Clone Sequence Records
BO10471.3prime Sequence
945 bp (804 high quality bases) assembled on 2006-04-19
> BO10471.3prime
ATGGTCTAGAAAGCTTGCCTTTTCGTTTGGCTTATCCTTGGGATCTTTAC
TATCGACACTTTCAGCCGCACTTTCCTCGGTCTTCTTCGACCTTTTCTGC
GCCTTTTCAGCCTGCTTTTGCTTTTCGGCCTCAGCCAGAGCAGCCTCCTG
CTCCTGTTTTAGTTTTTCCTTCTGCGCTGCAGCCTCAGCCACTTCCTCAT
CGTCCCAGTCGGCCATCGAGCGGTCGCGCTTTAGCCACGAATGCGTGGTG
TCCGGCTTGAAGGTCTGGTTGAACCATTTGATGCCGTTCTGCATGTCCTC
GATGATTTCACGGGACGTGAACATCACCTCATTCTGCACCGCCTGGTGGA
ACGTTGAGGTCTCGAACGTGCTCGAGTAGACCGAGTTGCGATCGTGGATG
AGCGCGCGTTGCGGGAACTTGGCCAGACAGGTGGCCAGCTCCAGGGCATT
GCCCAAGGCCGTGCCTGTGGGCACAATCCTGTTGACCAGTCCAATGTCGT
GGGCCTCCTGGGAGCCCACCGGACGTCCCGTAAGTATCAGGTCCAGGGCA
CGCGACAATCCAATCATAGCCGGCAGCCGGATGGTGCCGGCATCGAGCAT
TGGCACTCCAAAGCGTCGATTGAAAAATCCCAGTACTGCGGACTCCTCCA
TCACGCGCAGATCGCACATGAGAGCCAGCTCCAGACCGTTGGCTATGCAG
TAGCCATTGATGCCGCACACGACCGGCTTCTTGATCTGGCGACGCGTGGG
ACCCACGGAGCCCTCCGGTCGCATCAGGATGTCCACGCTGATCTCCTCCT
TCTCGTCGGTGCTAATCTCCAGGATGTCGAAGCCGGAGCAAAAGGAGCCG
CCCACGCCGTACAGCACGGGCACCGGCGACGTGTCGTCCGCCTCGAAATT
GGCGAAAGCGTCGCAAAGCTGCGATGCAGTAAGCGAATCGATGGC
BO10471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-PA | 1137 | CG5844-RA | 208..1134 | 945..19 | 4585 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-RA | 1355 | CG5844-RA | 292..1218 | 945..19 | 4605 | 99.8 | Minus |
CG5611-RC | 1375 | CG5611-RC | 470..548 | 683..605 | 200 | 83.5 | Minus |
CG5611-RA | 1096 | CG5611-RA | 470..548 | 683..605 | 200 | 83.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12434521..12435202 | 945..264 | 3380 | 99.7 | Minus |
3R | 32079331 | 3R | 12435262..12435506 | 263..19 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 27635513..27635591 | 605..683 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:54:55 has no hits.
