Clone Sequence Records
BO10474.3prime Sequence
641 bp (640 high quality bases) assembled on 2006-04-19
> BO10474.3prime
ATGGTCTAGAAAGCTTGCGGGTACATCGTAACTGGCGTTCCCGTCCGTAT
CCTTTTCATGTAGCTGGACGAGGAAAAGCCGCTTGTGCTCCTTGGGCTTG
GTGATGTGCGGCGGAATGTATGGATATTGCGGTGGCTCAAAGTTCGGCCG
CCACCAGTTCCCAATCGTGTCCTCAACAATCCACTCCTGCTTTACGCCGT
CCTGACGACCCAGCGTCTCGGATAGCAATCTCTTGAGGCCCTCGACCTCA
TCCTCGCCGGCGTTTAGCTCGCCACCGGGCAATTTGAAGAACGTGGTGCC
CAGCTGCAGGAGCAAGACATGTGGCAGTCCGTGCTCGTGGACCAGAAGCA
CTCCCTCGACGGAGCGCCGCATTCCGATCCGGTCGAATTCCTCGCGCATC
CGCTGGAATCGGGATGGCACCGACGGATCCTTCTCAAAGAGCGGCTCCTT
GGTGCCGAATGTGTAGTTCGTAAGGGGGTATAAGTTGATGGTGCGATTGA
TGGTTAGCGCCTGGTTGGTGTACTTCTGGGTACCGTTGTTATTGCTGCTG
GCTGCATCCGCTTGGCCTTGGCTTCCGCGGCGCGGCCAACCGGAGCCCGA
TTTGTTTGAGACTTGCGAGGACGCCATGTCGACTGATAACT
BO10474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-PB | 612 | CG3689-RB | 1..609 | 627..19 | 3045 | 100 | Minus |
CG3689-PC | 714 | CG3689-RC | 1..577 | 627..51 | 2885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-RB | 2225 | CG3689-RB | 239..847 | 627..19 | 3045 | 100 | Minus |
CG3689-RC | 1177 | CG3689-RC | 239..815 | 627..51 | 2885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9411479..9411743 | 481..217 | 1325 | 100 | Minus |
3L | 28110227 | 3L | 9411815..9411982 | 218..51 | 840 | 100 | Minus |
3L | 28110227 | 3L | 9411276..9411421 | 627..482 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:08:55 has no hits.
BO10474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:07 Download gff for
BO10474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-PB | 1..612 | 16..627 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:29 Download gff for
BO10474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-PB | 1..612 | 16..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:52:42 Download gff for
BO10474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..852 | 13..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:14 Download gff for
BO10474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..852 | 13..627 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:14 Download gff for
BO10474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9411479..9411743 | 217..481 | 100 | -> | Minus |
3L | 9411817..9411982 | 51..216 | 100 | -> | Minus |
3L | 9412155..9412191 | 13..50 | 92 | | Minus |
3L | 9411276..9411421 | 482..627 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:52:42 Download gff for
BO10474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9404376..9404521 | 482..627 | 100 | -> | Minus |
arm_3L | 9404579..9404843 | 217..481 | 100 | -> | Minus |
arm_3L | 9404917..9405082 | 51..216 | 100 | -> | Minus |
arm_3L | 9405255..9405291 | 13..50 | 92 | | Minus |
BO10474.5prime Sequence
641 bp (640 high quality bases) assembled on 2006-04-19
> BO10474.5prime
GAAGTTATCAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCT
CCGGTTGGCCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGC
AATAACAACGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCG
CACCATCAACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGC
CGCTCTTTGAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGC
GAGGAATTCGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCT
GGTCCACGAGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCA
CGTTCTTCAAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTC
GAGGGCCTCAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGT
AAAGCAGGAGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGA
ACTTTGAGCCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCC
AAGGAGCACAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGA
CGGGAACGCCAGTTACGATGTACCCGCAAGCTTTCTAGACC
BO10474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-PB | 612 | CG3689-RB | 1..609 | 17..625 | 3045 | 100 | Plus |
CG3689-PC | 714 | CG3689-RC | 1..577 | 17..593 | 2885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-RB | 2225 | CG3689-RB | 239..847 | 17..625 | 3045 | 100 | Plus |
CG3689-RC | 1177 | CG3689-RC | 239..815 | 17..593 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9411479..9411743 | 163..427 | 1325 | 100 | Plus |
3L | 28110227 | 3L | 9411815..9411982 | 426..593 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9411276..9411421 | 17..162 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:03:11 has no hits.
