Clone Sequence Records
BO10473.3prime Sequence
461 bp (460 high quality bases) assembled on 2006-04-19
> BO10473.3prime
ATGGTCTAGAAAGCTTGCATTGTTGGCGTGCGCCGTGCGCAGCTTGGCCC
GCACGTTCAGATACTCGGGATTCACGTACTGCCGCTCCTCGGCGTCCTCC
TGATCCTGCTTCTGAGCCGCCGCCTCATGCTTCTGCGCCCGCTCCATGAT
CACGCGCCCGAGTTCTCCTTTCAGTCCTGGAATCCCGCCGACAATGTCCG
CATCCGGCGAATGTTGCTCGGCCGCGGCATGCCGCTCCTTTTGCTTGTCG
TAGGCACGTTGCAATTCTGATTTCTGGTTCAGCACGCTCTTTCCCACTCT
GGCATTGAACTTGAGCTCCCGGTGCAACTCCTTGCGATCGATGTTCTCCA
TGCAGGGATTGATGAGCTTCTTAGGCAGGATCAGCCCGTCGGAGTCCGTC
TGGACGCCAGTGGGTGTGGCCGGCGGGGAGCTGGTCATGGACATCATGTC
GACTGATAACT
BO10473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-PB | 432 | CG9328-RB | 1..429 | 447..19 | 2070 | 99.3 | Minus |
CG9328-PA | 543 | CG9328-RA | 112..540 | 447..19 | 2070 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-RA | 1501 | CG9328-RA | 451..879 | 447..19 | 2100 | 99.3 | Minus |
CG9328-RB | 1600 | CG9328-RB | 851..1279 | 447..19 | 2100 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20813433..20813709 | 295..19 | 1340 | 98.9 | Minus |
2L | 23513712 | 2L | 20813206..20813358 | 447..295 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:14:22 has no hits.
BO10473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:05 Download gff for
BO10473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-PB | 1..432 | 15..447 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:26 Download gff for
BO10473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-PA | 112..543 | 15..447 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:44:32 Download gff for
BO10473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1283 | 14..447 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:19:25 Download gff for
BO10473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1283 | 14..447 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:19:25 Download gff for
BO10473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20813206..20813357 | 296..447 | 100 | -> | Minus |
2L | 20813433..20813713 | 14..295 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:44:32 Download gff for
BO10473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20813206..20813357 | 296..447 | 100 | -> | Minus |
arm_2L | 20813433..20813713 | 14..295 | 98 | | Minus |
BO10473.5prime Sequence
461 bp (460 high quality bases) assembled on 2006-04-19
> BO10473.5prime
GAAGTTATCAGTCGACATGATGTCCATGACCAGCTCCCCGCCGGCCACAC
CCACTGGCGTCCAGACGGACTCCGACGGGCTGATCCTGCCTAAGAAGCTC
ATCAATCCCTGCATGGAGAACATCGATCGCAAGGAGTTGCACCGGGAGCT
CAAGTTCAATGCCAGAGTGGGAAAGAGCGTGCTGAACCAGAAATCAGAAT
TGCAACGTGCCTACGACAAGCAAAAGGAGCGGCATGCCGCGGCCGAGCAA
CATTCGCCGGATGCGGACATTGTCGGCGGGATTCCAGGACTGAAAGGAGA
ACTCGGGCGCGTGATCATGGAGCGGGCGCAGAAGCATGAGGCGGCGGCTC
AGAAGCAGGATCAGGAGGACGCCGAGGAGCGGCAGTACGTGAATCCCGAG
TATCTGAACGTGCGGGCCAAGCTGCGCACGGCGCACGCCAACAATGCAAG
CTTTCTAGACC
BO10473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-PB | 432 | CG9328-RB | 1..429 | 17..445 | 2070 | 99.3 | Plus |
CG9328-PA | 543 | CG9328-RA | 112..540 | 17..445 | 2070 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-RA | 1501 | CG9328-RA | 451..879 | 17..445 | 2100 | 99.3 | Plus |
CG9328-RB | 1600 | CG9328-RB | 851..1279 | 17..445 | 2100 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20813433..20813709 | 169..445 | 1340 | 98.9 | Plus |
2L | 23513712 | 2L | 20813206..20813358 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:36:11 has no hits.
