Clone BO10477 Report

Search the DGRC for BO10477

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptSwip-1-RA
Protein status:BO10477.pep: validated full length
Sequenced Size:685

Clone Sequence Records

BO10477.3prime Sequence

683 bp (682 high quality bases) assembled on 2006-04-19

> BO10477.3prime
ATGGTCTAGAAAGCTTGCCTGGAAGATCGCTGCCCGCTGCTGGAACTGCT
GACGCCGCTGGGCCCGCTCCTCCTCCTCTCGCCGGCGCTCCTCCTGCTCC
GCCCGAATCTCGTCGTGGAACTTGTTCGTCCGCAGCTGTTGCTCAATTTT
CGCCTCGAAGAAGTTCTTGGCTCCGCTCACTCCCACCTGCTCCACATCGA
CCTCCGTGAGGCGGGCCAGCTGATTCAGCCCAGAATCGGAGTCCAGTTCC
CCGGCCTGGGCCTTCCTGAAGATCAGCAAGAACTCTCGGAATGAAATCTT
GCCATCGTTATCCTCGTCCACCTCGGCAATCATCTGCTTGAGTCCCAGAT
GGGTTTGCGGAGCGCCCAGCTTCTCCATCATGAACTTCAGCTCCTGCAGG
TCCAAGAAGCCATCACGAGCCGTATCGTATGTATTGAAGGTCTTCTGGTA
GTCCTTGATCTGGTTACGGGAGAACTCGGGGAAGTCGGTGTAGACGTTGA
CCACTTTGTAGGTGCGACGCACCTCGATGCCCGCCTCCTGGGACTCCATG
ATCTCCTGGCGCCGATTGAGGATGTGCGTCAGCTCGGAGCTGTCCGTGTT
GGTGGTGCTGCTGGGGCTGTCCACGCTGTCCTTGTTGGAGGCGGATGAGG
CGTTCGAGGAAACGGACATGTCGACTGATAACT

BO10477.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10641-PA 654 CG10641-RA 1..651 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-RB 1860 CG10641-RB 371..1021 669..19 3255 100 Minus
Swip-1-RA 1628 CG10641-RA 371..1021 669..19 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18978358..18978769 19..430 2060 100 Plus
2L 23513712 2L 18986672..18986910 431..669 1195 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:02:03 has no hits.

BO10477.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:13 Download gff for BO10477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10641-PA 1..654 18..669 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:36 Download gff for BO10477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10641-PA 1..654 18..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:51:45 Download gff for BO10477.3prime
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1021 19..669 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:29 Download gff for BO10477.3prime
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1021 19..669 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:29 Download gff for BO10477.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18978358..18978769 19..430 100 <- Plus
2L 18986672..18986910 431..669 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:51:45 Download gff for BO10477.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18978358..18978769 19..430 100 <- Plus
arm_2L 18986672..18986910 431..669 100   Plus

BO10477.5prime Sequence

683 bp (682 high quality bases) assembled on 2006-04-19

> BO10477.5prime
GAAGTTATCAGTCGACATGTCCGTTTCCTCGAACGCCTCATCCGCCTCCA
ACAAGGACAGCGTGGACAGCCCCAGCAGCACCACCAACACGGACAGCTCC
GAGCTGACGCACATCCTCAATCGGCGCCAGGAGATCATGGAGTCCCAGGA
GGCGGGCATCGAGGTGCGTCGCACCTACAAAGTGGTCAACGTCTACACCG
ACTTCCCCGAGTTCTCCCGTAACCAGATCAAGGACTACCAGAAGACCTTC
AATACATACGATACGGCTCGTGATGGCTTCTTGGACCTGCAGGAGCTGAA
GTTCATGATGGAGAAGCTGGGCGCTCCGCAAACCCATCTGGGACTCAAGC
AGATGATTGCCGAGGTGGACGAGGATAACGATGGCAAGATTTCATTCCGA
GAGTTCTTGCTGATCTTCAGGAAGGCCCAGGCCGGGGAACTGGACTCCGA
TTCTGGGCTGAATCAGCTGGCCCGCCTCACGGAGGTCGATGTGGAGCAGG
TGGGAGTGAGCGGAGCCAAGAACTTCTTCGAGGCGAAAATTGAGCAACAG
CTGCGGACGAACAAGTTCCACGACGAGATTCGGGCGGAGCAGGAGGAGCG
CCGGCGAGAGGAGGAGGAGCGGGCCCAGCGGCGTCAGCAGTTCCAGCAGC
GGGCAGCGATCTTCCAGGCAAGCTTTCTAGACC

BO10477.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10641-PA 654 CG10641-RA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-RB 1860 CG10641-RB 371..1021 17..667 3255 100 Plus
Swip-1-RA 1628 CG10641-RA 371..1021 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18978358..18978769 667..256 2060 100 Minus
2L 23513712 2L 18986672..18986910 255..17 1195 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:00:43 has no hits.

