Clone Sequence Records
BO10478.3prime Sequence
871 bp (858 high quality bases) assembled on 2006-04-19
> BO10478.3prime
ATGGTCTAGAAAGCTTGCGACCTTAAGACGTTTCAAGAATAAAGATTGTG
ATTGCAACTCTAGCTCCGTCAGTTTGCGTACAGTTGGCACCAGCTGCTCG
ACGTGGTCTTCGTAGCCGCTGCCAGTTCTTAAATTCTTTTGACCGTACAC
GACCTTGCCGTCGAAGTCATTAACTGGCACATCCATGGTCTTGTCCACCT
GCTGGATGGTGATGTTCAAGTGGTCCTCAACTTCGGCCAGTAGGTTTGGT
TCGTTGTACCAGATGCAGCATCCTCGGACTTCGGTTAAGTTTGTGTTGTT
GCAGCTACGGCCGCGCGACTTGCACCACTCGCCGTGGTACCAAACCTTCT
CCGGCACTGTTGCCACCAAACTAATGGCCAACCCCATGCGTTCCGCCCTG
CCCACACGTCCGATGCGATGAACGTAATTGGTCTTGTCATCGGGCAGCGT
CACATTTATCATAAACGGCAGCCCCGTAATGTCTAGACCACGAGCCGCCA
CGTCCGTGCAAATCAGAAACTTGACTTGTTGCCGCTTAAACATTTCCAGG
TTTTCTTTACGCTCCTGCGGCTTTCGGTCACCATGAAGGCAGACGCACGA
GTAATGTTTTCCGCCTCGCTGGCGGAGAAATCTTTCTAAGTTATCACAGT
CTTGCTTGGTGCGGCAGAAGATAATGGCTCGGTCCATATTGTGTTTATCT
ATAGCGTGCACACAGTATTCGCCCTTGAGCAGCTTGACTGCCTGCGACAA
CGTCTCCTTCGAATGATTGCCTGGATGAACGTTGTCACGGTCGTGGACGC
CGTCGGTGCCAATGGGTTGGCGCAGCGACTGCCAGGTGGTGTCCATCTGC
GGGTCGACTAGACAGACGACG
BO10478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9054-PA | 2184 | Ddx1-RA | 1329..2181 | 871..19 | 4265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-RA | 2470 | CG9054-RA | 1443..2295 | 871..19 | 4265 | 100 | Minus |
| CG11523-RA | 874 | CG11523-RA | 838..874 | 19..55 | 185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22265400..22265842 | 461..19 | 2215 | 100 | Minus |
| 3L | 28110227 | 3L | 22264918..22265327 | 871..462 | 2050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:52:40 has no hits.
BO10478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:15 Download gff for
BO10478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-PA | 1329..2184 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:40 Download gff for
BO10478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9054-PA | 1329..2184 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:27:57 Download gff for
BO10478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 1443..2298 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:21:57 Download gff for
BO10478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 1443..2298 | 15..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:21:57 Download gff for
BO10478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22264918..22265327 | 462..871 | 100 | -> | Minus |
| 3L | 22265400..22265845 | 15..461 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:27:57 Download gff for
BO10478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22258018..22258427 | 462..871 | 100 | -> | Minus |
| arm_3L | 22258500..22258945 | 15..461 | 99 | | Minus |
BO10478.5prime Sequence
989 bp (788 high quality bases) assembled on 2006-04-19
> BO10478.5prime
GAAGTTATCAGTCGACATGACTGCATTCGAAGAGTTTGGCGTGCTTCCGG
AGCTGGGAATGGCCACAGACGAATTGGACTGGACCCTGCCCACCGATGTC
