Clone BO10480 Report

Search the DGRC for BO10480

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG15438-RA
Protein status:BO10480.pep: validated full length
Sequenced Size:1351

Clone Sequence Records

BO10480.3prime Sequence

871 bp (783 high quality bases) assembled on 2006-04-19

> BO10480.3prime
ATGGTCTAGAAAGCTTGCAACGATGGCTTCCGCCGAACCAAAGACTATAA
ATATGATCCAGCCAACCAAATTGATGCCAGCAGCGGCGCTGAACACCATC
GGCCAGCTTTGTGTGAGCTCCAGAATGTGTCCGGCCAAGTATACTCCGAG
AAAGCCAGGAATCGCGCCCACTGTGTTCATCAGGCCAAAGACGCTGCCCG
AATGCAGAGGTGCCAGGTCTTGGGGATTCACTGTTACCGCGTTGTTGTGG
AAGCCCGTGCCGCCAATGATAATGGTCATGCAGATGAGCGCCGTATGGAA
GTCCGAGGTGCGGCTCATCACAAACAGGGCCAGATTCTGAGCGGCAAAGC
AGCAACTTTGGATGACCTTGCGCACCGTCGTCGTGTGCCATTCGCGAGCG
AGTAATCTGGTGGTCAAGTACTTGGCGAATAGCGTGCACGGTGGCAGGGC
AAGCCACGGGATCATGTTCACTACCCAACCCTTGGCGTGTGGAAAGCCGT
CGTGGAAGTATGTAGGCAGCCAGGAGAGTAGCACGAAGAAGCAGTTCATC
TCGCAGGCGTGAGTCAGCACACAGGCCCAGAAGGACAGCCTACGAAAGTA
TCGCAACCAAGGCACGGCTGACGTCTCTGCCGGACTCTTGTTCGCGCACA
GTCGGGATGGCGTGGCAATATTAATGATTCGGTTTCGCTCGCCGGCCATT
GCATAGTAGCGCAGCACCAGCGCCCATGCGATGCCCATCAGTCCTATCAC
CCGGAATACATACGACCAGCCGAAGTAGTCCAGCAGAAAAGATCCCATAA
TCCCAGTCAGAAGAGTACCTAGAGCCGATCCCGCTGTGAGCAGCCCAAAG
AAGCTGCTTCTCTCATTGGGG

BO10480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15438-PA 1320 CG15438-RA 465..1317 871..19 4265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-RA 1846 CG15438-RA 673..1525 871..19 4265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4446991..4447843 19..871 4265 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:32:03 has no hits.

BO10480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:19 Download gff for BO10480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15438-PA 465..1320 15..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:45 Download gff for BO10480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15438-PA 465..1320 15..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:37:17 Download gff for BO10480.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 673..1534 8..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:17 Download gff for BO10480.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 673..1534 8..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:17 Download gff for BO10480.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4446982..4447843 8..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:37:17 Download gff for BO10480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4446982..4447843 8..871 99   Plus

