Clone Sequence Records
BO10477.3prime Sequence
683 bp (682 high quality bases) assembled on 2006-04-19
> BO10477.3prime
ATGGTCTAGAAAGCTTGCCTGGAAGATCGCTGCCCGCTGCTGGAACTGCT
GACGCCGCTGGGCCCGCTCCTCCTCCTCTCGCCGGCGCTCCTCCTGCTCC
GCCCGAATCTCGTCGTGGAACTTGTTCGTCCGCAGCTGTTGCTCAATTTT
CGCCTCGAAGAAGTTCTTGGCTCCGCTCACTCCCACCTGCTCCACATCGA
CCTCCGTGAGGCGGGCCAGCTGATTCAGCCCAGAATCGGAGTCCAGTTCC
CCGGCCTGGGCCTTCCTGAAGATCAGCAAGAACTCTCGGAATGAAATCTT
GCCATCGTTATCCTCGTCCACCTCGGCAATCATCTGCTTGAGTCCCAGAT
GGGTTTGCGGAGCGCCCAGCTTCTCCATCATGAACTTCAGCTCCTGCAGG
TCCAAGAAGCCATCACGAGCCGTATCGTATGTATTGAAGGTCTTCTGGTA
GTCCTTGATCTGGTTACGGGAGAACTCGGGGAAGTCGGTGTAGACGTTGA
CCACTTTGTAGGTGCGACGCACCTCGATGCCCGCCTCCTGGGACTCCATG
ATCTCCTGGCGCCGATTGAGGATGTGCGTCAGCTCGGAGCTGTCCGTGTT
GGTGGTGCTGCTGGGGCTGTCCACGCTGTCCTTGTTGGAGGCGGATGAGG
CGTTCGAGGAAACGGACATGTCGACTGATAACT
BO10477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10641-PA | 654 | CG10641-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-RB | 1860 | CG10641-RB | 371..1021 | 669..19 | 3255 | 100 | Minus |
Swip-1-RA | 1628 | CG10641-RA | 371..1021 | 669..19 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18978358..18978769 | 19..430 | 2060 | 100 | Plus |
2L | 23513712 | 2L | 18986672..18986910 | 431..669 | 1195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:02:03 has no hits.
BO10477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:13 Download gff for
BO10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-PA | 1..654 | 18..669 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:36 Download gff for
BO10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-PA | 1..654 | 18..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:51:45 Download gff for
BO10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1021 | 19..669 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:29 Download gff for
BO10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1021 | 19..669 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:29 Download gff for
BO10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18978358..18978769 | 19..430 | 100 | <- | Plus |
2L | 18986672..18986910 | 431..669 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:51:45 Download gff for
BO10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18978358..18978769 | 19..430 | 100 | <- | Plus |
arm_2L | 18986672..18986910 | 431..669 | 100 | | Plus |
BO10477.5prime Sequence
683 bp (682 high quality bases) assembled on 2006-04-19
> BO10477.5prime
GAAGTTATCAGTCGACATGTCCGTTTCCTCGAACGCCTCATCCGCCTCCA
ACAAGGACAGCGTGGACAGCCCCAGCAGCACCACCAACACGGACAGCTCC
GAGCTGACGCACATCCTCAATCGGCGCCAGGAGATCATGGAGTCCCAGGA
GGCGGGCATCGAGGTGCGTCGCACCTACAAAGTGGTCAACGTCTACACCG
ACTTCCCCGAGTTCTCCCGTAACCAGATCAAGGACTACCAGAAGACCTTC
AATACATACGATACGGCTCGTGATGGCTTCTTGGACCTGCAGGAGCTGAA
GTTCATGATGGAGAAGCTGGGCGCTCCGCAAACCCATCTGGGACTCAAGC
AGATGATTGCCGAGGTGGACGAGGATAACGATGGCAAGATTTCATTCCGA
GAGTTCTTGCTGATCTTCAGGAAGGCCCAGGCCGGGGAACTGGACTCCGA
TTCTGGGCTGAATCAGCTGGCCCGCCTCACGGAGGTCGATGTGGAGCAGG
TGGGAGTGAGCGGAGCCAAGAACTTCTTCGAGGCGAAAATTGAGCAACAG
CTGCGGACGAACAAGTTCCACGACGAGATTCGGGCGGAGCAGGAGGAGCG
CCGGCGAGAGGAGGAGGAGCGGGCCCAGCGGCGTCAGCAGTTCCAGCAGC
GGGCAGCGATCTTCCAGGCAAGCTTTCTAGACC
BO10477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10641-PA | 654 | CG10641-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-RB | 1860 | CG10641-RB | 371..1021 | 17..667 | 3255 | 100 | Plus |
Swip-1-RA | 1628 | CG10641-RA | 371..1021 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18978358..18978769 | 667..256 | 2060 | 100 | Minus |
2L | 23513712 | 2L | 18986672..18986910 | 255..17 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:00:43 has no hits.
