703..9426216 | 304..817 | 100 | | Plus |
BO10470.5prime Sequence
949 bp (803 high quality bases) assembled on 2006-04-19
> BO10470.5prime
GAAGTTATCAGTCGACATGAAGAACTCCGCCATGGTGATGCAGATTCAGG
ATCCGGCCAGTCAGCGTTTGACCTGGTACAAGCCACCTCTCACCGTACTC
GTGATCAAAAAGAAGGACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGT
GGAGTGGCTGGTGCAGGAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCG
TCTTAGAGGACAAGCTGCTACGGGATGATGTTAAGCTGGAGCAGGAGAGC
TCCAAGTTCCAAAAAGTGCATCAACAGTACGCCGGAGTAAGAGCGCGTTT
CCTGGATCTCCGTGAAAAGCTAGTGACCTTTAAAGATGGCCGCGATGACC
TGACCGATCGGATTGACTTTATCGTCTGCCTGGGAGGCGATGGCACTCTG
CTGTACGCCTCACAGCTGTTCCAGCAATCTGTCCCACCGGTGATGGCCTT
CTATCTGGGCTCCCTTGGGTTTCTTACGCCCTTCCAGTGCGACAACTTCC
AGGAACAGGTGACCAATGTCCTGGAGGGTCATGCTGCCCTAACGCTACGT
AGTCGCCTGCGCTGCTCCATCCACCGCAAGGGCGAACGCCGCAAGGAATC
GCTTCTGCACTCGGTGGGTGGTAATCTCCTGATACCGAGTTTCCAAAGGC
AGCTCAACTACGTGGAGCTTAACAACGGACAAACAGGAAAAGCTGGCAGC
AATAATAACAATGGCCACAACAATAGCATCCTGGTGCTTAACGAGGTGGT
CATCAACCGAGGACCCTCGCCGTACCTGAGCAACATTGATATCTTCTTGG
AGGGCAAATACATTACGTCGGTGCAGGGCGATGGCCTGATCGTATCGACG
CCCACGGGAAGTACAGCATATGCGGCAGCAGCCGGTGCCTCCATGATCCA
TCCCTCCGTGCCCGCCATTTTGGTGACGCCCATTTGCCCGCACTCGCTG
BO10470.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PA | 1563 | CG6145-RA | 301..1233 | 17..949 | 4640 | 99.8 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 385..1317 | 17..949 | 4640 | 99.8 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 1..933 | 17..949 | 4640 | 99.8 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 901..1034 | 815..948 | 345 | 90.2 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 1009..1142 | 815..948 | 345 | 90.2 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 898..1031 | 815..948 | 345 | 90.2 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 664..797 | 815..948 | 345 | 90.2 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 237..329 | 16..108 | 265 | 91.3 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 345..437 | 16..108 | 265 | 91.3 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 234..326 | 16..108 | 265 | 91.3 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 1..92 | 17..108 | 260 | 91.3 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 478..566 | 317..405 | 195 | 88.7 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 586..674 | 317..405 | 195 | 88.7 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 475..563 | 317..405 | 195 | 88.7 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 241..329 | 317..405 | 195 | 88.7 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 370..425 | 146..201 | 155 | 91 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 478..533 | 146..201 | 155 | 91 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 367..422 | 146..201 | 155 | 91 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 133..188 | 146..201 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RF | 1989 | CG6145-RF | 336..1268 | 17..949 | 4650 | 99.9 | Plus |
| CG6145-RE | 1843 | CG6145-RE | 190..1122 | 17..949 | 4650 | 99.9 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 173..1105 | 17..949 | 4650 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538240..13538855 | 949..334 | 3065 | 99.8 | Minus |
| 2R | 25286936 | 2R | 13538972..13539288 | 333..17 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 13548997..13549224 | 948..721 | 630 | 85.1 | Minus |
| 2R | 25286936 | 2R | 13549306..13549536 | 564..334 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13549668..13549856 | 201..16 | 445 | 83.6 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:55:56 has no hits.
