Clone BO10474 Report

Search the DGRC for BO10474

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG3689-RB
Protein status:BO10474.pep: validated full length
Sequenced Size:643

Clone Sequence Records

BO10474.3prime Sequence

641 bp (640 high quality bases) assembled on 2006-04-19

> BO10474.3prime
ATGGTCTAGAAAGCTTGCGGGTACATCGTAACTGGCGTTCCCGTCCGTAT
CCTTTTCATGTAGCTGGACGAGGAAAAGCCGCTTGTGCTCCTTGGGCTTG
GTGATGTGCGGCGGAATGTATGGATATTGCGGTGGCTCAAAGTTCGGCCG
CCACCAGTTCCCAATCGTGTCCTCAACAATCCACTCCTGCTTTACGCCGT
CCTGACGACCCAGCGTCTCGGATAGCAATCTCTTGAGGCCCTCGACCTCA
TCCTCGCCGGCGTTTAGCTCGCCACCGGGCAATTTGAAGAACGTGGTGCC
CAGCTGCAGGAGCAAGACATGTGGCAGTCCGTGCTCGTGGACCAGAAGCA
CTCCCTCGACGGAGCGCCGCATTCCGATCCGGTCGAATTCCTCGCGCATC
CGCTGGAATCGGGATGGCACCGACGGATCCTTCTCAAAGAGCGGCTCCTT
GGTGCCGAATGTGTAGTTCGTAAGGGGGTATAAGTTGATGGTGCGATTGA
TGGTTAGCGCCTGGTTGGTGTACTTCTGGGTACCGTTGTTATTGCTGCTG
GCTGCATCCGCTTGGCCTTGGCTTCCGCGGCGCGGCCAACCGGAGCCCGA
TTTGTTTGAGACTTGCGAGGACGCCATGTCGACTGATAACT

BO10474.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-PB 612 CG3689-RB 1..609 627..19 3045 100 Minus
CG3689-PC 714 CG3689-RC 1..577 627..51 2885 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-RB 2225 CG3689-RB 239..847 627..19 3045 100 Minus
CG3689-RC 1177 CG3689-RC 239..815 627..51 2885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9411479..9411743 481..217 1325 100 Minus
3L 28110227 3L 9411815..9411982 218..51 840 100 Minus
3L 28110227 3L 9411276..9411421 627..482 730 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:08:55 has no hits.

BO10474.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:07 Download gff for BO10474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-PB 1..612 16..627 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:29 Download gff for BO10474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-PB 1..612 16..627 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:52:42 Download gff for BO10474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..852 13..627 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:14 Download gff for BO10474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..852 13..627 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:14 Download gff for BO10474.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9411479..9411743 217..481 100 -> Minus
3L 9411817..9411982 51..216 100 -> Minus
3L 9412155..9412191 13..50 92   Minus
3L 9411276..9411421 482..627 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:52:42 Download gff for BO10474.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9404376..9404521 482..627 100 -> Minus
arm_3L 9404579..9404843 217..481 100 -> Minus
arm_3L 9404917..9405082 51..216 100 -> Minus
arm_3L 9405255..9405291 13..50 92   Minus

BO10474.5prime Sequence

641 bp (640 high quality bases) assembled on 2006-04-19

> BO10474.5prime
GAAGTTATCAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCT
CCGGTTGGCCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGC
AATAACAACGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCG
CACCATCAACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGC
CGCTCTTTGAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGC
GAGGAATTCGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCT
GGTCCACGAGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCA
CGTTCTTCAAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTC
GAGGGCCTCAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGT
AAAGCAGGAGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGA
ACTTTGAGCCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCC
AAGGAGCACAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGA
CGGGAACGCCAGTTACGATGTACCCGCAAGCTTTCTAGACC

BO10474.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-PB 612 CG3689-RB 1..609 17..625 3045 100 Plus
CG3689-PC 714 CG3689-RC 1..577 17..593 2885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-RB 2225 CG3689-RB 239..847 17..625 3045 100 Plus
CG3689-RC 1177 CG3689-RC 239..815 17..593 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9411479..9411743 163..427 1325 100 Plus
3L 28110227 3L 9411815..9411982 426..593 840 100 Plus
3L 28110227 3L 9411276..9411421 17..162 730 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:03:11 has no hits.

BO10474.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:08 Download gff for BO10474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-PB 1..612 17..628 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:30 Download gff for BO10474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-PB 1..612 17..628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:14 Download gff for BO10474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..852 17..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:23 Download gff for BO10474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..852 17..631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:23 Download gff for BO10474.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9411479..9411743 163..427 100 -> Plus
3L 9411817..9411982 428..593 100 -> Plus
3L 9412155..9412191 594..631 92   Plus
3L 9411276..9411421 17..162 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:14 Download gff for BO10474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9404376..9404521 17..162 100 -> Plus
arm_3L 9404579..9404843 163..427 100 -> Plus
arm_3L 9404917..9405082 428..593 100 -> Plus
arm_3L 9405255..9405291 594..631 92   Plus

BO10474.complete Sequence

643 bp (643 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631782

> BO10474.complete
GAAGTTATCAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCT
CCGGTTGGCCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGC
AATAACAACGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCG
CACCATCAACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGC
CGCTCTTTGAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGC
GAGGAATTCGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCT
GGTCCACGAGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCA
CGTTCTTCAAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTC
GAGGGCCTCAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGT
AAAGCAGGAGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGA
ACTTTGAGCCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCC
AAGGAGCACAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGA
CGGGAACGCCAGTTACGATGTACCCGCAAGCTTTCTAGACCAT

BO10474.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-RB 612 CG3689-PB 1..609 17..625 3045 100 Plus
CG3689-RC 714 CG3689-PC 1..577 17..593 2885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-RB 2225 CG3689-RB 239..847 17..625 3045 100 Plus
CG3689-RC 1177 CG3689-RC 239..815 17..593 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9411479..9411743 163..427 1325 100 Plus
3L 28110227 3L 9411815..9411982 426..593 840 100 Plus
3L 28110227 3L 9411276..9411421 17..162 730 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:51:04 has no hits.

BO10474.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:53 Download gff for BO10474.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 1..612 17..628 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:59 Download gff for BO10474.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 218..831 17..631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:25 Download gff for BO10474.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..847 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:53 Download gff for BO10474.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 218..831 17..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:05 Download gff for BO10474.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..847 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:05 Download gff for BO10474.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9412155..9412186 594..627 94   Plus
3L 9411479..9411743 163..427 100 -> Plus
3L 9411276..9411421 17..162 100 -> Plus
3L 9411817..9411982 428..593 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:25 Download gff for BO10474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9404376..9404521 17..162 100 -> Plus
arm_3L 9404579..9404843 163..427 100 -> Plus
arm_3L 9404917..9405082 428..593 100 -> Plus
arm_3L 9405255..9405286 594..627 94   Plus

BO10474.pep Sequence

Translation from 16 to 643

> BO10474.pep
MASSQVSNKSGSGWPRRGSQGQADAASSNNNGTQKYTNQALTINRTINLY
PLTNYTFGTKEPLFEKDPSVPSRFQRMREEFDRIGMRRSVEGVLLVHEHG
LPHVLLLQLGTTFFKLPGGELNAGEDEVEGLKRLLSETLGRQDGVKQEWI
VEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLHEKDTDGNASY
DVPASFLDH

BO10474.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-PB 203 CG3689-PB 1..203 1..203 1088 100 Plus
CG3689-PC 237 CG3689-PC 1..201 1..206 1028 94.7 Plus