Clone Sequence Records
BO10481.3prime Sequence
979 bp (844 high quality bases) assembled on 2006-04-19
> BO10481.3prime
ATGGTCTAGAAAGCTTGCCTTGCCCTTTTTCGACTCCTTCTTTTTGCTGC
CGGACGAGCTGACGCCCTCGTCCTTCTCCTTCTTCTCCTTCTTTTCGGGC
TTCTCCTCGGGATGATCTTCATAGGCAAAGAGCACCTTCAGCTCGCCGCG
GATGAGGGCCACCAGGAGGGGCGTGCCCATGCAGGCTGGCACCAGGTAGA
GCAGAGCCGGCTGCGCATGCTTGAACACATGCATCACGAAGATGGTGGCC
AGCAGGCCAAGGAAGTAGGCAATCAGCGTGGAGTAGAAGTAGATGCGCGT
CTTGCGCTTCTTGCTGTCGTCGAAGCGCAGCAGCAGAGCGATGAAGATGC
CCGGAATAACGATGTCGCCTAGTCCCAGCATTGCGAAGTTCGAGGCGTTC
AGGCCGTTCTCGATCAGGTCCTGGGGGAACACTAGCTTGATGGGCGCCTC
GAAGCTCTTGGCCACGGTGACCATCACGTTGGTGCCGAATACCCAGAAGA
TGTCGTAGAAGAACAGGCCGCTCAGCAAGATGACGCCCGTGACGAAGTTG
TTCAGGTGCAGCATCTCCACGCCGTTGATGGCGAAGGCCAGACCGAACAG
ATTGTTGGCGATCCAGTGCTTCTTGAGCAGGTACCACACTCCGATCGCCG
AGGAGATCACCAGGCAGACAATGTCGTGCGTGGAGAACTTGTAGTTAACG
ATGTCTTCCTTGTGCTTGCCCTCCCCCTTAGTGAACAGGATGTGGAAGGG
CACCTTCGGCACGGCGGCGGGCATCAGCGAGTTGATCACCGGACTGAGCA
GGTGCGCCAGAGCAATAACTCCCAGCACGAAGAAGTAGCCGGTGAGCAGG
TAGTTGATGTGCACCTTCTGGAAGATCTTGAAGAACAGGTACAGCCCCGA
GAGGGCTGCCGACGCGATCAGCGGGAAGTACATGGCGTCCTTCTTGGTCA
TCGTGTCCGCCTTCTCGCCCGTTGACTTC
BO10481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11840-PA | 1170 | Spp-RA | 207..1167 | 979..19 | 4730 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spp-RA | 1736 | CG11840-RA | 318..1278 | 979..19 | 4760 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 543416..544268 | 125..977 | 4220 | 99.6 | Plus |
| 2L | 23513712 | 2L | 543244..543349 | 19..124 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:56:22 has no hits.
BO10481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:21 Download gff for
BO10481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-PA | 207..1170 | 18..979 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:48 Download gff for
BO10481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11840-PA | 207..1170 | 18..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:19:33 Download gff for
BO10481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 318..1284 | 13..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:55 Download gff for
BO10481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 318..1284 | 13..979 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:55 Download gff for
BO10481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 543238..543349 | 13..124 | 97 | <- | Plus |
| 2L | 543416..544270 | 125..979 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:19:33 Download gff for
BO10481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 543238..543349 | 13..124 | 97 | <- | Plus |
| arm_2L | 543416..544270 | 125..979 | 99 | | Plus |
BO10481.5prime Sequence
942 bp (875 high quality bases) assembled on 2006-04-19
> BO10481.5prime
GAAGTTATCAGTCGACATGGCGGAGGAAGTCATCGGAACCGTTAAGGAGG
TGCTGAAGGGCATCATCGAGAATGTGAACGCGCCGAAGAACGAGTCGGCG
CCGGGCGAGAAGAAGCCCTCGACTCCGGAGGGCATGGCGGTGGCCTACAG
CAGCCTGGTGGTGATGGCCATGCTGCCCATCATCTTCGGCTCCATCCGCT
CCGTGAAGCTGCACAAGCTGAAGAAGTCAACGGGCGAGAAGGCGGACACG
ATGACCAAGAAGGACGCCATGTACTTCCCGCTGATCGCGTCGGCAGCCCT
