Clone Sequence Records
BO10484.3prime Sequence
942 bp (784 high quality bases) assembled on 2006-04-19
> BO10484.3prime
ATGGTCTAGAAAGCTTGCCAAATGCAGCACTCCATCCTTGACATCGCTGG
CCATTATCGTGGACGCATTGGAGGCTGCCTGCTGGTGGTGCGACGAGGGT
GATGAGGATAATGGCGGCTGATGGTTGTGATTGCCGGCTGACGTGGACGT
TGGACTCTCGTCGAGGGTGACGCCCGTTAAGTCCACAATATCGTCCTGAT
CGTCGTGCTCGATCTCGTCGGAGGTGTTTGTATTATTAGTGTGATGTGAC
CCACTGGACAGCTGGCTGTTCCTTGAAAAGGATCCGCGATGTGTGGACGT
CAGTGTGCGCTGATTGGCCGGCTTCACGGTGATTATCAGATTGGAGCTGT
TGGCCACCATCATGTCGGTGACTTGATCCAGAGTCTTGCCAGCCACTTCG
ATGCCATTTACCTCGATCACCTCATCGTTGACGGCCAGCAGGCCAGTACT
TTCGGCCAGACCGCCCGGAACCAAACGGGATATAAAAATGCCCGGCTGCT
TCTCTAGCCCACTGGCCGTCACCCTGACAGAGGTGCCATCCCGTATGTAG
AATCCCAGGGGCTTATCGCTGCCGTGCTTCAGTAGCCGCACTCTTCTATG
CGTTTCCGGCACTATATCCACATCTATAATGGCCGAGACTTGACGGAAAT
CGTGCGGTATGGATATCGATGGCGCCTTTGTCTTCACTGGCGTATGGCCC
ATCAGTATGCTGCCGATGAGGTTTCTCGGTTTCATCGTTCCAAAGCCAGA
GTACTCATTAAGATCATCCTTTCGCTGCACAATGACCCCGTAAAGTGGAC
GTGCTGTTTTCAGGGCCCGGCCGAAGTTATCGTCGTTGTTAATCGGCAAC
AGATCATTGTCCCGCGGATCGATGTAGAGTATGAGAAACTGGATGTTGGT
CAGCTTGTGCAGCTGCTCAATGAGGGATGCGAATTTGTCGAA
BO10484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5884-PA | 1056 | par-6-RA | 284..1053 | 788..19 | 3850 | 100 | Minus |
CG5884-PB | 1056 | par-6-RB | 284..1053 | 788..19 | 3850 | 100 | Minus |
CG5884-PA | 1056 | par-6-RA | 130..280 | 942..792 | 755 | 100 | Minus |
CG5884-PB | 1056 | par-6-RB | 130..280 | 942..792 | 755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-RB | 2564 | CG5884-RB | 429..1352 | 942..19 | 4575 | 99.8 | Minus |
par-6-RA | 3032 | CG5884-RA | 429..1352 | 942..19 | 4575 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17704667..17705416 | 768..19 | 3750 | 100 | Minus |
X | 23542271 | X | 17704426..17704604 | 942..764 | 835 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:08:36 has no hits.
