Clone BO10479 Report

Search the DGRC for BO10479

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG14642-RA
Protein status:BO10479.pep: validated full length
Sequenced Size:634

Clone Sequence Records

BO10479.3prime Sequence

632 bp (631 high quality bases) assembled on 2006-04-19

> BO10479.3prime
ATGGTCTAGAAAGCTTGCAGGTCCCCGATGCGAACCCACTTGGGGGGCGC
CTCGTATATGGATGTACAGTGGGCTGCGGTAAGCACGAATCTCTCGCTTA
TCAAGCTGCCGCCACATTTGTAGTCCACTTGCCCTCTGTCCGACTCGAAG
CCCACGGCAGCCGGGCCGGGCCAGGACCCGACCATCGAAGTCTGCGTCGT
TGGCATCGGCAGCCACTGCGGTATCATTGGGAAAGATGCGCTCCACATAT
TCGGAATATTTTTGCTCGCAGAGGCGGCGTTGCTTGTTTTCCTTCTTTTT
AAAGCCCCCGGGGGGCGGCGGAAAGGGCTGGCCGGGCATCGGCGGCGGGG
GGTATTGTCTGGGCTTGGGCTTGGGCTGGGTCGGGCCCTCCACCCGATCA
AATTGAAAGTCTGTTATGTGAAACCACATCTTCTCCTCGGGCTTGCCTGG
TCCCGCGTCTAACTCCGGAAAGACTATGTCGCGGTCCACGGGAGAGCGGA
TCGAGTCGTCTTGCAAGGGGCGCATTCGCCCTTCTGGGGGCAGGCGCTGG
GTGTGAGTATTGCTCAGGCACCAGAGCCCGATAAATGATATCAGACACAC
GGACAGATTGCGAAGCATGTCGACTGATAACT

BO10479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-PA 603 CG14642-RA 1..600 618..19 3000 100 Minus
CG14642-PB 1179 CG14642-RB 1..458 618..161 2290 100 Minus
CG14642-PB 1179 CG14642-RB 474..617 162..19 720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-RA 1344 CG14642-RA 23..622 618..19 3000 100 Minus
CG14642-RC 1305 CG14642-RC 23..639 618..19 2820 97.2 Minus
CG14642-RB 1270 CG14642-RB 23..639 618..19 2820 97.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4242338..4242695 261..618 1790 100 Plus
3R 32079331 3R 4241977..4242088 51..162 560 100 Plus
3R 32079331 3R 4242174..4242277 161..264 505 99 Plus
Blast to na_te.dros performed on 2015-02-12 04:19:01 has no hits.

BO10479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:17 Download gff for BO10479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-PA 1..603 16..618 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:42 Download gff for BO10479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-PA 1..603 16..618 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:46 Download gff for BO10479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..628 12..618 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:32 Download gff for BO10479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..628 12..618 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:32 Download gff for BO10479.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4241978..4242087 52..161 100 <- Plus
3R 4242175..4242273 162..260 100 <- Plus
3R 4242338..4242695 261..618 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:46 Download gff for BO10479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 67700..67809 52..161 100 <- Plus
arm_3R 67897..67995 162..260 100 <- Plus
arm_3R 68060..68417 261..618 100   Plus

BO10479.5prime Sequence

632 bp (631 high quality bases) assembled on 2006-04-19

> BO10479.5prime
GAAGTTATCAGTCGACATGCTTCGCAATCTGTCCGTGTGTCTGATATCAT
TTATCGGGCTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTGCCCCCA
GAAGGGCGAATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCCCGTGGA
CCGCGACATAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGCCCGAGG
AGAAGATGTGGTTTCACATAACAGACTTTCAATTTGATCGGGTGGAGGGC
CCGACCCAGCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCCGATGCC
CGGCCAGCCCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGGAAAACA
AGCAACGCCGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAGCGCATC
TTTCCCAATGATACCGCAGTGGCTGCCGATGCCAACGACGCAGACTTCGA
TGGTCGGGTCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCGGACAGA
GGGCAAGTGGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAGATTCGT
GCTTACCGCAGCCCACTGTACATCCATATACGAGGCGCCCCCCAAGTGGG
TTCGCATCGGGGACCTGCAAGCTTTCTAGACC

BO10479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-PA 603 CG14642-RA 1..600 17..616 3000 100 Plus
CG14642-PB 1179 CG14642-RB 1..458 17..474 2290 100 Plus
CG14642-PB 1179 CG14642-RB 474..617 473..616 720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-RA 1344 CG14642-RA 23..622 17..616 3000 100 Plus
CG14642-RC 1305 CG14642-RC 23..639 17..616 2820 97.2 Plus
CG14642-RB 1270 CG14642-RB 23..639 17..616 2820 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4242338..4242695 374..17 1790 100 Minus
3R 32079331 3R 4241977..4242088 584..473 560 100 Minus
3R 32079331 3R 4242174..4242277 474..371 505 99 Minus
Blast to na_te.dros performed on 2015-02-10 03:44:09 has no hits.