CTTCGGGCTGTACCTGTTCTTCAAGATCTTCCAGAAGGTGCACATCAACT
ACCTGCTCACCGGCTACTTCTTCGTGCTGGGAGTTATTGCTCTGGCGCAC
CTGCTCAGTCCGGTGATCAACTCGCTGATGCCCGCCGCCGTGCCGAAGGT
GCCCTTCCACATCCTGTTCACTAAGGGGGAGGGCAAGCACAAGGAAGACA
TCGTTAACTACAAGTTCTCCACGCACGACATTGTCTGCCTGGTGATCTCC
TCGGCGATCGGAGTGTGGTACCTGCTCAAGAAGCACTGGATCGCCAACAA
TCTGTTCGGTCTGGCCTTCGCCATCAACGGCGTGGAGATGCTGCACCTGA
ACAACTTCGTCACGGGCGTCATCTTGCTGAGCGGCCTGTTCTTCTACGAC
ATCTTCTGGGTATTCGGCACCAACGTGATGGTCACCGTGGCCAAGAGCTT
CGAGGCGCCCATCAAGCTAGTGTTCCCCCAGGACCTGATCGAGAACGGCC
TGAACGCCTCGAACTTCGCAATGCTGGGACTAGGCGACATCGTTATTCCG
GGCATCTTCATCGCTCTGCTGCTGCGCTTCGACGACAGCAAGAAGCGCAA
GACGCGCATCTACTTCTACTCCACGCTGATTGGCTACTTCCT
BO10481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11840-PA | 1170 | Spp-RA | 1..926 | 17..942 | 4580 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spp-RA | 1736 | CG11840-RA | 111..1037 | 16..942 | 4605 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 543551..544268 | 942..225 | 3560 | 99.7 | Minus |
| 2L | 23513712 | 2L | 544333..544543 | 226..16 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:33:21 has no hits.
BO10481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:22 Download gff for
BO10481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:50 Download gff for
BO10481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11840-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:38 Download gff for
BO10481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 103..1037 | 9..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:37 Download gff for
BO10481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 103..1037 | 9..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:37 Download gff for
BO10481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 543551..544266 | 227..942 | 99 | <- | Minus |
| 2L | 544333..544546 | 9..226 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:38 Download gff for
BO10481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 543551..544266 | 227..942 | 99 | <- | Minus |
| arm_2L | 544333..544546 | 9..226 | 98 | | Minus |
BO10481.complete Sequence
1201 bp (1201 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631787
> BO10481.complete
GAAGTTATCAGTCGACATGGCGGAGGAAGTCATCGGAACCGTTAAGGAGG
TGCTGAAGGGCATCATCGAGAATGTGAACGCGCCGAAGAACGAGTCGGCG
CCGGGCGAGAAGAAGCCCTCGACTCCGGAGGGCATGGCGGTGGCCTACAG
CAGCCTGGTGGTGATGGCCATGCTGCCCATCATCTTCGGCTCCATCCGCT
CCGTGAAGCTGCACAAGCTGAAGAAGTCAACGGGCGAGAAGGCGGACACG
ATGACCAAGAAGGACGCCATGTACTTCCCGCTGATCGCGTCGGCAGCCCT
CTTCGGGCTGTACCTGTTCTTCAAGATCTTCCAGAAGGTGCACATCAACT
ACCTGCTCACCGGCTACTTCTTCGTGCTGGGAGTTATTGCTCTGGCGCAC
CTGCTCAGTCCGGTGATCAACTCGCTGATGCCCGCCGCCGTGCCGAAGGT
GCCCTTCCACATCCTGTTCACTAAGGGGGAGGGCAAGCACAAGGAAGACA
TCGTTAACTACAAGTTCTCCACGCACGACATTGTCTGCCTGGTGATCTCC
TCGGCGATCGGAGTGTGGTACCTGCTCAAGAAGCACTGGATCGCCAACAA
TCTGTTCGGTCTGGCCTTCGCCATCAACGGCGTGGAGATGCTGCACCTGA
ACAACTTCGTCACGGGCGTCATCTTGCTGAGCGGCCTGTTCTTCTACGAC
ATCTTCTGGGTATTCGGCACCAACGTGATGGTCACCGTGGCCAAGAGCTT
CGAGGCGCCCATCAAGCTAGTGTTCCCCCAGGACCTGATCGAGAACGGCC
TGAACGCCTCGAACTTCGCAATGCTGGGACTAGGCGACATCGTTATTCCG
