Clone Sequence Records
BO10472.3prime Sequence
888 bp (859 high quality bases) assembled on 2006-04-19
> BO10472.3prime
ATGGTCTAGAAAGCTTGCCAAGTTTTGGGCGAGCGATTCGATCTCGTCCA
GAAAGTAGACCATGTCCGACTCCTCCAGGCAGGAGTTCTGCAGCACCAGG
CGAAAGAAGTTGGGCAGCTGGCGCAACGGCTGGTACGTGATCATCATGGA
GCCCTTCTTGATCATGCCCTCCTTGACCTTCGGCGCCACCTTATGCAGAC
GGTCGTAGAACTCGCGATTGCGCTCCATTTCCCGCAGACCGGGCGGCACA
TACCAGAAGCTAATGTTGGTGCACTCGGGACTCTCGAGGACGAGCTCGAA
TCCAGGACGCTCCCTCACCTTGGCCGTGAAGAACTCGGCCATGCGGAAGA
CCTTCTCGACATGCGCCTCCAGACCCTGGGTGCCCTTCGCCTTCCACATG
AACCAGAACTTGAAGACATCCGCTCGTCGGCCGCACTGGATGTGCTTGTC
GCCGGTGTCGAAGGATGTGTCATAGAACTTGTCCTTCTGGAACAAGTATG
TCGCATTGGTCGAATGGCACTGGGCCAGCACCTGCTGGTGACGCGTCAGG
AAGGTGGAACACTGTTGCGAGGCAGCCAGCAGCTTGTGTGGATTCCAAGT
GACCGAATCAGCCCGTTCGATGCCATTGAGCAGATGGCGATACTTCTTGG
ACATGAGCGCACCGCCACCCCAAGCCGCATCCACGTGCATCCACATGTTG
TACTTCTTGCACACCTCCGAGATTCCAGCCAGATCATCGAAGGCGCCCAG
CACAGTGGTACCCGCTGTGGCCGATACCATCAGCGGCTGCCAGCCGTTCT
CCAGGCACAGCTTCACCTGTTTCTCCAGGTCGCTCAGCCGCATCTTGCCC
ACCTCGTTGGTGGCTATCTTGCGCACATGATCGCTGCC
BO10472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7811-PA | 1728 | b-RA | 856..1725 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
b-RC | 2026 | CG7811-RC | 995..1864 | 888..19 | 4350 | 100 | Minus |
b-RB | 2135 | CG7811-RB | 995..1864 | 888..19 | 4350 | 100 | Minus |
b-RA | 2026 | CG7811-RA | 995..1864 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13823113..13823708 | 614..19 | 2980 | 100 | Minus |
2L | 23513712 | 2L | 13822775..13823050 | 888..613 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:02:18 has no hits.
BO10472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:41:03 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:23 Download gff for
BO10472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7811-PA | 856..1728 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:51:47 Download gff for
BO10472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
b-RA | 995..1867 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:31 Download gff for
BO10472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
b-RA | 995..1867 | 15..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:31 Download gff for
BO10472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13822775..13823049 | 614..888 | 100 | -> | Minus |
2L | 13823114..13823714 | 14..613 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:51:47 Download gff for
BO10472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13822775..13823049 | 614..888 | 100 | -> | Minus |
arm_2L | 13823114..13823714 | 14..613 | 99 | -> | Minus |
BO10472.5prime Sequence
935 bp (844 high quality bases) assembled on 2006-04-19
> BO10472.5prime
GAAGTTATCAGTCGACATGCTGGCCAGCGAGAACTTTCCCACACATCACT
TCAAGGAATCTATATTTAAGCCGTACAGTACGACGAGTGGCGATGATTTG
GCAAGCGTTAGCCCATTGACAGCGACGGCAGCGTTGGTGGCGTCCACGTC
GTCACCGGCTGATTCCACCTCCACAGTTGCATTCGAGCAGGCCAGCAAAA
TGTTGGCCAACGCCGCCAACAATAATAATAATAATAATAACAACATCACG
AGCACCAAGGATGATCTATCCAGCTTTGTGGCCAGCCATCCGGCGGCAGA
GTTCGAGGGCTTCATCCGCGCTTGCGTCGACGAGATCATCAAGCTGGCCG
TCTTCCAGGGCACCAATCGCTCCTCGAAGGTCGTCGAGTGGCACGAGCCA
GCTGAGCTGCGACAGCTCTTTGACTTCCAGCTGCGGGAGCAGGGCGAATC
GCAGGACAAGCTGCGCGAGCTGCTGCGGGAAACGATTCGATTCTCCGTGA
AGACAGGACATCCGTACTTCATCAATCAGTTGTACTCGGGTGTGGATCCA
TACGCGCTGGTAGGTCAATGGCTCACCGATGCCCTCAATCCCAGCGTGTA
CACGTACGAGGTGGCTCCACTCTTTACGCTGATGGAGGAGCAGGTGTTGG
CCGAGATGCGACGCATTGTGGGCTTCCCCAATGGCGGCCAGGGTGATGGC
ATCTTCTGTCCCGGCGGCTCGATAGCCAACGGTTATGCAATCAGCTGCGC
CCGCTACAGACACTCGCCCGAGTCCAAGAAAAACGGACTCTTTAATGCCA