BO10477.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:14 Download gff for BO10477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10641-PA 1..654 17..668 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:37 Download gff for BO10477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10641-PA 1..654 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:10 Download gff for BO10477.5prime
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1021 17..667 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:49:54 Download gff for BO10477.5prime
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1021 17..667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:49:54 Download gff for BO10477.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18978358..18978769 256..667 100 <- Minus
2L 18986672..18986910 17..255 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:10 Download gff for BO10477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18978358..18978769 256..667 100 <- Minus
arm_2L 18986672..18986910 17..255 100   Minus

BO10477.complete Sequence

685 bp (685 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631783

> BO10477.complete
GAAGTTATCAGTCGACATGTCCGTTTCCTCGAACGCCTCATCCGCCTCCA
ACAAGGACAGCGTGGACAGCCCCAGCAGCACCACCAACACGGACAGCTCC
GAGCTGACGCACATCCTCAATCGGCGCCAGGAGATCATGGAGTCCCAGGA
GGCGGGCATCGAGGTGCGTCGCACCTACAAAGTGGTCAACGTCTACACCG
ACTTCCCCGAGTTCTCCCGTAACCAGATCAAGGACTACCAGAAGACCTTC
AATACATACGATACGGCTCGTGATGGCTTCTTGGACCTGCAGGAGCTGAA
GTTCATGATGGAGAAGCTGGGCGCTCCGCAAACCCATCTGGGACTCAAGC
AGATGATTGCCGAGGTGGACGAGGATAACGATGGCAAGATTTCATTCCGA
GAGTTCTTGCTGATCTTCAGGAAGGCCCAGGCCGGGGAACTGGACTCCGA
TTCTGGGCTGAATCAGCTGGCCCGCCTCACGGAGGTCGATGTGGAGCAGG
TGGGAGTGAGCGGAGCCAAGAACTTCTTCGAGGCGAAAATTGAGCAACAG
CTGCGGACGAACAAGTTCCACGACGAGATTCGGGCGGAGCAGGAGGAGCG
CCGGCGAGAGGAGGAGGAGCGGGCCCAGCGGCGTCAGCAGTTCCAGCAGC
GGGCAGCGATCTTCCAGGCAAGCTTTCTAGACCAT

BO10477.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-RB 654 CG10641-PB 1..651 17..667 3255 100 Plus
Swip-1-RA 654 CG10641-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-RB 1860 CG10641-RB 371..1021 17..667 3255 100 Plus
Swip-1-RA 1628 CG10641-RA 371..1021 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18978358..18978769 667..256 2060 100 Minus
2L 23513712 2L 18986672..18986910 255..17 1195 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:24:03 has no hits.

BO10477.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:04 Download gff for BO10477.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 1..654 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:06 Download gff for BO10477.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 367..1017 17..667 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:27 Download gff for BO10477.complete
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1021 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:04 Download gff for BO10477.complete
Subject Subject Range Query Range Percent Splice Strand
CG10641-RA 367..1017 17..667 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:49 Download gff for BO10477.complete
Subject Subject Range Query Range Percent Splice Strand
Swip-1-RA 371..1021 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:49 Download gff for BO10477.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18978356..18978769 256..669 99 <- Minus
2L 18986672..18986910 17..255 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:27 Download gff for BO10477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18978356..18978769 256..669 99 <- Minus
arm_2L 18986672..18986910 17..255 100   Minus

BO10477.pep Sequence

Translation from 16 to 685

> BO10477.pep
MSVSSNASSASNKDSVDSPSSTTNTDSSELTHILNRRQEIMESQEAGIEV
RRTYKVVNVYTDFPEFSRNQIKDYQKTFNTYDTARDGFLDLQELKFMMEK
LGAPQTHLGLKQMIAEVDEDNDGKISFREFLLIFRKAQAGELDSDSGLNQ
LARLTEVDVEQVGVSGAKNFFEAKIEQQLRTNKFHDEIRAEQEERRREEE
ERAQRRQQFQQRAAIFQASFLDH

BO10477.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Swip-1-PB 217 CG10641-PB 1..217 1..217 1087 100 Plus
Swip-1-PA 217 CG10641-PA 1..217 1..217 1087 100 Plus
CG14861-PA 364 CG14861-PA 201..358 66..217 177 35.2 Plus