CAGGCTGAGGCCATTCCTCTGATCCTGGGTGGCGGCGATGTGCTGATGGC
CGCCGAAACTGGTTCCGGAAAAACGGGTGCCTTCTGCCTCCCCATTCTGC
AAATCGTGTGGGAGACCTTGCGTGATCTGGAGGAGGGGAAGGCTGGCAAG
GGCGGTGCAATTGGAGGAGCTGTGACTCCGTGGACCATGTCCTTCTTCGA
CCGAGGAAACGCGCTTGCCGTCACTCCTGATGGTCTGCGTTGCCAGTCGC
GGGAGTTCAAGGAGTGGCACGGGTGTCGGGCCACCACTGGCGTTCGCGGA
AAGGGCAAGTTCTACTTTGAGGCCACGGTAACGGACGAGGGACTGTGTCG
TGTGGGCTGGTCTACACAGCAGGCAAACCTCGATTTGGGCACCTGTCGCA
TGGGCTTTGGATTCGGCGGCACCGGCAAGAAGTCCAACAACCGCCAGTTT
GATGACTACGGTGAGGCATTCGGCAAGGCAGATGTCATCGGCTGCCTGCT
CGATTTGAAAAACCAGGAAGTGAGCTTCACCAAGAATGGCCAGAACCTGG
GCGTAGCCTTCCGCCTGCCGGACAACCTTGCCAAGGAGACCTTTTACCCG
GCGGTGGTGCTGAAGAACGCCGAAATGCAGTTTAACTTTGGAAAGACTGA
CTTCAAGTATGCCCCGGGTAACGGGTTCGTTGGCGCTTGCCAGGCTGGAC
CCGAGCATAGCAAGGCCAATCCGATAACCGGTCCCGCAGCTGGAGCACCG
TNCGCCAAACCCGCGCCTAACGCCCCTCAGGCCATTATCATGGAGCCCAG
CAGAGAATGGCCGAGCAAACCTACAACCAGATCGAGAAGTTAAATACCCC
CTGACCAACCCAGAAGTTCGCTCCCTGCTGCTAATCCGG
BO10478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9054-PA | 2184 | Ddx1-RA | 1..892 | 17..908 | 4391 | 99.6 | Plus |
| CG9054-PA | 2184 | Ddx1-RA | 893..926 | 908..941 | 170 | 100 | Plus |
| CG9054-PA | 2184 | Ddx1-RA | 926..968 | 940..982 | 140 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-RA | 2470 | CG9054-RA | 115..1086 | 17..986 | 4709 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22263658..22264561 | 85..986 | 4319 | 99 | Plus |
| 3L | 28110227 | 3L | 22263547..22263604 | 27..84 | 275 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:55:37 has no hits.
BO10478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:16 Download gff for
BO10478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-PA | 1..974 | 17..989 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:41 Download gff for
BO10478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9054-PA | 1..974 | 17..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:04:31 Download gff for
BO10478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 108..1088 | 8..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:44:45 Download gff for
BO10478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 108..1088 | 8..989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:44:45 Download gff for
BO10478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22263553..22263604 | 33..84 | 100 | -> | Plus |
| 3L | 22263658..22264563 | 85..989 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:04:31 Download gff for
BO10478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22256653..22256704 | 33..84 | 100 | -> | Plus |
| arm_3L | 22256758..22257663 | 85..989 | 98 | | Plus |
BO10478.complete Sequence
2215 bp (2215 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631784
> BO10478.complete
GAAGTTATCAGTCGACATGACTGCATTCGAAGAGTTTGGCGTGCTTCCGG
