Clone BO10471 Report

Search the DGRC for BO10471

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG5844-RA
Protein status:BO10471.pep: validated full length
Sequenced Size:1168

Clone Sequence Records

BO10471.3prime Sequence

945 bp (804 high quality bases) assembled on 2006-04-19

> BO10471.3prime
ATGGTCTAGAAAGCTTGCCTTTTCGTTTGGCTTATCCTTGGGATCTTTAC
TATCGACACTTTCAGCCGCACTTTCCTCGGTCTTCTTCGACCTTTTCTGC
GCCTTTTCAGCCTGCTTTTGCTTTTCGGCCTCAGCCAGAGCAGCCTCCTG
CTCCTGTTTTAGTTTTTCCTTCTGCGCTGCAGCCTCAGCCACTTCCTCAT
CGTCCCAGTCGGCCATCGAGCGGTCGCGCTTTAGCCACGAATGCGTGGTG
TCCGGCTTGAAGGTCTGGTTGAACCATTTGATGCCGTTCTGCATGTCCTC
GATGATTTCACGGGACGTGAACATCACCTCATTCTGCACCGCCTGGTGGA
ACGTTGAGGTCTCGAACGTGCTCGAGTAGACCGAGTTGCGATCGTGGATG
AGCGCGCGTTGCGGGAACTTGGCCAGACAGGTGGCCAGCTCCAGGGCATT
GCCCAAGGCCGTGCCTGTGGGCACAATCCTGTTGACCAGTCCAATGTCGT
GGGCCTCCTGGGAGCCCACCGGACGTCCCGTAAGTATCAGGTCCAGGGCA
CGCGACAATCCAATCATAGCCGGCAGCCGGATGGTGCCGGCATCGAGCAT
TGGCACTCCAAAGCGTCGATTGAAAAATCCCAGTACTGCGGACTCCTCCA
TCACGCGCAGATCGCACATGAGAGCCAGCTCCAGACCGTTGGCTATGCAG
TAGCCATTGATGCCGCACACGACCGGCTTCTTGATCTGGCGACGCGTGGG
ACCCACGGAGCCCTCCGGTCGCATCAGGATGTCCACGCTGATCTCCTCCT
TCTCGTCGGTGCTAATCTCCAGGATGTCGAAGCCGGAGCAAAAGGAGCCG
CCCACGCCGTACAGCACGGGCACCGGCGACGTGTCGTCCGCCTCGAAATT
GGCGAAAGCGTCGCAAAGCTGCGATGCAGTAAGCGAATCGATGGC

BO10471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-PA 1137 CG5844-RA 208..1134 945..19 4585 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1355 CG5844-RA 292..1218 945..19 4605 99.8 Minus
CG5611-RC 1375 CG5611-RC 470..548 683..605 200 83.5 Minus
CG5611-RA 1096 CG5611-RA 470..548 683..605 200 83.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12434521..12435202 945..264 3380 99.7 Minus
3R 32079331 3R 12435262..12435506 263..19 1225 100 Minus
3R 32079331 3R 27635513..27635591 605..683 200 83.5 Plus
Blast to na_te.dros performed on 2015-02-10 19:54:55 has no hits.

BO10471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:01 Download gff for BO10471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-PA 208..1137 18..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:21 Download gff for BO10471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-PA 208..1137 18..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:18 Download gff for BO10471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 288..1219 11..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:57 Download gff for BO10471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 292..1223 11..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:57 Download gff for BO10471.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12434521..12435202 264..945 99 -> Minus
3R 12435262..12435511 11..263 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:18 Download gff for BO10471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8260243..8260924 264..945 99 -> Minus
arm_3R 8260984..8261233 11..263 98   Minus

