Clone BO10473 Report

Search the DGRC for BO10473

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG9328-RB
Protein status:BO10473.pep: validated full length
Sequenced Size:463

Clone Sequence Records

BO10473.3prime Sequence

461 bp (460 high quality bases) assembled on 2006-04-19

> BO10473.3prime
ATGGTCTAGAAAGCTTGCATTGTTGGCGTGCGCCGTGCGCAGCTTGGCCC
GCACGTTCAGATACTCGGGATTCACGTACTGCCGCTCCTCGGCGTCCTCC
TGATCCTGCTTCTGAGCCGCCGCCTCATGCTTCTGCGCCCGCTCCATGAT
CACGCGCCCGAGTTCTCCTTTCAGTCCTGGAATCCCGCCGACAATGTCCG
CATCCGGCGAATGTTGCTCGGCCGCGGCATGCCGCTCCTTTTGCTTGTCG
TAGGCACGTTGCAATTCTGATTTCTGGTTCAGCACGCTCTTTCCCACTCT
GGCATTGAACTTGAGCTCCCGGTGCAACTCCTTGCGATCGATGTTCTCCA
TGCAGGGATTGATGAGCTTCTTAGGCAGGATCAGCCCGTCGGAGTCCGTC
TGGACGCCAGTGGGTGTGGCCGGCGGGGAGCTGGTCATGGACATCATGTC
GACTGATAACT

BO10473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-PB 432 CG9328-RB 1..429 447..19 2070 99.3 Minus
CG9328-PA 543 CG9328-RA 112..540 447..19 2070 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-RA 1501 CG9328-RA 451..879 447..19 2100 99.3 Minus
CG9328-RB 1600 CG9328-RB 851..1279 447..19 2100 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20813433..20813709 295..19 1340 98.9 Minus
2L 23513712 2L 20813206..20813358 447..295 765 100 Minus
Blast to na_te.dros performed on 2015-02-09 02:14:22 has no hits.

BO10473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:05 Download gff for BO10473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-PB 1..432 15..447 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:26 Download gff for BO10473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-PA 112..543 15..447 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:44:32 Download gff for BO10473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1283 14..447 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:19:25 Download gff for BO10473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1283 14..447 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:19:25 Download gff for BO10473.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20813206..20813357 296..447 100 -> Minus
2L 20813433..20813713 14..295 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:44:32 Download gff for BO10473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20813206..20813357 296..447 100 -> Minus
arm_2L 20813433..20813713 14..295 98   Minus

BO10473.5prime Sequence

461 bp (460 high quality bases) assembled on 2006-04-19

> BO10473.5prime
GAAGTTATCAGTCGACATGATGTCCATGACCAGCTCCCCGCCGGCCACAC
CCACTGGCGTCCAGACGGACTCCGACGGGCTGATCCTGCCTAAGAAGCTC
ATCAATCCCTGCATGGAGAACATCGATCGCAAGGAGTTGCACCGGGAGCT
CAAGTTCAATGCCAGAGTGGGAAAGAGCGTGCTGAACCAGAAATCAGAAT
TGCAACGTGCCTACGACAAGCAAAAGGAGCGGCATGCCGCGGCCGAGCAA
CATTCGCCGGATGCGGACATTGTCGGCGGGATTCCAGGACTGAAAGGAGA
ACTCGGGCGCGTGATCATGGAGCGGGCGCAGAAGCATGAGGCGGCGGCTC
AGAAGCAGGATCAGGAGGACGCCGAGGAGCGGCAGTACGTGAATCCCGAG
TATCTGAACGTGCGGGCCAAGCTGCGCACGGCGCACGCCAACAATGCAAG
CTTTCTAGACC

BO10473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-PB 432 CG9328-RB 1..429 17..445 2070 99.3 Plus
CG9328-PA 543 CG9328-RA 112..540 17..445 2070 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-RA 1501 CG9328-RA 451..879 17..445 2100 99.3 Plus
CG9328-RB 1600 CG9328-RB 851..1279 17..445 2100 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20813433..20813709 169..445 1340 98.9 Plus
2L 23513712 2L 20813206..20813358 17..169 765 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:36:11 has no hits.

BO10473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:06 Download gff for BO10473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-PB 1..432 17..449 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:27 Download gff for BO10473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-PA 112..543 17..449 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:20 Download gff for BO10473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1283 17..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:41 Download gff for BO10473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1283 17..450 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:41 Download gff for BO10473.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20813206..20813357 17..168 100 -> Plus
2L 20813433..20813713 169..450 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:20 Download gff for BO10473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20813206..20813357 17..168 100 -> Plus
arm_2L 20813433..20813713 169..450 98   Plus

BO10473.complete Sequence

463 bp (463 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631781

> BO10473.complete
GAAGTTATCAGTCGACATGATGTCCATGACCAGCTCCCCGCCGGCCACAC
CCACTGGCGTCCAGACGGACTCCGACGGGCTGATCCTGCCTAAGAAGCTC
ATCAATCCCTGCATGGAGAACATCGATCGCAAGGAGTTGCACCGGGAGCT
CAAGTTCAATGCCAGAGTGGGAAAGAGCGTGCTGAACCAGAAATCAGAAT
TGCAACGTGCCTACGACAAGCAAAAGGAGCGGCATGCCGCGGCCGAGCAA
CATTCGCCGGATGCGGACATTGTCGGCGGGATTCCAGGACTGAAAGGAGA
ACTCGGGCGCGTGATCATGGAGCGGGCGCAGAAGCATGAGGCGGCGGCTC
AGAAGCAGGATCAGGAGGACGCCGAGGAGCGGCAGTACGTGAATCCCGAG
TATCTGAACGTGCGGGCCAAGCTGCGCACGGCGCACGCCAACAATGCAAG
CTTTCTAGACCAT

BO10473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-RA 543 CG9328-PA 112..540 17..445 2100 99.3 Plus
CG9328-RB 432 CG9328-PB 1..429 17..445 2100 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-RA 1501 CG9328-RA 451..879 17..445 2100 99.3 Plus
CG9328-RB 1600 CG9328-RB 851..1279 17..445 2100 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20813433..20813709 169..445 1340 98.9 Plus
2L 23513712 2L 20813206..20813358 17..169 765 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:31:48 has no hits.

BO10473.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:03 Download gff for BO10473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RA 112..543 17..449 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:46 Download gff for BO10473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 835..1267 17..450 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:30 Download gff for BO10473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1279 17..447 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:03 Download gff for BO10473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 835..1267 17..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:07 Download gff for BO10473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1279 17..447 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:07 Download gff for BO10473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20813206..20813357 17..168 100 -> Plus
2L 20813433..20813709 169..447 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:30 Download gff for BO10473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20813206..20813357 17..168 100 -> Plus
arm_2L 20813433..20813709 169..447 98   Plus

BO10473.pep Sequence

Translation from 16 to 463

> BO10473.pep
MMSMTSSPPATPTGVQTDSDGLILPKKLINPCMENIDRKELHRELKFNAR
VGKSVLNQKSELQRAYDKQKERHAAAEQHSPDADIVGGIPGLKGELGRVI
MERAQKHEAAAQKQDQEDAEERQYVNPEYLNVRAKLRTAHANNASFLDH

BO10473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-PB 143 CG9328-PB 1..143 1..143 735 100 Plus
CG9328-PA 180 CG9328-PA 38..180 1..143 735 100 Plus