AGCTGGGAATGGCCACAGACGAATTGGACTGGACCCTGCCCACCGATGTC
CAGGCTGAGGCCATTCCTCTGATCCTGGGTGGCGGCGATGTGCTGATGGC
CGCCGAAACTGGTTCCGGAAAAACGGGTGCCTTCTGCCTCCCCATTCTGC
AAATCGTGTGGGAGACCTTGCGTGATCTGGAGGAGGGGAAGGCTGGCAAG
GGCGGTGCAATTGGAGGAGCTGTGACTCCGTGGACCATGTCCTTCTTCGA
CCGAGGAAACGCGCTTGCCGTCACTCCTGATGGTCTGCGTTGCCAGTCGC
GGGAGTTCAAGGAGTGGCACGGGTGTCGGGCCACCACTGGCGTTCGCGGA
AAGGGCAAGTTCTACTTTGAGGCCACGGTAACGGACGAGGGACTGTGTCG
TGTGGGCTGGTCTACACAGCAGGCAAACCTCGATTTGGGCACCTGTCGCA
TGGGCTTTGGATTCGGCGGCACCGGCAAGAAGTCCAACAACCGCCAGTTT
GATGACTACGGTGAGGCATTCGGCAAGGCAGATGTCATCGGCTGCCTGCT
CGATTTGAAAAACCAGGAAGTGAGCTTCACCAAGAATGGCCAGAACCTGG
GCGTAGCCTTCCGCCTGCCGGACAACCTTGCCAAGGAGACCTTTTACCCG
GCGGTGGTGCTGAAGAACGCCGAAATGCAGTTTAACTTTGGAAAGACTGA
CTTCAAGTATGCCCCGGGTAACGGGTTCGTTGGCGCTTGCCAGGCTGGAC
CCGAGCATAGCAAGGCCAATCCGATAACCGGTCCCGCAGCTGGAGCACCG
TCCGCCAAACCGGCGCCTAACGCCCCTCAGGCCATTATCATGGAGCCCAG
CAGAGAATTGGCCGAGCAAACCTACAACCAGATCGAGAAGTTTAAATACC
ACCTGAGCAACCCAGAGGTTCGCTCCCTGCTGCTTATCGGTGGAGTGAGG
TTGGAAGAGCAAAAGGCGCAGCTGATGCAGGGCACTCACATAGTGGTGGG
CACGCCCGGGCGGCTGGAGGAGATGATCAACAGTGGACTGGTCCTGCTCA
CCCATTGCCGCTTTTTTGTTCTGGATGAGGCTGACGCACTTCTGAAGCAG
GGTTACACCGAGCTGATTGACCGTCTACACAAACAAATTCCCAAGATCAC
ATCGGATGGTCGCCGTCTGCAGATGGTCGTCTGCTCGGCCACGTTGCATG
CATTTGAGGTGAAGAAAATGGCTGAGCGCCTGATGCACTTCCCCACCTGG
GTGGATCTGAAGGGGGAGGATGCTGTCCCTGAGACGGTTCACCACGTCGT
CTGTCTAGTCGACCCGCAGATGGACACCACCTGGCAGTCGCTGCGCCAAC
CCATTGGCACCGACGGCGTCCACGACCGTGACAACGTTCATCCAGGCAAT
CATTCGAAGGAGACGTTGTCGCAGGCAGTCAAGCTGCTCAAGGGCGAATA
CTGTGTGCACGCTATAGATAAACACAATATGGACCGAGCCATTATCTTCT
GCCGCACCAAGCAAGACTGTGATAACTTAGAAAGATTTCTCCGCCAGCGA
GGCGGAAAACATTACTCGTGCGTCTGCCTTCATGGTGACCGAAAGCCGCA
GGAGCGTAAAGAAAACCTGGAAATGTTTAAGCGGCAACAAGTCAAGTTTC
TGATTTGCACGGACGTGGCGGCTCGTGGTCTAGACATTACGGGGCTGCCG
TTTATGATAAATGTGACGCTGCCCGATGACAAGACCAATTACGTTCATCG
CATCGGACGTGTGGGCAGGGCGGAACGCATGGGGTTGGCCATTAGTTTGG
TGGCAACAGTGCCGGAGAAGGTTTGGTACCACGGCGAGTGGTGCAAGTCG
CGCGGCCGTAGCTGCAACAACACAAACTTAACCGAAGTCCGAGGATGCTG
CATCTGGTACAACGAACCAAACCTACTGGCCGAAGTTGAGGACCACTTGA
ACATCACCATCCAGCAGGTGGACAAGACCATGGATGTGCCAGTTAATGAC
TTCGACGGCAAGGTCGTGTACGGTCAAAAGAATTTAAGAACTGGCAGCGG
CTACGAAGACCACGTCGAGCAGCTGGTGCCAACTGTACGCAAACTGACGG
AGCTAGAGTTGCAATCACAATCTTTATTCTTGAAACGTCTTAAGGTCGCA
AGCTTTCTAGACCAT
BO10478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-RA | 2184 | CG9054-PA | 1..2181 | 17..2197 | 10875 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-RA | 2470 | CG9054-RA | 115..2295 | 17..2197 | 10875 | 99.9 | Plus |
| CG11523-RA | 874 | CG11523-RA | 838..874 | 2197..2161 | 185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22263658..22265327 | 85..1754 | 8320 | 99.9 | Plus |
| 3L | 28110227 | 3L | 22265400..22265842 | 1755..2197 | 2215 | 100 | Plus |
| 3L | 28110227 | 3L | 22263547..22263604 | 27..84 | 275 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:46:02 has no hits.