BO10471.5prime Sequence

906 bp (805 high quality bases) assembled on 2006-04-19

> BO10471.5prime
GAAGTTATCAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGC
AGGTGGGTCAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCCTCG
ACAAAAGCGCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCC
ACCGAAGAACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCA
TCAATCGACCGCAGCAGCGTAATGCCATCGATTCGCTTACTGCATCGCAG
CTTTGCGACGCCTTCGCCAATTTCGAGGCGGACGACACGTCGCCGGTGGC
CGTGCTGTACGGCGTGGGCGGCTCCTTTTGCTCCGGCTTCGACATCCTGG
AGATTAGCACCGACGAGAAGGAGGAGATCAGCGTGGACATCCTGATGCGA
CCGGAGGGCTCCGTGGGTCCCACGCGTCGCCAGATCAAGAAGCCGGTCGT
GTGCGGCATCAATGGCTACTGCATAGCCAACGGTCTGGAGCTGGCTCTCA
TGTGCGATCTGCGCGTGATGGAGGAGTCCGCAGTACTGGGATTTTTCAAT
CGACGCTTTGGAGTGCCAATGCTCGATGCCGGCACCATCCGGCTGCCGGC
TATGATTGGATTGTCGCGTGCCCTGGACCTGATACTTACGGGACGTCCGG
TGGGCTCCCAGGAGGCCCACGACATTGGACTGGTCAACAGGATTGTGCCC
ACAGGCACGGCCTTGGGCAATGCCCTGGAGCTGGCCACCTGTCTGGCCAA
GTTCCCGCAACGCGCGCTCATCCACGATCGCAACTCGGTCTACTCGAGCA
CGTTCGAGACCTCAACGTTCCACCAGGCGGTGCAGAATGAGGTGATGTTC
ACGTCCCGTGAAATCATCGAGGACATGCAGAACGGCATCAAATGGGTCAA
CCAGAC

BO10471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-PA 1137 CG5844-RA 1..890 17..906 4425 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1355 CG5844-RA 84..974 16..906 4440 99.9 Plus
CG5611-RC 1375 CG5611-RC 470..548 486..564 200 83.5 Plus
CG5611-RA 1096 CG5611-RA 470..548 486..564 200 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12434415..12435202 118..905 3925 99.9 Plus
3R 32079331 3R 12434242..12434345 16..119 520 100 Plus
3R 32079331 3R 27635513..27635591 564..486 200 83.5 Minus
Blast to na_te.dros performed on 2015-02-11 12:12:13 has no hits.

BO10471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:02 Download gff for BO10471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:22 Download gff for BO10471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:27:18 Download gff for BO10471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 74..970 8..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:28 Download gff for BO10471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 78..974 8..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:28 Download gff for BO10471.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12434242..12434345 16..119 100 -> Plus
3R 12434417..12435202 120..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:27:18 Download gff for BO10471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8259964..8260067 16..119 100 -> Plus
arm_3R 8260139..8260924 120..906 99   Plus

BO10471.complete Sequence

1168 bp (1168 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631779

> BO10471.complete
GAAGTTATCAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGC
AGGTGGGTCAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCCTCG
ACAAAAGCGCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCC
ACCGAAGAACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCA
TCAATCGACCGCAGCAGCGTAATGCCATCGATTCGCTTACTGCATCGCAG
CTTTGCGACGCCTTCGCCAATTTCGAGGCGGACGACACGTCGCCGGTGGC
CGTGCTGTACGGCGTGGGCGGCTCCTTTTGCTCCGGCTTCGACATCCTGG
AGATTAGCACCGACGAGAAGGAGGAGATCAGCGTGGACATCCTGATGCGA
CCGGAGGGCTCCGTGGGTCCCACGCGTCGCCAGATCAAGAAGCCGGTCGT
GTGCGGCATCAATGGCTACTGCATAGCCAACGGTCTGGAGCTGGCTCTCA
TGTGCGATCTGCGCGTGATGGAGGAGTCCGCAGTACTGGGATTTTTCAAT
CGACGCTTTGGAGTGCCAATGCTCGATGCCGGCACCATCCGGCTGCCGGC
TATGATTGGATTGTCGCGTGCCCTGGACCTGATACTTACGGGACGTCCGG
TGGGCTCCCAGGAGGCCCACGACATTGGACTGGTCAACAGGATTGTGCCC
ACAGGCACGGCCTTGGGCAATGCCCTGGAGCTGGCCACCTGTCTGGCCAA
GTTCCCGCAACGCGCGCTCATCCACGATCGCAACTCGGTCTACTCGAGCA
CGTTCGAGACCTCAACGTTCCACCAGGCGGTGCAGAATGAGGTGATGTTC
ACGTCCCGTGAAATCATCGAGGACATGCAGAACGGCATCAAATGGTTCAA
CCAGACCTTCAAGCCGGACACCACGCATTCGTGGCTAAAGCGCGACCGCT
CGATGGCCGACTGGGACGATGAGGAAGTGGCTGAGGCTGCAGCGCAGAAG
GAAAAACTAAAACAGGAGCAGGAGGCTGCTCTGGCTGAGGCCGAAAAGCA
AAAGCAGGCTGAAAAGGCGCAGAAAAGGTCGAAGAAGACCGAGGAAAGTG
CGGCTGAAAGTGTCGATAGTAAAGATCCCAAGGATAAGCCAAACGAAAAG
GCAAGCTTTCTAGACCAT