BO10480.5prime Sequence

895 bp (758 high quality bases) assembled on 2006-04-19

> BO10480.5prime
GAAGTTATCAGTCGACATGGACGAGAAGCTAAAATATTCTCTGCTGCGCG
GGGAACTGGTGGACACGCAGAGCATTTGGACCAGGCATGAGAAGCGTGTC
TGGTTCATCACCCTTATTACGGGCACCTGTATGCTGTACTCCACCCGCAC
CACTATGCCACTTCTTGTGCCGGCCGTGGCATCCGCCCAAAAGTGGAGCA
AAACCGACTCGGGCACTGTGCTCAGCTCCTTCTTCTGGGGCTACACACTC
ACGCAGGTTGTGGGCGGCTACTTCAGCGACCGCTTTGGAGGCCAGCGAGT
CATTCTGTTTGCCGCAATCGGCTGGTCGCTTATCACATTCCTAATGCCCA
CTATCATCTGGACGGCGGGCTCCATCAAGAGTTACGCTATTCCCTTCATT
GTTGCCATTCGAATCCTGAACGGCGCTCTTCAGGGCGTGCACTTTCCTAG
CATGATTAGTCTAACCAGTCAGAATTTGTGCCCCAATGAGAGAAGCAGCT
TCTTTGGGCTGCTCACAGCGGGATCGGCTCTAGGTACTCTTCTGACTGGG
ATTATGGGATCTTTTCTGCTGGACTACTTCGGCTGGTCGTATGTATTCCG
GGTGATAGGACTGATGGGCATCGCATGGGCGCTGGTGCTGCGCTACTATG
CAATGGCCGGCGAGCGAAACCGAATCATTAATATTGCCACGCCATCCCGA
CTGTGCGCGAACAAGAGTCCGGCAGAGACGTCAGCCGTGCCTTGGTTGCG
ATACTTTCGTAGGCTGTCCTTCTGGGCCTGTGTGCTGACTCACGCCTGCG
AGATGAACTGCTTCTTCGTGCTACTCTCCTGGCTGCCTACATACTTCCAC
GACGGCTTTTCACACGCCAAGGGTTGGGTAGTGAACATGATCCCG

BO10480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15438-PA 1320 CG15438-RA 1..879 17..895 4370 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-RA 1846 CG15438-RA 208..1087 16..895 4385 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4447429..4447854 895..470 2115 99.8 Minus
2L 23513712 2L 4447906..4448296 472..82 1955 100 Minus
2L 23513712 2L 4448359..4448428 85..16 350 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:51:56 has no hits.

BO10480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:20 Download gff for BO10480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15438-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:47 Download gff for BO10480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15438-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:28 Download gff for BO10480.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 203..1087 11..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:18:19 Download gff for BO10480.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 203..1087 11..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:18:19 Download gff for BO10480.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4447429..4447851 473..895 99 <- Minus
2L 4447906..4448293 85..472 100 <- Minus
2L 4448360..4448433 11..84 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:28 Download gff for BO10480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4447429..4447851 473..895 99 <- Minus
arm_2L 4447906..4448293 85..472 100 <- Minus
arm_2L 4448360..4448433 11..84 97   Minus

BO10480.complete Sequence

1351 bp (1351 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631786

> BO10480.complete
GAAGTTATCAGTCGACATGGACGAGAAGCTAAAATATTCTCTGCTGCGCG
GGGAACTGGTGGACACGCAGAGCATTTGGACCAGGCATGAGAAGCGTGTC
TGGTTCATCACCCTTATTACGGGCACCTGTATGCTGTACTCCACCCGCAC
CACTATGCCACTTCTTGTGCCGGCCGTGGCATCCGCCCAAAAGTGGAGCA
AAACCGACTCGGGCACTGTGCTCAGCTCCTTCTTCTGGGGCTACACACTC
ACGCAGGTTGTGGGCGGCTACTTCAGCGACCGCTTTGGAGGCCAGCGAGT
CATTCTGTTTGCCGCAATCGGCTGGTCGCTTATCACATTCCTAATGCCCA
CTATCATCTGGACGGCGGGCTCCATCAAGAGTTACGCTATTCCCTTCATT
GTTGCCATTCGAATCCTGAACGGCGCTCTTCAGGGCGTGCACTTTCCTAG
CATGATTAGTCTAACCAGTCAGAATTTGTGCCCCAATGAGAGAAGCAGCT
TCTTTGGGCTGCTCACAGCGGGATCGGCTCTAGGTACTCTTCTGACTGGG
ATTATGGGATCTTTTCTGCTGGACTACTTCGGCTGGTCGTATGTATTCCG
GGTGATAGGACTGATGGGCATCGCATGGGCGCTGGTGCTGCGCTACTATG
CAATGGCCGGCGAGCGAAACCGAATCATTAATATTGCCACGCCATCCCGA
CTGTGCGCGAACAAGAGTCCGGCAGAGACGTCAGCCGTGCCTTGGTTGCG
ATACTTTCGTAGGCTGTCCTTCTGGGCCTGTGTGCTGACTCACGCCTGCG
AGATGAACTGCTTCTTCGTGCTACTCTCCTGGCTGCCTACATACTTCCAC
GACGGCTTTCCACACGCCAAGGGTTGGGTAGTGAACATGATCCCGTGGCT
TGCCCTGCCACCGTGCACGCTATTCGCCAAGTACTTGACCACCAGATTAC
TCGCTCGCGAATGGCACACGACGACGGTGCGCAAGGTCATCCAAAGTTGC
TGCTTTGCCGCTCAGAATCTGGCCCTGTTTGTGATGAGCCGCACCTCGGA
CTTCCATACGGCGCTCATCTGCATGACCATTATCATTGGCGGCACGGGCT
TCCACAACAACGCGGTAACAGTGAATCCCCAAGACCTGGCACCTCTGCAT
TCGGGCAGCGTCTTTGGCCTGATGAACACAGTGGGCGCGATTCCTGGCTT
TCTCGGAGTATACTTGGCCGGACACATTCTGGAGCTCACACAAAGCTGGC
CGATGGTGTTCAGCGCCGCTGCTGGCATCAATTTGGTTGGCTGGATCATA
TTTATAGTCTTTGGTTCGGCGGAAGCCATCGTTGCAAGCTTTCTAGACCA
T