BO10478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:30 Download gff for
BO10478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 1..2184 | 17..2201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:54 Download gff for
BO10478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 108..2298 | 8..2201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:12 Download gff for
BO10478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 115..2295 | 17..2199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:31 Download gff for
BO10478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 108..2298 | 8..2201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:03 Download gff for
BO10478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddx1-RA | 115..2295 | 17..2199 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:03 Download gff for
BO10478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22263483..22263498 | 17..32 | 100 | -> | Plus |
| 3L | 22263553..22263604 | 33..84 | 100 | -> | Plus |
| 3L | 22263658..22265327 | 85..1754 | 99 | -> | Plus |
| 3L | 22265400..22265842 | 1755..2199 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:12 Download gff for
BO10478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22256583..22256598 | 17..32 | 100 | -> | Plus |
| arm_3L | 22256653..22256704 | 33..84 | 100 | -> | Plus |
| arm_3L | 22256758..22258427 | 85..1754 | 99 | -> | Plus |
| arm_3L | 22258500..22258942 | 1755..2199 | 99 | | Plus |
BO10478.pep Sequence
Translation from 16 to 2215
> BO10478.pep
MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGS
GKTGAFCLPILQIVWETLRDLEEGKAGKGGAIGGAVTPWTMSFFDRGNAL
AVTPDGLRCQSREFKEWHGCRATTGVRGKGKFYFEATVTDEGLCRVGWST
QQANLDLGTCRMGFGFGGTGKKSNNRQFDDYGEAFGKADVIGCLLDLKNQ
EVSFTKNGQNLGVAFRLPDNLAKETFYPAVVLKNAEMQFNFGKTDFKYAP
GNGFVGACQAGPEHSKANPITGPAAGAPSAKPAPNAPQAIIMEPSRELAE
QTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRL
EEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRR
LQMVVCSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDP
QMDTTWQSLRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAI
DKHNMDRAIIFCRTKQDCDNLERFLRQRGGKHYSCVCLHGDRKPQERKEN
LEMFKRQQVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVG
RAERMGLAISLVATVPEKVWYHGEWCKSRGRSCNNTNLTEVRGCCIWYNE
PNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVYGQKNLRTGSGYEDHV
EQLVPTVRKLTELELQSQSLFLKRLKVASFLDH
BO10478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddx1-PA | 727 | CG9054-PA | 1..727 | 1..727 | 3876 | 100 | Plus |
| Rm62-PH | 575 | CG10279-PH | 209..488 | 285..610 | 332 | 29.4 | Plus |
| Rm62-PD | 575 | CG10279-PD | 209..488 | 285..610 | 332 | 29.4 | Plus |
| Rm62-PI | 578 | CG10279-PI | 212..491 | 285..610 | 332 | 29.4 | Plus |
| Rm62-PF | 578 | CG10279-PF | 212..491 | 285..610 | 332 | 29.4 | Plus |