BO10471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1137 CG5844-PA 1..1134 17..1150 5670 100 Plus
CG5611-RC 981 CG5611-PC 449..527 486..564 200 83.5 Plus
CG5611-RA 981 CG5611-PA 449..527 486..564 200 83.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1355 CG5844-RA 84..1218 16..1150 5675 100 Plus
CG5611-RC 1375 CG5611-RC 470..548 486..564 200 83.5 Plus
CG5611-RA 1096 CG5611-RA 470..548 486..564 200 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12434415..12435202 118..905 3940 100 Plus
3R 32079331 3R 12435262..12435506 906..1150 1225 100 Plus
3R 32079331 3R 12434242..12434345 16..119 520 100 Plus
3R 32079331 3R 27635513..27635591 564..486 200 83.5 Minus
Blast to na_te.dros performed on 2014-11-27 13:50:18 has no hits.

BO10471.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:31 Download gff for BO10471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1137 17..1151 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:02 Download gff for BO10471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 74..1219 8..1158 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:14 Download gff for BO10471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 81..1214 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:31 Download gff for BO10471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 74..1219 8..1158 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:58 Download gff for BO10471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 85..1218 17..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:58 Download gff for BO10471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12434243..12434345 17..119 100 -> Plus
3R 12434417..12435202 120..905 100 -> Plus
3R 12435262..12435506 906..1152 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:14 Download gff for BO10471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8259965..8260067 17..119 100 -> Plus
arm_3R 8260139..8260924 120..905 100 -> Plus
arm_3R 8260984..8261228 906..1152 99   Plus

BO10471.pep Sequence

Translation from 16 to 1168

> BO10471.pep
MLRKFGGLLAQQVGQQARFTAASRTFSSTKALHKDPATQEAEAAPPKNIL
VEKDKNITLIGINRPQQRNAIDSLTASQLCDAFANFEADDTSPVAVLYGV
GGSFCSGFDILEISTDEKEEISVDILMRPEGSVGPTRRQIKKPVVCGING
YCIANGLELALMCDLRVMEESAVLGFFNRRFGVPMLDAGTIRLPAMIGLS
RALDLILTGRPVGSQEAHDIGLVNRIVPTGTALGNALELATCLAKFPQRA
LIHDRNSVYSSTFETSTFHQAVQNEVMFTSREIIEDMQNGIKWFNQTFKP
DTTHSWLKRDRSMADWDDEEVAEAAAQKEKLKQEQEAALAEAEKQKQAEK
AQKRSKKTEESAAESVDSKDPKDKPNEKASFLDH

BO10471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-PA 378 CG5844-PA 1..378 1..378 1924 100 Plus
CG5611-PC 326 CG5611-PC 28..325 34..330 832 54.3 Plus
CG5611-PA 326 CG5611-PA 28..325 34..330 832 54.3 Plus
CG6543-PA 295 CG6543-PA 42..269 47..269 259 29.7 Plus
CG6543-PB 295 CG6543-PB 42..269 47..269 259 29.7 Plus