Clone BO10484 Report

Search the DGRC for BO10484

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptpar-6-RA
Protein status:BO10484.pep: validated full length
Sequenced Size:1087

Clone Sequence Records

BO10484.3prime Sequence

942 bp (784 high quality bases) assembled on 2006-04-19

> BO10484.3prime
ATGGTCTAGAAAGCTTGCCAAATGCAGCACTCCATCCTTGACATCGCTGG
CCATTATCGTGGACGCATTGGAGGCTGCCTGCTGGTGGTGCGACGAGGGT
GATGAGGATAATGGCGGCTGATGGTTGTGATTGCCGGCTGACGTGGACGT
TGGACTCTCGTCGAGGGTGACGCCCGTTAAGTCCACAATATCGTCCTGAT
CGTCGTGCTCGATCTCGTCGGAGGTGTTTGTATTATTAGTGTGATGTGAC
CCACTGGACAGCTGGCTGTTCCTTGAAAAGGATCCGCGATGTGTGGACGT
CAGTGTGCGCTGATTGGCCGGCTTCACGGTGATTATCAGATTGGAGCTGT
TGGCCACCATCATGTCGGTGACTTGATCCAGAGTCTTGCCAGCCACTTCG
ATGCCATTTACCTCGATCACCTCATCGTTGACGGCCAGCAGGCCAGTACT
TTCGGCCAGACCGCCCGGAACCAAACGGGATATAAAAATGCCCGGCTGCT
TCTCTAGCCCACTGGCCGTCACCCTGACAGAGGTGCCATCCCGTATGTAG
AATCCCAGGGGCTTATCGCTGCCGTGCTTCAGTAGCCGCACTCTTCTATG
CGTTTCCGGCACTATATCCACATCTATAATGGCCGAGACTTGACGGAAAT
CGTGCGGTATGGATATCGATGGCGCCTTTGTCTTCACTGGCGTATGGCCC
ATCAGTATGCTGCCGATGAGGTTTCTCGGTTTCATCGTTCCAAAGCCAGA
GTACTCATTAAGATCATCCTTTCGCTGCACAATGACCCCGTAAAGTGGAC
GTGCTGTTTTCAGGGCCCGGCCGAAGTTATCGTCGTTGTTAATCGGCAAC
AGATCATTGTCCCGCGGATCGATGTAGAGTATGAGAAACTGGATGTTGGT
CAGCTTGTGCAGCTGCTCAATGAGGGATGCGAATTTGTCGAA

BO10484.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5884-PA 1056 par-6-RA 284..1053 788..19 3850 100 Minus
CG5884-PB 1056 par-6-RB 284..1053 788..19 3850 100 Minus
CG5884-PA 1056 par-6-RA 130..280 942..792 755 100 Minus
CG5884-PB 1056 par-6-RB 130..280 942..792 755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-RB 2564 CG5884-RB 429..1352 942..19 4575 99.8 Minus
par-6-RA 3032 CG5884-RA 429..1352 942..19 4575 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17704667..17705416 768..19 3750 100 Minus
X 23542271 X 17704426..17704604 942..764 835 97.8 Minus
Blast to na_te.dros performed on 2015-02-12 13:08:36 has no hits.

BO10484.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:27 Download gff for BO10484.3prime
Subject Subject Range Query Range Percent Splice Strand
par-6-PB 132..1056 18..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:57 Download gff for BO10484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5884-PB 132..1056 18..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:57:16 Download gff for BO10484.3prime
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 429..1359 11..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:38:06 Download gff for BO10484.3prime
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 429..1359 11..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:38:06 Download gff for BO10484.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17704426..17704600 768..942 98 -> Minus
X 17704668..17705423 11..767 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:57:16 Download gff for BO10484.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17598459..17598633 768..942 98 -> Minus
arm_X 17598701..17599456 11..767 99   Minus

BO10484.5prime Sequence

971 bp (832 high quality bases) assembled on 2006-04-19

> BO10484.5prime
GAAGTTATCAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAA
CGGCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCA
GAGTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGA
CAAATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGT
TTCTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAAC
AACGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACG
GGTCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAA
CGATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCA
GTGAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGT
CTCGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGC
GGCTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGAT
GGCACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCAT
TTTTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGC
TGGCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGC
AAGACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCT
GATAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATC
GCGGATCCTTTTCAAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACT
AATAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGACGATAT
TGTGGACTTNACGGGCGTCACCCTCGACGAGAGTCAAACGTCCACGTCAG
CCGGCAATCACAACCATCAGC

BO10484.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5884-PA 1056 par-6-RA 1..955 17..971 4731 99.7 Plus
CG5884-PB 1056 par-6-RB 1..955 17..971 4731 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-RB 2564 CG5884-RB 300..1254 17..971 4749 99.8 Plus
par-6-RA 3032 CG5884-RA 300..1254 17..971 4749 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17704667..17705318 320..971 3234 99.7 Plus
X 23542271 X 17704370..17704604 90..324 1160 99.6 Plus
X 23542271 X 17703651..17703725 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:24:58 has no hits.

