Clone Sequence Records
BO10480.3prime Sequence
871 bp (783 high quality bases) assembled on 2006-04-19
> BO10480.3prime
ATGGTCTAGAAAGCTTGCAACGATGGCTTCCGCCGAACCAAAGACTATAA
ATATGATCCAGCCAACCAAATTGATGCCAGCAGCGGCGCTGAACACCATC
GGCCAGCTTTGTGTGAGCTCCAGAATGTGTCCGGCCAAGTATACTCCGAG
AAAGCCAGGAATCGCGCCCACTGTGTTCATCAGGCCAAAGACGCTGCCCG
AATGCAGAGGTGCCAGGTCTTGGGGATTCACTGTTACCGCGTTGTTGTGG
AAGCCCGTGCCGCCAATGATAATGGTCATGCAGATGAGCGCCGTATGGAA
GTCCGAGGTGCGGCTCATCACAAACAGGGCCAGATTCTGAGCGGCAAAGC
AGCAACTTTGGATGACCTTGCGCACCGTCGTCGTGTGCCATTCGCGAGCG
AGTAATCTGGTGGTCAAGTACTTGGCGAATAGCGTGCACGGTGGCAGGGC
AAGCCACGGGATCATGTTCACTACCCAACCCTTGGCGTGTGGAAAGCCGT
CGTGGAAGTATGTAGGCAGCCAGGAGAGTAGCACGAAGAAGCAGTTCATC
TCGCAGGCGTGAGTCAGCACACAGGCCCAGAAGGACAGCCTACGAAAGTA
TCGCAACCAAGGCACGGCTGACGTCTCTGCCGGACTCTTGTTCGCGCACA
GTCGGGATGGCGTGGCAATATTAATGATTCGGTTTCGCTCGCCGGCCATT
GCATAGTAGCGCAGCACCAGCGCCCATGCGATGCCCATCAGTCCTATCAC
CCGGAATACATACGACCAGCCGAAGTAGTCCAGCAGAAAAGATCCCATAA
TCCCAGTCAGAAGAGTACCTAGAGCCGATCCCGCTGTGAGCAGCCCAAAG
AAGCTGCTTCTCTCATTGGGG
BO10480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15438-PA | 1320 | CG15438-RA | 465..1317 | 871..19 | 4265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-RA | 1846 | CG15438-RA | 673..1525 | 871..19 | 4265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4446991..4447843 | 19..871 | 4265 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:32:03 has no hits.
BO10480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:19 Download gff for
BO10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-PA | 465..1320 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:45 Download gff for
BO10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-PA | 465..1320 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:37:17 Download gff for
BO10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 673..1534 | 8..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:17 Download gff for
BO10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 673..1534 | 8..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:17 Download gff for
BO10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4446982..4447843 | 8..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:37:17 Download gff for
BO10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4446982..4447843 | 8..871 | 99 | | Plus |
BO10480.5prime Sequence
895 bp (758 high quality bases) assembled on 2006-04-19
> BO10480.5prime
GAAGTTATCAGTCGACATGGACGAGAAGCTAAAATATTCTCTGCTGCGCG
GGGAACTGGTGGACACGCAGAGCATTTGGACCAGGCATGAGAAGCGTGTC
TGGTTCATCACCCTTATTACGGGCACCTGTATGCTGTACTCCACCCGCAC
CACTATGCCACTTCTTGTGCCGGCCGTGGCATCCGCCCAAAAGTGGAGCA
AAACCGACTCGGGCACTGTGCTCAGCTCCTTCTTCTGGGGCTACACACTC
ACGCAGGTTGTGGGCGGCTACTTCAGCGACCGCTTTGGAGGCCAGCGAGT
CATTCTGTTTGCCGCAATCGGCTGGTCGCTTATCACATTCCTAATGCCCA
CTATCATCTGGACGGCGGGCTCCATCAAGAGTTACGCTATTCCCTTCATT
GTTGCCATTCGAATCCTGAACGGCGCTCTTCAGGGCGTGCACTTTCCTAG
CATGATTAGTCTAACCAGTCAGAATTTGTGCCCCAATGAGAGAAGCAGCT
TCTTTGGGCTGCTCACAGCGGGATCGGCTCTAGGTACTCTTCTGACTGGG
ATTATGGGATCTTTTCTGCTGGACTACTTCGGCTGGTCGTATGTATTCCG