BO10480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-RA 1320 CG15438-PA 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-RA 1846 CG15438-RA 208..1525 16..1333 6590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4446991..4447854 1333..470 4320 100 Minus
2L 23513712 2L 4447906..4448296 472..82 1955 100 Minus
2L 23513712 2L 4448359..4448428 85..16 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:54:44 has no hits.

BO10480.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:19 Download gff for BO10480.complete
Subject Subject Range Query Range Percent Splice Strand
CG15438-RA 1..1320 17..1337 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:45 Download gff for BO10480.complete
Subject Subject Range Query Range Percent Splice Strand
CG15438-RA 205..1536 11..1344 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:29 Download gff for BO10480.complete
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 209..1525 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:19 Download gff for BO10480.complete
Subject Subject Range Query Range Percent Splice Strand
CG15438-RA 205..1536 11..1344 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:46 Download gff for BO10480.complete
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 209..1525 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:46 Download gff for BO10480.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4446989..4447851 473..1335 99 <- Minus
2L 4447906..4448293 85..472 100 <- Minus
2L 4448360..4448427 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:29 Download gff for BO10480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4448360..4448427 17..84 100   Minus
arm_2L 4446989..4447851 473..1335 99 <- Minus
arm_2L 4447906..4448293 85..472 100 <- Minus

BO10480.pep Sequence

Translation from 16 to 1351

> BO10480.pep
MDEKLKYSLLRGELVDTQSIWTRHEKRVWFITLITGTCMLYSTRTTMPLL
VPAVASAQKWSKTDSGTVLSSFFWGYTLTQVVGGYFSDRFGGQRVILFAA
IGWSLITFLMPTIIWTAGSIKSYAIPFIVAIRILNGALQGVHFPSMISLT
SQNLCPNERSSFFGLLTAGSALGTLLTGIMGSFLLDYFGWSYVFRVIGLM
GIAWALVLRYYAMAGERNRIINIATPSRLCANKSPAETSAVPWLRYFRRL
SFWACVLTHACEMNCFFVLLSWLPTYFHDGFPHAKGWVVNMIPWLALPPC
TLFAKYLTTRLLAREWHTTTVRKVIQSCCFAAQNLALFVMSRTSDFHTAL
ICMTIIIGGTGFHNNAVTVNPQDLAPLHSGSVFGLMNTVGAIPGFLGVYL
AGHILELTQSWPMVFSAAAGINLVGWIIFIVFGSAEAIVASFLDH

BO10480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-PA 439 CG15438-PA 1..439 1..439 2325 100 Plus
CG4288-PA 502 CG4288-PA 22..464 13..436 432 26.4 Plus
CG4288-PB 502 CG4288-PB 22..464 13..436 432 26.4 Plus
CG15096-PC 491 CG15096-PC 13..467 1..435 361 25.2 Plus
CG15096-PA 491 CG15096-PA 13..467 1..435 361 25.2 Plus