BO10479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:18 Download gff for BO10479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-PA 1..603 17..619 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:44 Download gff for BO10479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-PA 1..603 17..619 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:07 Download gff for BO10479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..628 17..623 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:05 Download gff for BO10479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..628 17..623 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:05 Download gff for BO10479.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4241978..4242087 474..583 100 <- Minus
3R 4242175..4242273 375..473 100 <- Minus
3R 4242338..4242695 17..374 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:07 Download gff for BO10479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 67700..67809 474..583 100 <- Minus
arm_3R 67897..67995 375..473 100 <- Minus
arm_3R 68060..68417 17..374 100   Minus

BO10479.complete Sequence

634 bp (634 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631785

> BO10479.complete
GAAGTTATCAGTCGACATGCTTCGCAATCTGTCCGTGTGTCTGATATCAT
TTATCGGGCTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTGCCCCCA
GAAGGGCGAATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCCCGTGGA
CCGCGACATAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGCCCGAGG
AGAAGATGTGGTTTCACATAACAGACTTTCAATTTGATCGGGTGGAGGGC
CCGACCCAGCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCCGATGCC
CGGCCAGCCCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGGAAAACA
AGCAACGCCGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAGCGCATC
TTTCCCAATGATACCGCAGTGGCTGCCGATGCCAACGACGCAGACTTCGA
TGGTCGGGTCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCGGACAGA
GGGCAAGTGGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAGATTCGT
GCTTACCGCAGCCCACTGTACATCCATATACGAGGCGCCCCCCAAGTGGG
TTCGCATCGGGGACCTGCAAGCTTTCTAGACCAT

BO10479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-RA 603 CG14642-PA 1..600 17..616 3000 100 Plus
CG14642-RC 1179 CG14642-PC 1..617 17..616 2795 97.2 Plus
CG14642-RB 1179 CG14642-PB 1..617 17..616 2795 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-RA 1344 CG14642-RA 23..622 17..616 3000 100 Plus
CG14642-RC 1305 CG14642-RC 23..639 17..616 2795 97.2 Plus
CG14642-RB 1270 CG14642-RB 23..639 17..616 2795 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4242338..4242695 374..17 1790 100 Minus
3R 32079331 3R 4241977..4242088 584..473 560 100 Minus
3R 32079331 3R 4242174..4242277 474..371 505 99 Minus
Blast to na_te.dros performed on 2014-11-26 14:54:29 has no hits.

BO10479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:29 Download gff for BO10479.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 1..603 17..619 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:59 Download gff for BO10479.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 92..697 17..623 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:16 Download gff for BO10479.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..622 17..618 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:29 Download gff for BO10479.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 92..697 17..623 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:32 Download gff for BO10479.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..622 17..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:32 Download gff for BO10479.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4241883..4241919 584..618 94 <- Minus
3R 4241978..4242087 474..583 100 <- Minus
3R 4242175..4242273 375..473 100 <- Minus
3R 4242338..4242695 17..374 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:16 Download gff for BO10479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 67605..67641 584..618 94 <- Minus
arm_3R 67700..67809 474..583 100 <- Minus
arm_3R 67897..67995 375..473 100 <- Minus
arm_3R 68060..68417 17..374 100   Minus

BO10479.pep Sequence

Translation from 16 to 634

> BO10479.pep
MLRNLSVCLISFIGLWCLSNTHTQRLPPEGRMRPLQDDSIRSPVDRDIVF
PELDAGPGKPEEKMWFHITDFQFDRVEGPTQPKPKPRQYPPPPMPGQPFP
PPPGGFKKKENKQRRLCEQKYSEYVERIFPNDTAVAADANDADFDGRVLA
RPGCRGLRVGQRASGLQMWRQLDKREIRAYRSPLYIHIRGAPQVGSHRGP
ASFLDH

BO10479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-PA 200 CG14642-PA 1..200 1..200 1100 100 Plus
CG14642-PC 392 CG14642-PC 1..153 1..153 847 100 Plus
CG14642-PB 392 CG14642-PB 1..153 1..153 847 100 Plus