BO10477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:14 Download gff for
BO10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-PA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:37 Download gff for
BO10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-PA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:10 Download gff for
BO10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1021 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:49:54 Download gff for
BO10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1021 | 17..667 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:49:54 Download gff for
BO10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18978358..18978769 | 256..667 | 100 | <- | Minus |
2L | 18986672..18986910 | 17..255 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:10 Download gff for
BO10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18978358..18978769 | 256..667 | 100 | <- | Minus |
arm_2L | 18986672..18986910 | 17..255 | 100 | | Minus |
BO10477.complete Sequence
685 bp (685 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631783
> BO10477.complete
GAAGTTATCAGTCGACATGTCCGTTTCCTCGAACGCCTCATCCGCCTCCA
ACAAGGACAGCGTGGACAGCCCCAGCAGCACCACCAACACGGACAGCTCC
GAGCTGACGCACATCCTCAATCGGCGCCAGGAGATCATGGAGTCCCAGGA
GGCGGGCATCGAGGTGCGTCGCACCTACAAAGTGGTCAACGTCTACACCG
ACTTCCCCGAGTTCTCCCGTAACCAGATCAAGGACTACCAGAAGACCTTC
AATACATACGATACGGCTCGTGATGGCTTCTTGGACCTGCAGGAGCTGAA
GTTCATGATGGAGAAGCTGGGCGCTCCGCAAACCCATCTGGGACTCAAGC
AGATGATTGCCGAGGTGGACGAGGATAACGATGGCAAGATTTCATTCCGA
GAGTTCTTGCTGATCTTCAGGAAGGCCCAGGCCGGGGAACTGGACTCCGA
TTCTGGGCTGAATCAGCTGGCCCGCCTCACGGAGGTCGATGTGGAGCAGG
TGGGAGTGAGCGGAGCCAAGAACTTCTTCGAGGCGAAAATTGAGCAACAG
CTGCGGACGAACAAGTTCCACGACGAGATTCGGGCGGAGCAGGAGGAGCG
CCGGCGAGAGGAGGAGGAGCGGGCCCAGCGGCGTCAGCAGTTCCAGCAGC
GGGCAGCGATCTTCCAGGCAAGCTTTCTAGACCAT
BO10477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-RB | 654 | CG10641-PB | 1..651 | 17..667 | 3255 | 100 | Plus |
Swip-1-RA | 654 | CG10641-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-RB | 1860 | CG10641-RB | 371..1021 | 17..667 | 3255 | 100 | Plus |
Swip-1-RA | 1628 | CG10641-RA | 371..1021 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18978358..18978769 | 667..256 | 2060 | 100 | Minus |
2L | 23513712 | 2L | 18986672..18986910 | 255..17 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:24:03 has no hits.
BO10477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:04 Download gff for
BO10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-RA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:06 Download gff for
BO10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-RA | 367..1017 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:27 Download gff for
BO10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1021 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:04 Download gff for
BO10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10641-RA | 367..1017 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:49 Download gff for
BO10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swip-1-RA | 371..1021 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:49 Download gff for
BO10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18978356..18978769 | 256..669 | 99 | <- | Minus |
2L | 18986672..18986910 | 17..255 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:27 Download gff for
BO10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18978356..18978769 | 256..669 | 99 | <- | Minus |
arm_2L | 18986672..18986910 | 17..255 | 100 | | Minus |
BO10477.pep Sequence
Translation from 16 to 685
> BO10477.pep
MSVSSNASSASNKDSVDSPSSTTNTDSSELTHILNRRQEIMESQEAGIEV
RRTYKVVNVYTDFPEFSRNQIKDYQKTFNTYDTARDGFLDLQELKFMMEK
LGAPQTHLGLKQMIAEVDEDNDGKISFREFLLIFRKAQAGELDSDSGLNQ
LARLTEVDVEQVGVSGAKNFFEAKIEQQLRTNKFHDEIRAEQEERRREEE
ERAQRRQQFQQRAAIFQASFLDH
BO10477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swip-1-PB | 217 | CG10641-PB | 1..217 | 1..217 | 1087 | 100 | Plus |
Swip-1-PA | 217 | CG10641-PA | 1..217 | 1..217 | 1087 | 100 | Plus |
CG14861-PA | 364 | CG14861-PA | 201..358 | 66..217 | 177 | 35.2 | Plus |