GGCATCTTCATCGCTCTGCTGCTGCGCTTCGACGACAGCAAGAAGCGCAA
GACGCGCATCTACTTCTACTCCACGCTGATTGCCTACTTCCTTGGCCTGC
TGGCCACCATCTTCGTGATGCATGTGTTCAAGCATGCGCAGCCGGCTCTG
CTCTACCTGGTGCCAGCCTGCATGGGCACGCCCCTCCTGGTGGCCCTCAT
CCGCGGCGAGCTGAAGGTGCTCTTTGCCTATGAAGATCATCCCGAGGAGA
AGCCCGAAAAGAAGGAGAAGAAGGAGAAGGACGAGGGCGTCAGCTCGTCC
GGCAGCAAAAAGAAGGAGTCGAAAAAGGGCAAGGCAAGCTTTCTAGACCA
T
BO10481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spp-RA | 1170 | CG11840-PA | 1..1167 | 17..1183 | 5820 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spp-RA | 1736 | CG11840-RA | 111..1278 | 16..1183 | 5825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 543416..544268 | 1077..225 | 4250 | 99.9 | Minus |
| 2L | 23513712 | 2L | 544333..544543 | 226..16 | 1055 | 100 | Minus |
| 2L | 23513712 | 2L | 543244..543349 | 1183..1078 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:45:50 has no hits.
BO10481.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:20 Download gff for
BO10481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 1..1170 | 17..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:47 Download gff for
BO10481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 77..1258 | 9..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:12 Download gff for
BO10481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 112..1278 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:20 Download gff for
BO10481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 77..1258 | 9..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:13 Download gff for
BO10481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spp-RA | 112..1278 | 17..1185 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:13 Download gff for
BO10481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 543242..543349 | 1078..1185 | 98 | <- | Minus |
| 2L | 543416..544266 | 227..1077 | 99 | <- | Minus |
| 2L | 544333..544542 | 17..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:12 Download gff for
BO10481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 543242..543349 | 1078..1185 | 98 | <- | Minus |
| arm_2L | 543416..544266 | 227..1077 | 99 | <- | Minus |
| arm_2L | 544333..544542 | 17..226 | 100 | | Minus |
BO10481.pep Sequence
Translation from 16 to 1201
> BO10481.pep
MAEEVIGTVKEVLKGIIENVNAPKNESAPGEKKPSTPEGMAVAYSSLVVM
AMLPIIFGSIRSVKLHKLKKSTGEKADTMTKKDAMYFPLIASAALFGLYL
FFKIFQKVHINYLLTGYFFVLGVIALAHLLSPVINSLMPAAVPKVPFHIL
FTKGEGKHKEDIVNYKFSTHDIVCLVISSAIGVWYLLKKHWIANNLFGLA
FAINGVEMLHLNNFVTGVILLSGLFFYDIFWVFGTNVMVTVAKSFEAPIK
LVFPQDLIENGLNASNFAMLGLGDIVIPGIFIALLLRFDDSKKRKTRIYF
YSTLIAYFLGLLATIFVMHVFKHAQPALLYLVPACMGTPLLVALIRGELK
VLFAYEDHPEEKPEKKEKKEKDEGVSSSGSKKKESKKGKASFLDH
BO10481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spp-PA | 389 | CG11840-PA | 1..389 | 1..389 | 1983 | 100 | Plus |
| SppL-PF | 417 | CG17370-PF | 49..414 | 46..366 | 335 | 27.9 | Plus |
| SppL-PC | 417 | CG17370-PC | 49..414 | 46..366 | 335 | 27.9 | Plus |
| SppL-PB | 417 | CG17370-PB | 49..414 | 46..366 | 335 | 27.9 | Plus |
| SppL-PA | 417 | CG17370-PA | 49..414 | 46..366 | 335 | 27.9 | Plus |