BO10484.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:28 Download gff for BO10484.5prime
Subject Subject Range Query Range Percent Splice Strand
par-6-PB 1..955 17..971 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:58 Download gff for BO10484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5884-PB 1..955 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:35 Download gff for BO10484.5prime
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 295..1254 10..971 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:20 Download gff for BO10484.5prime
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 295..1254 10..971 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:20 Download gff for BO10484.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17703646..17703725 10..91 95 -> Plus
X 17704372..17704600 92..320 100 -> Plus
X 17704668..17705318 321..971 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:35 Download gff for BO10484.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17597679..17597758 10..91 95 -> Plus
arm_X 17598405..17598633 92..320 100 -> Plus
arm_X 17598701..17599351 321..971 99   Plus

BO10484.complete Sequence

1087 bp (1087 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ638675

> BO10484.complete
GAAGTTATCAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAA
CGGCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCA
GAGTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGA
CAAATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGT
TTCTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAAC
AACGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACG
GGTCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAA
CGATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCA
GTGAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGT
CTCGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGC
GGCTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGAT
GGCACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCAT
TTTTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGC
TGGCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGC
AAGACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCT
GATAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATC
GCGGATCCTTTTCAAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACT
AATAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGACGATAT
TGTGGACTTAACGGGCGTCACCCTCGACGAGAGTCCAACGTCCACGTCAG
CCGGCAATCACAACCATCAGCCGCCATTATCCTCATCACCCTCGTCGCAC
CACCAGCAGGCAGCCTCCAATGCGTCCACGATAATGGCCAGCGATGTCAA
GGATGGAGTGCTGCATTTGGCAAGCTTTCTAGACCAT

BO10484.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-RB 1056 CG5884-PB 1..1053 17..1069 5265 100 Plus
par-6-RA 1056 CG5884-PA 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-RB 2564 CG5884-RB 300..1352 17..1069 5265 100 Plus
par-6-RA 3032 CG5884-RA 300..1352 17..1069 5265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17704667..17705416 320..1069 3750 100 Plus
X 23542271 X 17704370..17704604 90..324 1160 99.6 Plus
X 23542271 X 17703651..17703725 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:10:15 has no hits.

BO10484.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:22 Download gff for BO10484.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 1..1056 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:51 Download gff for BO10484.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 318..1382 10..1077 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:27:58 Download gff for BO10484.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 300..1352 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:23 Download gff for BO10484.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 318..1382 10..1077 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:22 Download gff for BO10484.complete
Subject Subject Range Query Range Percent Splice Strand
par-6-RA 300..1352 17..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:22 Download gff for BO10484.complete
Subject Subject Range Query Range Percent Splice Strand
X 17703651..17703725 17..91 100 -> Plus
X 17704372..17704600 92..320 100 -> Plus
X 17704668..17705416 321..1071 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:27:58 Download gff for BO10484.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17597684..17597758 17..91 100 -> Plus
arm_X 17598405..17598633 92..320 100 -> Plus
arm_X 17598701..17599449 321..1071 99   Plus

BO10484.pep Sequence

Translation from 16 to 1087

> BO10484.pep
MSKNKINTTSATAASDTNLIEVKSKFDAEFRRWSFKRNEAEQSFDKFASL
IEQLHKLTNIQFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQR
KDDLNEYSGFGTMKPRNLIGSILMGHTPVKTKAPSISIPHDFRQVSAIID
VDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRL
VPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK
PANQRTLTSTHRGSFSRNSQLSSGSHHTNNTNTSDEIEHDDQDDIVDLTG
VTLDESPTSTSAGNHNHQPPLSSSPSSHHQQAASNASTIMASDVKDGVLH
LASFLDH

BO10484.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
par-6-PB 351 CG5884-PB 1..351 1..351 1786 100 Plus
par-6-PA 351 CG5884-PA 1..351 1..351 1786 100 Plus
metro-PD 546 CG30021-PD 4..224 11..255 154 25.8 Plus
metro-PC 585 CG30021-PC 4..224 11..255 154 25.8 Plus