Clone BO10472 Report

Search the DGRC for BO10472

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptb-RA
Protein status:BO10472.pep: validated full length
Sequenced Size:1759

Clone Sequence Records

BO10472.3prime Sequence

888 bp (859 high quality bases) assembled on 2006-04-19

> BO10472.3prime
ATGGTCTAGAAAGCTTGCCAAGTTTTGGGCGAGCGATTCGATCTCGTCCA
GAAAGTAGACCATGTCCGACTCCTCCAGGCAGGAGTTCTGCAGCACCAGG
CGAAAGAAGTTGGGCAGCTGGCGCAACGGCTGGTACGTGATCATCATGGA
GCCCTTCTTGATCATGCCCTCCTTGACCTTCGGCGCCACCTTATGCAGAC
GGTCGTAGAACTCGCGATTGCGCTCCATTTCCCGCAGACCGGGCGGCACA
TACCAGAAGCTAATGTTGGTGCACTCGGGACTCTCGAGGACGAGCTCGAA
TCCAGGACGCTCCCTCACCTTGGCCGTGAAGAACTCGGCCATGCGGAAGA
CCTTCTCGACATGCGCCTCCAGACCCTGGGTGCCCTTCGCCTTCCACATG
AACCAGAACTTGAAGACATCCGCTCGTCGGCCGCACTGGATGTGCTTGTC
GCCGGTGTCGAAGGATGTGTCATAGAACTTGTCCTTCTGGAACAAGTATG
TCGCATTGGTCGAATGGCACTGGGCCAGCACCTGCTGGTGACGCGTCAGG
AAGGTGGAACACTGTTGCGAGGCAGCCAGCAGCTTGTGTGGATTCCAAGT
GACCGAATCAGCCCGTTCGATGCCATTGAGCAGATGGCGATACTTCTTGG
ACATGAGCGCACCGCCACCCCAAGCCGCATCCACGTGCATCCACATGTTG
TACTTCTTGCACACCTCCGAGATTCCAGCCAGATCATCGAAGGCGCCCAG
CACAGTGGTACCCGCTGTGGCCGATACCATCAGCGGCTGCCAGCCGTTCT
CCAGGCACAGCTTCACCTGTTTCTCCAGGTCGCTCAGCCGCATCTTGCCC
ACCTCGTTGGTGGCTATCTTGCGCACATGATCGCTGCC

BO10472.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7811-PA 1728 b-RA 856..1725 888..19 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
b-RC 2026 CG7811-RC 995..1864 888..19 4350 100 Minus
b-RB 2135 CG7811-RB 995..1864 888..19 4350 100 Minus
b-RA 2026 CG7811-RA 995..1864 888..19 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13823113..13823708 614..19 2980 100 Minus
2L 23513712 2L 13822775..13823050 888..613 1380 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:02:18 has no hits.

BO10472.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:41:03 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:23 Download gff for BO10472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7811-PA 856..1728 15..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:51:47 Download gff for BO10472.3prime
Subject Subject Range Query Range Percent Splice Strand
b-RA 995..1867 15..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:31 Download gff for BO10472.3prime
Subject Subject Range Query Range Percent Splice Strand
b-RA 995..1867 15..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:31 Download gff for BO10472.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13822775..13823049 614..888 100 -> Minus
2L 13823114..13823714 14..613 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:51:47 Download gff for BO10472.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13822775..13823049 614..888 100 -> Minus
arm_2L 13823114..13823714 14..613 99 -> Minus

BO10472.5prime Sequence

935 bp (844 high quality bases) assembled on 2006-04-19

> BO10472.5prime
GAAGTTATCAGTCGACATGCTGGCCAGCGAGAACTTTCCCACACATCACT
TCAAGGAATCTATATTTAAGCCGTACAGTACGACGAGTGGCGATGATTTG
GCAAGCGTTAGCCCATTGACAGCGACGGCAGCGTTGGTGGCGTCCACGTC
GTCACCGGCTGATTCCACCTCCACAGTTGCATTCGAGCAGGCCAGCAAAA
TGTTGGCCAACGCCGCCAACAATAATAATAATAATAATAACAACATCACG
AGCACCAAGGATGATCTATCCAGCTTTGTGGCCAGCCATCCGGCGGCAGA
GTTCGAGGGCTTCATCCGCGCTTGCGTCGACGAGATCATCAAGCTGGCCG
TCTTCCAGGGCACCAATCGCTCCTCGAAGGTCGTCGAGTGGCACGAGCCA
GCTGAGCTGCGACAGCTCTTTGACTTCCAGCTGCGGGAGCAGGGCGAATC
GCAGGACAAGCTGCGCGAGCTGCTGCGGGAAACGATTCGATTCTCCGTGA
AGACAGGACATCCGTACTTCATCAATCAGTTGTACTCGGGTGTGGATCCA
TACGCGCTGGTAGGTCAATGGCTCACCGATGCCCTCAATCCCAGCGTGTA
CACGTACGAGGTGGCTCCACTCTTTACGCTGATGGAGGAGCAGGTGTTGG
CCGAGATGCGACGCATTGTGGGCTTCCCCAATGGCGGCCAGGGTGATGGC
ATCTTCTGTCCCGGCGGCTCGATAGCCAACGGTTATGCAATCAGCTGCGC
CCGCTACAGACACTCGCCCGAGTCCAAGAAAAACGGACTCTTTAATGCCA
AGCCGCTGATTATCTTCACCTCGGAGGACGCGCACTACTCCGTGGAGAAG
CTGGCCATGTTCATGGGCTTCGGCAGCGATCATGTGCGCAAGATAGCCAA
CAACGAGGTGGGCAAGATGCGGCTGAGCGACCTGG