BO10474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:08 Download gff for
BO10474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-PB | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:30 Download gff for
BO10474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-PB | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:14 Download gff for
BO10474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..852 | 17..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:23 Download gff for
BO10474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..852 | 17..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:23 Download gff for
BO10474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9411479..9411743 | 163..427 | 100 | -> | Plus |
3L | 9411817..9411982 | 428..593 | 100 | -> | Plus |
3L | 9412155..9412191 | 594..631 | 92 | | Plus |
3L | 9411276..9411421 | 17..162 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:14 Download gff for
BO10474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9404376..9404521 | 17..162 | 100 | -> | Plus |
arm_3L | 9404579..9404843 | 163..427 | 100 | -> | Plus |
arm_3L | 9404917..9405082 | 428..593 | 100 | -> | Plus |
arm_3L | 9405255..9405291 | 594..631 | 92 | | Plus |
BO10474.complete Sequence
643 bp (643 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631782
> BO10474.complete
GAAGTTATCAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCT
CCGGTTGGCCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGC
AATAACAACGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCG
CACCATCAACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGC
CGCTCTTTGAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGC
GAGGAATTCGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCT
GGTCCACGAGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCA
CGTTCTTCAAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTC
GAGGGCCTCAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGT
AAAGCAGGAGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGA
ACTTTGAGCCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCC
AAGGAGCACAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGA
CGGGAACGCCAGTTACGATGTACCCGCAAGCTTTCTAGACCAT
BO10474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-RB | 612 | CG3689-PB | 1..609 | 17..625 | 3045 | 100 | Plus |
CG3689-RC | 714 | CG3689-PC | 1..577 | 17..593 | 2885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-RB | 2225 | CG3689-RB | 239..847 | 17..625 | 3045 | 100 | Plus |
CG3689-RC | 1177 | CG3689-RC | 239..815 | 17..593 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9411479..9411743 | 163..427 | 1325 | 100 | Plus |
3L | 28110227 | 3L | 9411815..9411982 | 426..593 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9411276..9411421 | 17..162 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:51:04 has no hits.
BO10474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:53 Download gff for
BO10474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:59 Download gff for
BO10474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 218..831 | 17..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:25 Download gff for
BO10474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..847 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:53 Download gff for
BO10474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 218..831 | 17..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:05 Download gff for
BO10474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..847 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:05 Download gff for
BO10474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9412155..9412186 | 594..627 | 94 | | Plus |
3L | 9411479..9411743 | 163..427 | 100 | -> | Plus |
3L | 9411276..9411421 | 17..162 | 100 | -> | Plus |
3L | 9411817..9411982 | 428..593 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:25 Download gff for
BO10474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9404376..9404521 | 17..162 | 100 | -> | Plus |
arm_3L | 9404579..9404843 | 163..427 | 100 | -> | Plus |
arm_3L | 9404917..9405082 | 428..593 | 100 | -> | Plus |
arm_3L | 9405255..9405286 | 594..627 | 94 | | Plus |
BO10474.pep Sequence
Translation from 16 to 643
> BO10474.pep
MASSQVSNKSGSGWPRRGSQGQADAASSNNNGTQKYTNQALTINRTINLY
PLTNYTFGTKEPLFEKDPSVPSRFQRMREEFDRIGMRRSVEGVLLVHEHG
LPHVLLLQLGTTFFKLPGGELNAGEDEVEGLKRLLSETLGRQDGVKQEWI
VEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLHEKDTDGNASY
DVPASFLDH
BO10474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-PB | 203 | CG3689-PB | 1..203 | 1..203 | 1088 | 100 | Plus |
CG3689-PC | 237 | CG3689-PC | 1..201 | 1..206 | 1028 | 94.7 | Plus |