GGTGATAGGACTGATGGGCATCGCATGGGCGCTGGTGCTGCGCTACTATG
CAATGGCCGGCGAGCGAAACCGAATCATTAATATTGCCACGCCATCCCGA
CTGTGCGCGAACAAGAGTCCGGCAGAGACGTCAGCCGTGCCTTGGTTGCG
ATACTTTCGTAGGCTGTCCTTCTGGGCCTGTGTGCTGACTCACGCCTGCG
AGATGAACTGCTTCTTCGTGCTACTCTCCTGGCTGCCTACATACTTCCAC
GACGGCTTTTCACACGCCAAGGGTTGGGTAGTGAACATGATCCCG
BO10480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15438-PA | 1320 | CG15438-RA | 1..879 | 17..895 | 4370 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-RA | 1846 | CG15438-RA | 208..1087 | 16..895 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4447429..4447854 | 895..470 | 2115 | 99.8 | Minus |
2L | 23513712 | 2L | 4447906..4448296 | 472..82 | 1955 | 100 | Minus |
2L | 23513712 | 2L | 4448359..4448428 | 85..16 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:51:56 has no hits.
BO10480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:20 Download gff for
BO10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:47 Download gff for
BO10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:28 Download gff for
BO10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 203..1087 | 11..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:18:19 Download gff for
BO10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 203..1087 | 11..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:18:19 Download gff for
BO10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4447429..4447851 | 473..895 | 99 | <- | Minus |
2L | 4447906..4448293 | 85..472 | 100 | <- | Minus |
2L | 4448360..4448433 | 11..84 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:28 Download gff for
BO10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4447429..4447851 | 473..895 | 99 | <- | Minus |
arm_2L | 4447906..4448293 | 85..472 | 100 | <- | Minus |
arm_2L | 4448360..4448433 | 11..84 | 97 | | Minus |
BO10480.complete Sequence
1351 bp (1351 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631786
> BO10480.complete
GAAGTTATCAGTCGACATGGACGAGAAGCTAAAATATTCTCTGCTGCGCG
GGGAACTGGTGGACACGCAGAGCATTTGGACCAGGCATGAGAAGCGTGTC
TGGTTCATCACCCTTATTACGGGCACCTGTATGCTGTACTCCACCCGCAC
CACTATGCCACTTCTTGTGCCGGCCGTGGCATCCGCCCAAAAGTGGAGCA
AAACCGACTCGGGCACTGTGCTCAGCTCCTTCTTCTGGGGCTACACACTC
ACGCAGGTTGTGGGCGGCTACTTCAGCGACCGCTTTGGAGGCCAGCGAGT
CATTCTGTTTGCCGCAATCGGCTGGTCGCTTATCACATTCCTAATGCCCA
CTATCATCTGGACGGCGGGCTCCATCAAGAGTTACGCTATTCCCTTCATT
GTTGCCATTCGAATCCTGAACGGCGCTCTTCAGGGCGTGCACTTTCCTAG
CATGATTAGTCTAACCAGTCAGAATTTGTGCCCCAATGAGAGAAGCAGCT
TCTTTGGGCTGCTCACAGCGGGATCGGCTCTAGGTACTCTTCTGACTGGG
ATTATGGGATCTTTTCTGCTGGACTACTTCGGCTGGTCGTATGTATTCCG
GGTGATAGGACTGATGGGCATCGCATGGGCGCTGGTGCTGCGCTACTATG
CAATGGCCGGCGAGCGAAACCGAATCATTAATATTGCCACGCCATCCCGA
CTGTGCGCGAACAAGAGTCCGGCAGAGACGTCAGCCGTGCCTTGGTTGCG
ATACTTTCGTAGGCTGTCCTTCTGGGCCTGTGTGCTGACTCACGCCTGCG
AGATGAACTGCTTCTTCGTGCTACTCTCCTGGCTGCCTACATACTTCCAC
GACGGCTTTCCACACGCCAAGGGTTGGGTAGTGAACATGATCCCGTGGCT
TGCCCTGCCACCGTGCACGCTATTCGCCAAGTACTTGACCACCAGATTAC
TCGCTCGCGAATGGCACACGACGACGGTGCGCAAGGTCATCCAAAGTTGC
TGCTTTGCCGCTCAGAATCTGGCCCTGTTTGTGATGAGCCGCACCTCGGA