BO10472.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7811-PA 1728 b-RA 1..919 17..935 4570 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
b-RC 2026 CG7811-RC 140..1058 17..935 4580 99.9 Plus
b-RB 2135 CG7811-RB 140..1058 17..935 4580 99.9 Plus
b-RA 2026 CG7811-RA 140..1058 17..935 4580 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13821387..13822148 17..778 3810 100 Plus
2L 23513712 2L 13822680..13822838 777..935 780 99.4 Plus
Blast to na_te.dros performed 2015-02-13 00:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 4302..4408 311..426 145 62.9 Plus

BO10472.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:41:04 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:24 Download gff for BO10472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7811-PA 1..919 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:01:26 Download gff for BO10472.5prime
Subject Subject Range Query Range Percent Splice Strand
b-RA 133..1058 9..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:45 Download gff for BO10472.5prime
Subject Subject Range Query Range Percent Splice Strand
b-RA 133..1058 9..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:45 Download gff for BO10472.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13821380..13822148 9..778 99 -> Plus
2L 13822682..13822838 779..935 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:01:26 Download gff for BO10472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13821380..13822148 9..778 99 -> Plus
arm_2L 13822682..13822838 779..935 99   Plus

BO10472.complete Sequence

1759 bp (1759 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631780

> BO10472.complete
GAAGTTATCAGTCGACATGCTGGCCAGCGAGAACTTTCCCACACATCACT
TCAAGGAATCTATATTTAAGCCGTACAGTACGACGAGTGGCGATGATTTG
GCAAGCGTTAGCCCATTGACAGCGACGGCAGCGTTGGTGGCGTCCACGTC
GTCACCGGCTGATTCCACCTCCACAGTTGCATTCGAGCAGGCCAGCAAAA
TGTTGGCCAACGCCGCCAACAATAATAATAATAATAATAACAACATCACG
AGCACCAAGGATGATCTATCCAGCTTTGTGGCCAGCCATCCGGCGGCAGA
GTTCGAGGGCTTCATCCGCGCTTGCGTCGACGAGATCATCAAGCTGGCCG
TCTTCCAGGGCACCAATCGCTCCTCGAAGGTCGTCGAGTGGCACGAGCCA
GCTGAGCTGCGACAGCTCTTTGACTTCCAGCTGCGGGAGCAGGGCGAATC
GCAGGACAAGCTGCGCGAGCTGCTGCGGGAAACGATTCGATTCTCCGTGA
AGACAGGACATCCGTACTTCATCAATCAGTTGTACTCGGGTGTGGATCCA
TACGCGCTGGTAGGTCAATGGCTCACCGATGCCCTCAATCCCAGCGTGTA
CACGTACGAGGTGGCTCCACTCTTTACGCTGATGGAGGAGCAGGTGTTGG
CCGAGATGCGACGCATTGTGGGCTTCCCCAATGGCGGCCAGGGTGATGGC
ATCTTCTGTCCCGGCGGCTCGATAGCCAACGGTTATGCAATCAGCTGCGC
CCGCTACAGACACTCGCCCGAGTCCAAGAAAAACGGACTCTTTAATGCCA
AGCCGCTGATTATCTTCACCTCGGAGGACGCGCACTACTCCGTGGAGAAG
CTGGCCATGTTCATGGGCTTCGGCAGCGATCATGTGCGCAAGATAGCCAC
CAACGAGGTGGGCAAGATGCGGCTGAGCGACCTGGAGAAACAGGTGAAGC
TGTGCCTGGAGAACGGCTGGCAGCCGCTGATGGTATCGGCCACAGCGGGT
ACCACTGTGCTGGGCGCCTTCGATGATCTGGCTGGAATCTCGGAGGTGTG
CAAGAAGTACAACATGTGGATGCACGTGGATGCGGCTTGGGGTGGCGGTG
CGCTCATGTCCAAGAAGTATCGCCATCTGCTCAATGGCATCGAACGGGCT
GATTCGGTCACTTGGAATCCACACAAGCTGCTGGCTGCCTCGCAACAGTG
TTCCACCTTCCTGACGCGTCACCAGCAGGTGCTGGCCCAGTGCCATTCGA
CCAATGCGACATACTTGTTCCAGAAGGACAAGTTCTATGACACATCCTTC
GACACCGGCGACAAGCACATCCAGTGCGGCCGACGAGCGGATGTCTTCAA
GTTCTGGTTCATGTGGAAGGCGAAGGGCACCCAGGGTCTGGAGGCGCATG
TCGAGAAGGTCTTCCGCATGGCCGAGTTCTTCACGGCCAAGGTGAGGGAG
CGTCCTGGATTCGAGCTCGTCCTCGAGAGTCCCGAGTGCACCAACATTAG
CTTCTGGTATGTGCCGCCCGGTCTGCGGGAAATGGAGCGCAATCGCGAGT
TCTACGACCGTCTGCATAAGGTGGCGCCGAAGGTCAAGGAGGGCATGATC
AAGAAGGGCTCCATGATGATCACGTACCAGCCGTTGCGCCAGCTGCCCAA
CTTCTTTCGCCTGGTGCTGCAGAACTCCTGCCTGGAGGAGTCGGACATGG
TCTACTTTCTGGACGAGATCGAATCGCTCGCCCAAAACTTGGCAAGCTTT
CTAGACCAT

