Clone Sequence Records
BO10479.3prime Sequence
632 bp (631 high quality bases) assembled on 2006-04-19
> BO10479.3prime
ATGGTCTAGAAAGCTTGCAGGTCCCCGATGCGAACCCACTTGGGGGGCGC
CTCGTATATGGATGTACAGTGGGCTGCGGTAAGCACGAATCTCTCGCTTA
TCAAGCTGCCGCCACATTTGTAGTCCACTTGCCCTCTGTCCGACTCGAAG
CCCACGGCAGCCGGGCCGGGCCAGGACCCGACCATCGAAGTCTGCGTCGT
TGGCATCGGCAGCCACTGCGGTATCATTGGGAAAGATGCGCTCCACATAT
TCGGAATATTTTTGCTCGCAGAGGCGGCGTTGCTTGTTTTCCTTCTTTTT
AAAGCCCCCGGGGGGCGGCGGAAAGGGCTGGCCGGGCATCGGCGGCGGGG
GGTATTGTCTGGGCTTGGGCTTGGGCTGGGTCGGGCCCTCCACCCGATCA
AATTGAAAGTCTGTTATGTGAAACCACATCTTCTCCTCGGGCTTGCCTGG
TCCCGCGTCTAACTCCGGAAAGACTATGTCGCGGTCCACGGGAGAGCGGA
TCGAGTCGTCTTGCAAGGGGCGCATTCGCCCTTCTGGGGGCAGGCGCTGG
GTGTGAGTATTGCTCAGGCACCAGAGCCCGATAAATGATATCAGACACAC
GGACAGATTGCGAAGCATGTCGACTGATAACT
BO10479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-PA | 603 | CG14642-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
CG14642-PB | 1179 | CG14642-RB | 1..458 | 618..161 | 2290 | 100 | Minus |
CG14642-PB | 1179 | CG14642-RB | 474..617 | 162..19 | 720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-RA | 1344 | CG14642-RA | 23..622 | 618..19 | 3000 | 100 | Minus |
CG14642-RC | 1305 | CG14642-RC | 23..639 | 618..19 | 2820 | 97.2 | Minus |
CG14642-RB | 1270 | CG14642-RB | 23..639 | 618..19 | 2820 | 97.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4242338..4242695 | 261..618 | 1790 | 100 | Plus |
3R | 32079331 | 3R | 4241977..4242088 | 51..162 | 560 | 100 | Plus |
3R | 32079331 | 3R | 4242174..4242277 | 161..264 | 505 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:19:01 has no hits.
BO10479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:17 Download gff for
BO10479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-PA | 1..603 | 16..618 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:42 Download gff for
BO10479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-PA | 1..603 | 16..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:46 Download gff for
BO10479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..628 | 12..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:32 Download gff for
BO10479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..628 | 12..618 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:32 Download gff for
BO10479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4241978..4242087 | 52..161 | 100 | <- | Plus |
3R | 4242175..4242273 | 162..260 | 100 | <- | Plus |
3R | 4242338..4242695 | 261..618 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:46 Download gff for
BO10479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 67700..67809 | 52..161 | 100 | <- | Plus |
arm_3R | 67897..67995 | 162..260 | 100 | <- | Plus |
arm_3R | 68060..68417 | 261..618 | 100 | | Plus |
BO10479.5prime Sequence
632 bp (631 high quality bases) assembled on 2006-04-19
> BO10479.5prime
GAAGTTATCAGTCGACATGCTTCGCAATCTGTCCGTGTGTCTGATATCAT
TTATCGGGCTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTGCCCCCA
GAAGGGCGAATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCCCGTGGA
CCGCGACATAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGCCCGAGG
AGAAGATGTGGTTTCACATAACAGACTTTCAATTTGATCGGGTGGAGGGC
CCGACCCAGCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCCGATGCC
CGGCCAGCCCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGGAAAACA
AGCAACGCCGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAGCGCATC
TTTCCCAATGATACCGCAGTGGCTGCCGATGCCAACGACGCAGACTTCGA
TGGTCGGGTCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCGGACAGA
GGGCAAGTGGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAGATTCGT
GCTTACCGCAGCCCACTGTACATCCATATACGAGGCGCCCCCCAAGTGGG
TTCGCATCGGGGACCTGCAAGCTTTCTAGACC
BO10479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-PA | 603 | CG14642-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
CG14642-PB | 1179 | CG14642-RB | 1..458 | 17..474 | 2290 | 100 | Plus |
CG14642-PB | 1179 | CG14642-RB | 474..617 | 473..616 | 720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-RA | 1344 | CG14642-RA | 23..622 | 17..616 | 3000 | 100 | Plus |
CG14642-RC | 1305 | CG14642-RC | 23..639 | 17..616 | 2820 | 97.2 | Plus |
CG14642-RB | 1270 | CG14642-RB | 23..639 | 17..616 | 2820 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4242338..4242695 | 374..17 | 1790 | 100 | Minus |
3R | 32079331 | 3R | 4241977..4242088 | 584..473 | 560 | 100 | Minus |
3R | 32079331 | 3R | 4242174..4242277 | 474..371 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:44:09 has no hits.