CTTCCATACGGCGCTCATCTGCATGACCATTATCATTGGCGGCACGGGCT
TCCACAACAACGCGGTAACAGTGAATCCCCAAGACCTGGCACCTCTGCAT
TCGGGCAGCGTCTTTGGCCTGATGAACACAGTGGGCGCGATTCCTGGCTT
TCTCGGAGTATACTTGGCCGGACACATTCTGGAGCTCACACAAAGCTGGC
CGATGGTGTTCAGCGCCGCTGCTGGCATCAATTTGGTTGGCTGGATCATA
TTTATAGTCTTTGGTTCGGCGGAAGCCATCGTTGCAAGCTTTCTAGACCA
T
BO10480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-RA | 1320 | CG15438-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-RA | 1846 | CG15438-RA | 208..1525 | 16..1333 | 6590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4446991..4447854 | 1333..470 | 4320 | 100 | Minus |
2L | 23513712 | 2L | 4447906..4448296 | 472..82 | 1955 | 100 | Minus |
2L | 23513712 | 2L | 4448359..4448428 | 85..16 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:44 has no hits.
BO10480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:19 Download gff for
BO10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-RA | 1..1320 | 17..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:45 Download gff for
BO10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-RA | 205..1536 | 11..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:29 Download gff for
BO10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 209..1525 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:19 Download gff for
BO10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-RA | 205..1536 | 11..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:46 Download gff for
BO10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 209..1525 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:46 Download gff for
BO10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4446989..4447851 | 473..1335 | 99 | <- | Minus |
2L | 4447906..4448293 | 85..472 | 100 | <- | Minus |
2L | 4448360..4448427 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:29 Download gff for
BO10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4448360..4448427 | 17..84 | 100 | | Minus |
arm_2L | 4446989..4447851 | 473..1335 | 99 | <- | Minus |
arm_2L | 4447906..4448293 | 85..472 | 100 | <- | Minus |
BO10480.pep Sequence
Translation from 16 to 1351
> BO10480.pep
MDEKLKYSLLRGELVDTQSIWTRHEKRVWFITLITGTCMLYSTRTTMPLL
VPAVASAQKWSKTDSGTVLSSFFWGYTLTQVVGGYFSDRFGGQRVILFAA
IGWSLITFLMPTIIWTAGSIKSYAIPFIVAIRILNGALQGVHFPSMISLT
SQNLCPNERSSFFGLLTAGSALGTLLTGIMGSFLLDYFGWSYVFRVIGLM
GIAWALVLRYYAMAGERNRIINIATPSRLCANKSPAETSAVPWLRYFRRL
SFWACVLTHACEMNCFFVLLSWLPTYFHDGFPHAKGWVVNMIPWLALPPC
TLFAKYLTTRLLAREWHTTTVRKVIQSCCFAAQNLALFVMSRTSDFHTAL
ICMTIIIGGTGFHNNAVTVNPQDLAPLHSGSVFGLMNTVGAIPGFLGVYL
AGHILELTQSWPMVFSAAAGINLVGWIIFIVFGSAEAIVASFLDH
BO10480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-PA | 439 | CG15438-PA | 1..439 | 1..439 | 2325 | 100 | Plus |
CG4288-PA | 502 | CG4288-PA | 22..464 | 13..436 | 432 | 26.4 | Plus |
CG4288-PB | 502 | CG4288-PB | 22..464 | 13..436 | 432 | 26.4 | Plus |
CG15096-PC | 491 | CG15096-PC | 13..467 | 1..435 | 361 | 25.2 | Plus |
CG15096-PA | 491 | CG15096-PA | 13..467 | 1..435 | 361 | 25.2 | Plus |