BO10472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
b-RB 1728 CG7811-PB 1..1725 17..1741 8625 100 Plus
b-RA 1728 CG7811-PA 1..1725 17..1741 8625 100 Plus
b-RC 1545 CG7811-PC 1..1542 200..1741 7710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
b-RC 2026 CG7811-RC 140..1864 17..1741 8625 100 Plus
b-RB 2135 CG7811-RB 140..1864 17..1741 8625 100 Plus
b-RA 2026 CG7811-RA 140..1864 17..1741 8625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13821387..13822148 17..778 3810 100 Plus
2L 23513712 2L 13823113..13823708 1146..1741 2980 100 Plus
2L 23513712 2L 13822680..13823050 777..1147 1855 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:22:48 has no hits.

BO10472.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:29 Download gff for BO10472.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 1..1728 17..1745 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:52 Download gff for BO10472.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 178..1912 9..1745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:08 Download gff for BO10472.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 140..1864 17..1743 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:29 Download gff for BO10472.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 178..1912 9..1745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:18 Download gff for BO10472.complete
Subject Subject Range Query Range Percent Splice Strand
b-RA 140..1864 17..1743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:18 Download gff for BO10472.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13821387..13822148 17..778 100 -> Plus
2L 13822682..13823049 779..1146 100 -> Plus
2L 13823114..13823708 1147..1743 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:08 Download gff for BO10472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13821387..13822148 17..778 100 -> Plus
arm_2L 13822682..13823049 779..1146 100 -> Plus
arm_2L 13823114..13823708 1147..1743 99   Plus

BO10472.pep Sequence

Translation from 16 to 1759

> BO10472.pep
MLASENFPTHHFKESIFKPYSTTSGDDLASVSPLTATAALVASTSSPADS
TSTVAFEQASKMLANAANNNNNNNNNITSTKDDLSSFVASHPAAEFEGFI
RACVDEIIKLAVFQGTNRSSKVVEWHEPAELRQLFDFQLREQGESQDKLR
ELLRETIRFSVKTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVA
PLFTLMEEQVLAEMRRIVGFPNGGQGDGIFCPGGSIANGYAISCARYRHS
PESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVRKIATNEVGK
MRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNM
WMHVDAAWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLT
RHQQVLAQCHSTNATYLFQKDKFYDTSFDTGDKHIQCGRRADVFKFWFMW
KAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVLESPECTNISFWYVP
PGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLV
LQNSCLEESDMVYFLDEIESLAQNLASFLDH

BO10472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
b-PB 575 CG7811-PB 1..575 1..575 3024 100 Plus
b-PA 575 CG7811-PA 1..575 1..575 3024 100 Plus
b-PC 514 CG7811-PC 1..514 62..575 2723 100 Plus
Gad1-PD 510 CG14994-PD 32..510 95..575 1097 43.7 Plus
Gad1-PC 510 CG14994-PC 32..510 95..575 1097 43.7 Plus