BO10471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:01 Download gff for
BO10471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-PA | 208..1137 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:21 Download gff for
BO10471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-PA | 208..1137 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:18 Download gff for
BO10471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 288..1219 | 11..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:57 Download gff for
BO10471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 292..1223 | 11..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:57 Download gff for
BO10471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12434521..12435202 | 264..945 | 99 | -> | Minus |
3R | 12435262..12435511 | 11..263 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:18 Download gff for
BO10471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8260243..8260924 | 264..945 | 99 | -> | Minus |
arm_3R | 8260984..8261233 | 11..263 | 98 | | Minus |
BO10471.5prime Sequence
906 bp (805 high quality bases) assembled on 2006-04-19
> BO10471.5prime
GAAGTTATCAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGC
AGGTGGGTCAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCCTCG
ACAAAAGCGCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCC
ACCGAAGAACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCA
TCAATCGACCGCAGCAGCGTAATGCCATCGATTCGCTTACTGCATCGCAG
CTTTGCGACGCCTTCGCCAATTTCGAGGCGGACGACACGTCGCCGGTGGC
CGTGCTGTACGGCGTGGGCGGCTCCTTTTGCTCCGGCTTCGACATCCTGG
AGATTAGCACCGACGAGAAGGAGGAGATCAGCGTGGACATCCTGATGCGA
CCGGAGGGCTCCGTGGGTCCCACGCGTCGCCAGATCAAGAAGCCGGTCGT
GTGCGGCATCAATGGCTACTGCATAGCCAACGGTCTGGAGCTGGCTCTCA
TGTGCGATCTGCGCGTGATGGAGGAGTCCGCAGTACTGGGATTTTTCAAT
CGACGCTTTGGAGTGCCAATGCTCGATGCCGGCACCATCCGGCTGCCGGC
TATGATTGGATTGTCGCGTGCCCTGGACCTGATACTTACGGGACGTCCGG
TGGGCTCCCAGGAGGCCCACGACATTGGACTGGTCAACAGGATTGTGCCC
ACAGGCACGGCCTTGGGCAATGCCCTGGAGCTGGCCACCTGTCTGGCCAA
GTTCCCGCAACGCGCGCTCATCCACGATCGCAACTCGGTCTACTCGAGCA
CGTTCGAGACCTCAACGTTCCACCAGGCGGTGCAGAATGAGGTGATGTTC
ACGTCCCGTGAAATCATCGAGGACATGCAGAACGGCATCAAATGGGTCAA
CCAGAC
BO10471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-PA | 1137 | CG5844-RA | 1..890 | 17..906 | 4425 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-RA | 1355 | CG5844-RA | 84..974 | 16..906 | 4440 | 99.9 | Plus |
CG5611-RC | 1375 | CG5611-RC | 470..548 | 486..564 | 200 | 83.5 | Plus |
CG5611-RA | 1096 | CG5611-RA | 470..548 | 486..564 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12434415..12435202 | 118..905 | 3925 | 99.9 | Plus |
3R | 32079331 | 3R | 12434242..12434345 | 16..119 | 520 | 100 | Plus |
3R | 32079331 | 3R | 27635513..27635591 | 564..486 | 200 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:12:13 has no hits.
BO10471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:02 Download gff for
BO10471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:22 Download gff for
BO10471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:27:18 Download gff for
BO10471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 74..970 | 8..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:28 Download gff for
BO10471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 78..974 | 8..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:28 Download gff for
BO10471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12434242..12434345 | 16..119 | 100 | -> | Plus |
3R | 12434417..12435202 | 120..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:27:18 Download gff for
BO10471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8259964..8260067 | 16..119 | 100 | -> | Plus |
arm_3R | 8260139..8260924 | 120..906 | 99 | | Plus |
BO10471.complete Sequence
1168 bp (1168 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631779
> BO10471.complete
GAAGTTATCAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGC
AGGTGGGTCAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCCTCG
ACAAAAGCGCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCC
ACCGAAGAACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCA
TCAATCGACCGCAGCAGCGTAATGCCATCGATTCGCTTACTGCATCGCAG
CTTTGCGACGCCTTCGCCAATTTCGAGGCGGACGACACGTCGCCGGTGGC
CGTGCTGTACGGCGTGGGCGGCTCCTTTTGCTCCGGCTTCGACATCCTGG
AGATTAGCACCGACGAGAAGGAGGAGATCAGCGTGGACATCCTGATGCGA
CCGGAGGGCTCCGTGGGTCCCACGCGTCGCCAGATCAAGAAGCCGGTCGT
GTGCGGCATCAATGGCTACTGCATAGCCAACGGTCTGGAGCTGGCTCTCA
TGTGCGATCTGCGCGTGATGGAGGAGTCCGCAGTACTGGGATTTTTCAAT
CGACGCTTTGGAGTGCCAATGCTCGATGCCGGCACCATCCGGCTGCCGGC
TATGATTGGATTGTCGCGTGCCCTGGACCTGATACTTACGGGACGTCCGG
TGGGCTCCCAGGAGGCCCACGACATTGGACTGGTCAACAGGATTGTGCCC
ACAGGCACGGCCTTGGGCAATGCCCTGGAGCTGGCCACCTGTCTGGCCAA
GTTCCCGCAACGCGCGCTCATCCACGATCGCAACTCGGTCTACTCGAGCA
CGTTCGAGACCTCAACGTTCCACCAGGCGGTGCAGAATGAGGTGATGTTC
ACGTCCCGTGAAATCATCGAGGACATGCAGAACGGCATCAAATGGTTCAA
CCAGACCTTCAAGCCGGACACCACGCATTCGTGGCTAAAGCGCGACCGCT
CGATGGCCGACTGGGACGATGAGGAAGTGGCTGAGGCTGCAGCGCAGAAG
GAAAAACTAAAACAGGAGCAGGAGGCTGCTCTGGCTGAGGCCGAAAAGCA
AAAGCAGGCTGAAAAGGCGCAGAAAAGGTCGAAGAAGACCGAGGAAAGTG
CGGCTGAAAGTGTCGATAGTAAAGATCCCAAGGATAAGCCAAACGAAAAG
GCAAGCTTTCTAGACCAT
BO10471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-RA | 1137 | CG5844-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
CG5611-RC | 981 | CG5611-PC | 449..527 | 486..564 | 200 | 83.5 | Plus |
CG5611-RA | 981 | CG5611-PA | 449..527 | 486..564 | 200 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-RA | 1355 | CG5844-RA | 84..1218 | 16..1150 | 5675 | 100 | Plus |
CG5611-RC | 1375 | CG5611-RC | 470..548 | 486..564 | 200 | 83.5 | Plus |
CG5611-RA | 1096 | CG5611-RA | 470..548 | 486..564 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12434415..12435202 | 118..905 | 3940 | 100 | Plus |
3R | 32079331 | 3R | 12435262..12435506 | 906..1150 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 12434242..12434345 | 16..119 | 520 | 100 | Plus |
3R | 32079331 | 3R | 27635513..27635591 | 564..486 | 200 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:50:18 has no hits.
BO10471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:31 Download gff for
BO10471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 1..1137 | 17..1151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:02 Download gff for
BO10471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 74..1219 | 8..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:14 Download gff for
BO10471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 81..1214 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:31 Download gff for
BO10471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 74..1219 | 8..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:58 Download gff for
BO10471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 85..1218 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:58 Download gff for
BO10471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12434243..12434345 | 17..119 | 100 | -> | Plus |
3R | 12434417..12435202 | 120..905 | 100 | -> | Plus |
3R | 12435262..12435506 | 906..1152 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:14 Download gff for
BO10471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8259965..8260067 | 17..119 | 100 | -> | Plus |
arm_3R | 8260139..8260924 | 120..905 | 100 | -> | Plus |
arm_3R | 8260984..8261228 | 906..1152 | 99 | | Plus |
BO10471.pep Sequence
Translation from 16 to 1168
> BO10471.pep
MLRKFGGLLAQQVGQQARFTAASRTFSSTKALHKDPATQEAEAAPPKNIL
VEKDKNITLIGINRPQQRNAIDSLTASQLCDAFANFEADDTSPVAVLYGV
GGSFCSGFDILEISTDEKEEISVDILMRPEGSVGPTRRQIKKPVVCGING
YCIANGLELALMCDLRVMEESAVLGFFNRRFGVPMLDAGTIRLPAMIGLS
RALDLILTGRPVGSQEAHDIGLVNRIVPTGTALGNALELATCLAKFPQRA
LIHDRNSVYSSTFETSTFHQAVQNEVMFTSREIIEDMQNGIKWFNQTFKP
DTTHSWLKRDRSMADWDDEEVAEAAAQKEKLKQEQEAALAEAEKQKQAEK
AQKRSKKTEESAAESVDSKDPKDKPNEKASFLDH
BO10471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-PA | 378 | CG5844-PA | 1..378 | 1..378 | 1924 | 100 | Plus |
CG5611-PC | 326 | CG5611-PC | 28..325 | 34..330 | 832 | 54.3 | Plus |
CG5611-PA | 326 | CG5611-PA | 28..325 | 34..330 | 832 | 54.3 | Plus |
CG6543-PA | 295 | CG6543-PA | 42..269 | 47..269 | 259 | 29.7 | Plus |
CG6543-PB | 295 | CG6543-PB | 42..269 | 47..269 | 259 | 29.7 | Plus |