BO10473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:06 Download gff for
BO10473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-PB | 1..432 | 17..449 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:27 Download gff for
BO10473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-PA | 112..543 | 17..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:20 Download gff for
BO10473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1283 | 17..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:41 Download gff for
BO10473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1283 | 17..450 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:41 Download gff for
BO10473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20813206..20813357 | 17..168 | 100 | -> | Plus |
2L | 20813433..20813713 | 169..450 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:20 Download gff for
BO10473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20813206..20813357 | 17..168 | 100 | -> | Plus |
arm_2L | 20813433..20813713 | 169..450 | 98 | | Plus |
BO10473.complete Sequence
463 bp (463 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631781
> BO10473.complete
GAAGTTATCAGTCGACATGATGTCCATGACCAGCTCCCCGCCGGCCACAC
CCACTGGCGTCCAGACGGACTCCGACGGGCTGATCCTGCCTAAGAAGCTC
ATCAATCCCTGCATGGAGAACATCGATCGCAAGGAGTTGCACCGGGAGCT
CAAGTTCAATGCCAGAGTGGGAAAGAGCGTGCTGAACCAGAAATCAGAAT
TGCAACGTGCCTACGACAAGCAAAAGGAGCGGCATGCCGCGGCCGAGCAA
CATTCGCCGGATGCGGACATTGTCGGCGGGATTCCAGGACTGAAAGGAGA
ACTCGGGCGCGTGATCATGGAGCGGGCGCAGAAGCATGAGGCGGCGGCTC
AGAAGCAGGATCAGGAGGACGCCGAGGAGCGGCAGTACGTGAATCCCGAG
TATCTGAACGTGCGGGCCAAGCTGCGCACGGCGCACGCCAACAATGCAAG
CTTTCTAGACCAT
BO10473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-RA | 543 | CG9328-PA | 112..540 | 17..445 | 2100 | 99.3 | Plus |
CG9328-RB | 432 | CG9328-PB | 1..429 | 17..445 | 2100 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-RA | 1501 | CG9328-RA | 451..879 | 17..445 | 2100 | 99.3 | Plus |
CG9328-RB | 1600 | CG9328-RB | 851..1279 | 17..445 | 2100 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20813433..20813709 | 169..445 | 1340 | 98.9 | Plus |
2L | 23513712 | 2L | 20813206..20813358 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:31:48 has no hits.
BO10473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:03 Download gff for
BO10473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RA | 112..543 | 17..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:46 Download gff for
BO10473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 835..1267 | 17..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:30 Download gff for
BO10473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1279 | 17..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:03 Download gff for
BO10473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 835..1267 | 17..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:07 Download gff for
BO10473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1279 | 17..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:07 Download gff for
BO10473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20813206..20813357 | 17..168 | 100 | -> | Plus |
2L | 20813433..20813709 | 169..447 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:30 Download gff for
BO10473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20813206..20813357 | 17..168 | 100 | -> | Plus |
arm_2L | 20813433..20813709 | 169..447 | 98 | | Plus |
BO10473.pep Sequence
Translation from 16 to 463
> BO10473.pep
MMSMTSSPPATPTGVQTDSDGLILPKKLINPCMENIDRKELHRELKFNAR
VGKSVLNQKSELQRAYDKQKERHAAAEQHSPDADIVGGIPGLKGELGRVI
MERAQKHEAAAQKQDQEDAEERQYVNPEYLNVRAKLRTAHANNASFLDH
BO10473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-PB | 143 | CG9328-PB | 1..143 | 1..143 | 735 | 100 | Plus |
CG9328-PA | 180 | CG9328-PA | 38..180 | 1..143 | 735 | 100 | Plus |