BO10470.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:40:59 Download gff for
BO10470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-PA | 293..1233 | 11..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:20 Download gff for
BO10470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-PB | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:04:36 Download gff for
BO10470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 165..1105 | 11..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:44:48 Download gff for
BO10470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 165..1105 | 11..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:44:48 Download gff for
BO10470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13538240..13538855 | 334..949 | 99 | <- | Minus |
| 2R | 13538972..13539296 | 11..333 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:04:36 Download gff for
BO10470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9425745..9426360 | 334..949 | 99 | <- | Minus |
| arm_2R | 9426477..9426801 | 11..333 | 99 | | Minus |
BO10470.complete Sequence
1294 bp (1294 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ638674
> BO10470.complete
GAAGTTATCAGTCGACATGAAGAACTCCGCCATGGTGATGCAGATTCAGG
ATCCGGCCAGTCAGCGTTTGACCTGGTACAAGCCACCTCTCACCGTACTC
GTGATCAAAAAGAAGGACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGT
GGAGTGGCTGGTGCAGGAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCG
TCTTAGAGGACAAGCTGCTACGGGATGATGTTAAGCTGGAGCAGGAGAGC
TCCAAGTTCCAAAAAGTGCATCAACAGTACGCCGGAGTAAGAGCGCGTTT
CCTGGATCTCCGTGAAAAGCTAGTGACCTTTAAAGATGGCCGCGATGACC
TGACCGATCGGATTGACTTTATCGTCTGCCTGGGAGGCGATGGCACTCTG
CTGTACGCCTCACAGCTGTTCCAGCAATCTGTCCCACCGGTGATGGCCTT
CTATCTGGGCTCCCTTGGGTTTCTTACGCCCTTCCAGTGCGACAACTTCC
AGGAACAGGTGACCAATGTCCTGGAGGGTCATGCTGCCCTAACGCTACGT
AGTCGCCTGCGCTGCTCCATCCACCGCAAGGGCGAACGCCGCAAGGAATC
GCTTCTGCACTCGGTGGGTGGTAATCTCCTGATACCGAGTTTCCAAAGGC
AGCTCAACTACGTGGAGCTTAACAACGGACAAACAGGAAAAGCTGGCAGC
AATAATAACAATGGCCACAACAATAGCATCCTGGTGCTTAACGAGGTGGT
CATCAACCGAGGACCCTCGCCGTACCTGAGCAACATTGATATCTTCTTGG
AGGGCAAATACATTACGTCGGTGCAGGGCGATGGCCTGATCGTATCGACG
CCCACGGGAAGTACAGCATATGCGGCAGCAGCCGGTGCCTCCATGATCCA
TCCCTCCGTGCCGGCCATTTTGGTGACGCCCATTTGCCCGCACTCGCTGA
GCTTCAGGCCCATTGTGGTGCCCGCCGGAGTGGAGCTAAAGATATCAATT
TCACCTGATAGCCGCAACACCTCACGCGTTTCCTTCGACGGACGCAACGA
CCAGGAGCTGAACCATGGGGACAGCCTGCGAGTGACCACCTCAATCTATC
CCGTGCCCAGCATTTGCTCCCAGGACCAAATCTCCGATTGGTTTGACTCC
CTGGCCGAGGGTCTGCACTGGAATGTCCGCAAGCGGCAGAAGTGCCTTGA
TGAGCTGTCGGACTTGACCACTTCGGGGTCGGAGGACACGCTCGATGACT
TTGACAATCTTCAGATCTACGATGCGGCAAGCTTTCTAGACCAT
BO10470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RF | 1455 | CG6145-PF | 193..1452 | 17..1276 | 6300 | 100 | Plus |
| CG6145-RE | 1452 | CG6145-PE | 190..1449 | 17..1276 | 6300 | 100 | Plus |
| CG6145-RB | 1263 | CG6145-PB | 1..1260 | 17..1276 | 6300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RF | 1989 | CG6145-RF | 336..1595 | 17..1276 | 6300 | 100 | Plus |
| CG6145-RE | 1843 | CG6145-RE | 190..1449 | 17..1276 | 6300 | 100 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 173..1432 | 17..1276 | 6300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538198..13538855 | 991..334 | 3290 | 100 | Minus |
| 2R | 25286936 | 2R | 13538972..13539288 | 333..17 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 13537765..13538051 | 1276..990 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 13548954..13549224 | 991..721 | 770 | 85.6 | Minus |
| 2R | 25286936 | 2R | 13549306..13549536 | 564..334 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13548644..13548896 | 1242..990 | 545 | 81 | Minus |
| 2R | 25286936 | 2R | 13549668..13549856 | 201..16 | 445 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:49:00 has no hits.
BO10470.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:30 Download gff for
BO10470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 1..1263 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:01 Download gff for
BO10470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 99..1369 | 11..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:43 Download gff for
BO10470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 173..1432 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:30 Download gff for
BO10470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 99..1369 | 11..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:13 Download gff for
BO10470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 173..1432 | 17..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:13 Download gff for
BO10470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13537763..13538049 | 992..1278 | 99 | <- | Minus |
| 2R | 13538198..13538855 | 334..991 | 100 | <- | Minus |
| 2R | 13538972..13539288 | 17..333 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:43 Download gff for
BO10470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9425268..9425554 | 992..1278 | 99 | <- | Minus |
| arm_2R | 9425703..9426360 | 334..991 | 100 | <- | Minus |
| arm_2R | 9426477..9426793 | 17..333 | 100 | | Minus |
BO10470.pep Sequence
Translation from 16 to 1294
> BO10470.pep
MKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKKDSQVLPPFVQLVEWLVQ
EKHMVVWVESAVLEDKLLRDDVKLEQESSKFQKVHQQYAGVRARFLDLRE
KLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASQLFQQSVPPVMAFYLGSL
GFLTPFQCDNFQEQVTNVLEGHAALTLRSRLRCSIHRKGERRKESLLHSV
GGNLLIPSFQRQLNYVELNNGQTGKAGSNNNNGHNNSILVLNEVVINRGP
SPYLSNIDIFLEGKYITSVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPA
ILVTPICPHSLSFRPIVVPAGVELKISISPDSRNTSRVSFDGRNDQELNH
GDSLRVTTSIYPVPSICSQDQISDWFDSLAEGLHWNVRKRQKCLDELSDL
TTSGSEDTLDDFDNLQIYDAASFLDH
BO10470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PF | 484 | CG6145-PF | 65..484 | 1..420 | 2173 | 100 | Plus |
| CG6145-PE | 483 | CG6145-PE | 64..483 | 1..420 | 2173 | 100 | Plus |
| CG6145-PB | 420 | CG6145-PB | 1..420 | 1..420 | 2173 | 100 | Plus |
| CG6145-PC | 548 | CG6145-PC | 129..548 | 1..420 | 2173 | 100 | Plus |
| CG6145-PA | 520 | CG6145-PA | 101..520 | 1..420 | 2173 | 100 | Plus |