AGCCGCTGATTATCTTCACCTCGGAGGACGCGCACTACTCCGTGGAGAAG
CTGGCCATGTTCATGGGCTTCGGCAGCGATCATGTGCGCAAGATAGCCAA
CAACGAGGTGGGCAAGATGCGGCTGAGCGACCTGG
BO10472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7811-PA | 1728 | b-RA | 1..919 | 17..935 | 4570 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
b-RC | 2026 | CG7811-RC | 140..1058 | 17..935 | 4580 | 99.9 | Plus |
b-RB | 2135 | CG7811-RB | 140..1058 | 17..935 | 4580 | 99.9 | Plus |
b-RA | 2026 | CG7811-RA | 140..1058 | 17..935 | 4580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13821387..13822148 | 17..778 | 3810 | 100 | Plus |
2L | 23513712 | 2L | 13822680..13822838 | 777..935 | 780 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-13 00:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 4302..4408 | 311..426 | 145 | 62.9 | Plus |
BO10472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:41:04 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:24 Download gff for
BO10472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7811-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:01:26 Download gff for
BO10472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
b-RA | 133..1058 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:45 Download gff for
BO10472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
b-RA | 133..1058 | 9..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:45 Download gff for
BO10472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13821380..13822148 | 9..778 | 99 | -> | Plus |
2L | 13822682..13822838 | 779..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:01:26 Download gff for
BO10472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13821380..13822148 | 9..778 | 99 | -> | Plus |
arm_2L | 13822682..13822838 | 779..935 | 99 | | Plus |
BO10472.complete Sequence
1759 bp (1759 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631780
> BO10472.complete
GAAGTTATCAGTCGACATGCTGGCCAGCGAGAACTTTCCCACACATCACT
TCAAGGAATCTATATTTAAGCCGTACAGTACGACGAGTGGCGATGATTTG
GCAAGCGTTAGCCCATTGACAGCGACGGCAGCGTTGGTGGCGTCCACGTC
GTCACCGGCTGATTCCACCTCCACAGTTGCATTCGAGCAGGCCAGCAAAA
TGTTGGCCAACGCCGCCAACAATAATAATAATAATAATAACAACATCACG
AGCACCAAGGATGATCTATCCAGCTTTGTGGCCAGCCATCCGGCGGCAGA
GTTCGAGGGCTTCATCCGCGCTTGCGTCGACGAGATCATCAAGCTGGCCG
TCTTCCAGGGCACCAATCGCTCCTCGAAGGTCGTCGAGTGGCACGAGCCA
GCTGAGCTGCGACAGCTCTTTGACTTCCAGCTGCGGGAGCAGGGCGAATC
GCAGGACAAGCTGCGCGAGCTGCTGCGGGAAACGATTCGATTCTCCGTGA
AGACAGGACATCCGTACTTCATCAATCAGTTGTACTCGGGTGTGGATCCA
TACGCGCTGGTAGGTCAATGGCTCACCGATGCCCTCAATCCCAGCGTGTA
CACGTACGAGGTGGCTCCACTCTTTACGCTGATGGAGGAGCAGGTGTTGG
CCGAGATGCGACGCATTGTGGGCTTCCCCAATGGCGGCCAGGGTGATGGC
ATCTTCTGTCCCGGCGGCTCGATAGCCAACGGTTATGCAATCAGCTGCGC
CCGCTACAGACACTCGCCCGAGTCCAAGAAAAACGGACTCTTTAATGCCA
AGCCGCTGATTATCTTCACCTCGGAGGACGCGCACTACTCCGTGGAGAAG
CTGGCCATGTTCATGGGCTTCGGCAGCGATCATGTGCGCAAGATAGCCAC
CAACGAGGTGGGCAAGATGCGGCTGAGCGACCTGGAGAAACAGGTGAAGC
TGTGCCTGGAGAACGGCTGGCAGCCGCTGATGGTATCGGCCACAGCGGGT
ACCACTGTGCTGGGCGCCTTCGATGATCTGGCTGGAATCTCGGAGGTGTG
CAAGAAGTACAACATGTGGATGCACGTGGATGCGGCTTGGGGTGGCGGTG
CGCTCATGTCCAAGAAGTATCGCCATCTGCTCAATGGCATCGAACGGGCT
GATTCGGTCACTTGGAATCCACACAAGCTGCTGGCTGCCTCGCAACAGTG
TTCCACCTTCCTGACGCGTCACCAGCAGGTGCTGGCCCAGTGCCATTCGA
CCAATGCGACATACTTGTTCCAGAAGGACAAGTTCTATGACACATCCTTC
GACACCGGCGACAAGCACATCCAGTGCGGCCGACGAGCGGATGTCTTCAA
GTTCTGGTTCATGTGGAAGGCGAAGGGCACCCAGGGTCTGGAGGCGCATG
TCGAGAAGGTCTTCCGCATGGCCGAGTTCTTCACGGCCAAGGTGAGGGAG
CGTCCTGGATTCGAGCTCGTCCTCGAGAGTCCCGAGTGCACCAACATTAG
CTTCTGGTATGTGCCGCCCGGTCTGCGGGAAATGGAGCGCAATCGCGAGT
TCTACGACCGTCTGCATAAGGTGGCGCCGAAGGTCAAGGAGGGCATGATC