BO10479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:18 Download gff for
BO10479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-PA | 1..603 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:44 Download gff for
BO10479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-PA | 1..603 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:07 Download gff for
BO10479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..628 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:05 Download gff for
BO10479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..628 | 17..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:05 Download gff for
BO10479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4241978..4242087 | 474..583 | 100 | <- | Minus |
3R | 4242175..4242273 | 375..473 | 100 | <- | Minus |
3R | 4242338..4242695 | 17..374 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:07 Download gff for
BO10479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 67700..67809 | 474..583 | 100 | <- | Minus |
arm_3R | 67897..67995 | 375..473 | 100 | <- | Minus |
arm_3R | 68060..68417 | 17..374 | 100 | | Minus |
BO10479.complete Sequence
634 bp (634 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631785
> BO10479.complete
GAAGTTATCAGTCGACATGCTTCGCAATCTGTCCGTGTGTCTGATATCAT
TTATCGGGCTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTGCCCCCA
GAAGGGCGAATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCCCGTGGA
CCGCGACATAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGCCCGAGG
AGAAGATGTGGTTTCACATAACAGACTTTCAATTTGATCGGGTGGAGGGC
CCGACCCAGCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCCGATGCC
CGGCCAGCCCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGGAAAACA
AGCAACGCCGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAGCGCATC
TTTCCCAATGATACCGCAGTGGCTGCCGATGCCAACGACGCAGACTTCGA
TGGTCGGGTCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCGGACAGA
GGGCAAGTGGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAGATTCGT
GCTTACCGCAGCCCACTGTACATCCATATACGAGGCGCCCCCCAAGTGGG
TTCGCATCGGGGACCTGCAAGCTTTCTAGACCAT
BO10479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-RA | 603 | CG14642-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
CG14642-RC | 1179 | CG14642-PC | 1..617 | 17..616 | 2795 | 97.2 | Plus |
CG14642-RB | 1179 | CG14642-PB | 1..617 | 17..616 | 2795 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-RA | 1344 | CG14642-RA | 23..622 | 17..616 | 3000 | 100 | Plus |
CG14642-RC | 1305 | CG14642-RC | 23..639 | 17..616 | 2795 | 97.2 | Plus |
CG14642-RB | 1270 | CG14642-RB | 23..639 | 17..616 | 2795 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4242338..4242695 | 374..17 | 1790 | 100 | Minus |
3R | 32079331 | 3R | 4241977..4242088 | 584..473 | 560 | 100 | Minus |
3R | 32079331 | 3R | 4242174..4242277 | 474..371 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:54:29 has no hits.
BO10479.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:29 Download gff for
BO10479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 1..603 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:59 Download gff for
BO10479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 92..697 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:16 Download gff for
BO10479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..622 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:29 Download gff for
BO10479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 92..697 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:32 Download gff for
BO10479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..622 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:32 Download gff for
BO10479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4241883..4241919 | 584..618 | 94 | <- | Minus |
3R | 4241978..4242087 | 474..583 | 100 | <- | Minus |
3R | 4242175..4242273 | 375..473 | 100 | <- | Minus |
3R | 4242338..4242695 | 17..374 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:16 Download gff for
BO10479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 67605..67641 | 584..618 | 94 | <- | Minus |
arm_3R | 67700..67809 | 474..583 | 100 | <- | Minus |
arm_3R | 67897..67995 | 375..473 | 100 | <- | Minus |
arm_3R | 68060..68417 | 17..374 | 100 | | Minus |
BO10479.pep Sequence
Translation from 16 to 634
> BO10479.pep
MLRNLSVCLISFIGLWCLSNTHTQRLPPEGRMRPLQDDSIRSPVDRDIVF
PELDAGPGKPEEKMWFHITDFQFDRVEGPTQPKPKPRQYPPPPMPGQPFP
PPPGGFKKKENKQRRLCEQKYSEYVERIFPNDTAVAADANDADFDGRVLA
RPGCRGLRVGQRASGLQMWRQLDKREIRAYRSPLYIHIRGAPQVGSHRGP
ASFLDH
BO10479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-PA | 200 | CG14642-PA | 1..200 | 1..200 | 1100 | 100 | Plus |
CG14642-PC | 392 | CG14642-PC | 1..153 | 1..153 | 847 | 100 | Plus |
CG14642-PB | 392 | CG14642-PB | 1..153 | 1..153 | 847 | 100 | Plus |