AAGAAGGGCTCCATGATGATCACGTACCAGCCGTTGCGCCAGCTGCCCAA
CTTCTTTCGCCTGGTGCTGCAGAACTCCTGCCTGGAGGAGTCGGACATGG
TCTACTTTCTGGACGAGATCGAATCGCTCGCCCAAAACTTGGCAAGCTTT
CTAGACCAT
BO10472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
b-RB | 1728 | CG7811-PB | 1..1725 | 17..1741 | 8625 | 100 | Plus |
b-RA | 1728 | CG7811-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
b-RC | 1545 | CG7811-PC | 1..1542 | 200..1741 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
b-RC | 2026 | CG7811-RC | 140..1864 | 17..1741 | 8625 | 100 | Plus |
b-RB | 2135 | CG7811-RB | 140..1864 | 17..1741 | 8625 | 100 | Plus |
b-RA | 2026 | CG7811-RA | 140..1864 | 17..1741 | 8625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13821387..13822148 | 17..778 | 3810 | 100 | Plus |
2L | 23513712 | 2L | 13823113..13823708 | 1146..1741 | 2980 | 100 | Plus |
2L | 23513712 | 2L | 13822680..13823050 | 777..1147 | 1855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:22:48 has no hits.
BO10472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:29 Download gff for
BO10472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
b-RA | 1..1728 | 17..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:52 Download gff for
BO10472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
b-RA | 178..1912 | 9..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:08 Download gff for
BO10472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
b-RA | 140..1864 | 17..1743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:29 Download gff for
BO10472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
b-RA | 178..1912 | 9..1745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:18 Download gff for
BO10472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
b-RA | 140..1864 | 17..1743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:18 Download gff for
BO10472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13821387..13822148 | 17..778 | 100 | -> | Plus |
2L | 13822682..13823049 | 779..1146 | 100 | -> | Plus |
2L | 13823114..13823708 | 1147..1743 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:08 Download gff for
BO10472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13821387..13822148 | 17..778 | 100 | -> | Plus |
arm_2L | 13822682..13823049 | 779..1146 | 100 | -> | Plus |
arm_2L | 13823114..13823708 | 1147..1743 | 99 | | Plus |
BO10472.pep Sequence
Translation from 16 to 1759
> BO10472.pep
MLASENFPTHHFKESIFKPYSTTSGDDLASVSPLTATAALVASTSSPADS
TSTVAFEQASKMLANAANNNNNNNNNITSTKDDLSSFVASHPAAEFEGFI
RACVDEIIKLAVFQGTNRSSKVVEWHEPAELRQLFDFQLREQGESQDKLR
ELLRETIRFSVKTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVA
PLFTLMEEQVLAEMRRIVGFPNGGQGDGIFCPGGSIANGYAISCARYRHS
PESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVRKIATNEVGK
MRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNM
WMHVDAAWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLT
RHQQVLAQCHSTNATYLFQKDKFYDTSFDTGDKHIQCGRRADVFKFWFMW
KAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVLESPECTNISFWYVP
PGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLV
LQNSCLEESDMVYFLDEIESLAQNLASFLDH
BO10472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
b-PB | 575 | CG7811-PB | 1..575 | 1..575 | 3024 | 100 | Plus |
b-PA | 575 | CG7811-PA | 1..575 | 1..575 | 3024 | 100 | Plus |
b-PC | 514 | CG7811-PC | 1..514 | 62..575 | 2723 | 100 | Plus |
Gad1-PD | 510 | CG14994-PD | 32..510 | 95..575 | 1097 | 43.7 | Plus |
Gad1-PC | 510 | CG14994-PC | 32..510 | 95..575 | 1097 | 43.7 | Plus |