BO10484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:27 Download gff for
BO10484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-PB | 132..1056 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:57 Download gff for
BO10484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5884-PB | 132..1056 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:57:16 Download gff for
BO10484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 429..1359 | 11..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:38:06 Download gff for
BO10484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 429..1359 | 11..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:38:06 Download gff for
BO10484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17704426..17704600 | 768..942 | 98 | -> | Minus |
X | 17704668..17705423 | 11..767 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:57:16 Download gff for
BO10484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17598459..17598633 | 768..942 | 98 | -> | Minus |
arm_X | 17598701..17599456 | 11..767 | 99 | | Minus |
BO10484.5prime Sequence
971 bp (832 high quality bases) assembled on 2006-04-19
> BO10484.5prime
GAAGTTATCAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAA
CGGCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCA
GAGTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGA
CAAATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGT
TTCTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAAC
AACGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACG
GGTCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAA
CGATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCA
GTGAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGT
CTCGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGC
GGCTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGAT
GGCACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCAT
TTTTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGC
TGGCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGC
AAGACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCT
GATAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATC
GCGGATCCTTTTCAAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACT
AATAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGACGATAT
TGTGGACTTNACGGGCGTCACCCTCGACGAGAGTCAAACGTCCACGTCAG
CCGGCAATCACAACCATCAGC
BO10484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5884-PA | 1056 | par-6-RA | 1..955 | 17..971 | 4731 | 99.7 | Plus |
CG5884-PB | 1056 | par-6-RB | 1..955 | 17..971 | 4731 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-RB | 2564 | CG5884-RB | 300..1254 | 17..971 | 4749 | 99.8 | Plus |
par-6-RA | 3032 | CG5884-RA | 300..1254 | 17..971 | 4749 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17704667..17705318 | 320..971 | 3234 | 99.7 | Plus |
X | 23542271 | X | 17704370..17704604 | 90..324 | 1160 | 99.6 | Plus |
X | 23542271 | X | 17703651..17703725 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:24:58 has no hits.
BO10484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:28 Download gff for
BO10484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-PB | 1..955 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:58 Download gff for
BO10484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5884-PB | 1..955 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:35 Download gff for
BO10484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 295..1254 | 10..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:20 Download gff for
BO10484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 295..1254 | 10..971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:20 Download gff for
BO10484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17703646..17703725 | 10..91 | 95 | -> | Plus |
X | 17704372..17704600 | 92..320 | 100 | -> | Plus |
X | 17704668..17705318 | 321..971 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:35 Download gff for
BO10484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17597679..17597758 | 10..91 | 95 | -> | Plus |
arm_X | 17598405..17598633 | 92..320 | 100 | -> | Plus |
arm_X | 17598701..17599351 | 321..971 | 99 | | Plus |
BO10484.complete Sequence
1087 bp (1087 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ638675
> BO10484.complete
GAAGTTATCAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAA
CGGCGGCCAGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCA
GAGTTTCGGAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGA
CAAATTCGCATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGT
TTCTCATACTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAAC
AACGACGATAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACG
GGTCATTGTGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAA
CGATGAAACCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCA
GTGAAGACAAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGT
CTCGGCCATTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGC
GGCTACTGAAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGAT
GGCACCTCTGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCAT
TTTTATATCCCGTTTGGTTCCGGGCGGTCTGGCCGAAAGTACTGGCCTGC
TGGCCGTCAACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGC
AAGACTCTGGATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCT
GATAATCACCGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATC
GCGGATCCTTTTCAAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACT
AATAATACAAACACCTCCGACGAGATCGAGCACGACGATCAGGACGATAT
TGTGGACTTAACGGGCGTCACCCTCGACGAGAGTCCAACGTCCACGTCAG
CCGGCAATCACAACCATCAGCCGCCATTATCCTCATCACCCTCGTCGCAC
CACCAGCAGGCAGCCTCCAATGCGTCCACGATAATGGCCAGCGATGTCAA
GGATGGAGTGCTGCATTTGGCAAGCTTTCTAGACCAT
BO10484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-RB | 1056 | CG5884-PB | 1..1053 | 17..1069 | 5265 | 100 | Plus |
par-6-RA | 1056 | CG5884-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-RB | 2564 | CG5884-RB | 300..1352 | 17..1069 | 5265 | 100 | Plus |
par-6-RA | 3032 | CG5884-RA | 300..1352 | 17..1069 | 5265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17704667..17705416 | 320..1069 | 3750 | 100 | Plus |
X | 23542271 | X | 17704370..17704604 | 90..324 | 1160 | 99.6 | Plus |
X | 23542271 | X | 17703651..17703725 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:10:15 has no hits.
BO10484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:22 Download gff for
BO10484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 1..1056 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:51 Download gff for
BO10484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 318..1382 | 10..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:27:58 Download gff for
BO10484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 300..1352 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:23 Download gff for
BO10484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 318..1382 | 10..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:22 Download gff for
BO10484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-6-RA | 300..1352 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:22 Download gff for
BO10484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17703651..17703725 | 17..91 | 100 | -> | Plus |
X | 17704372..17704600 | 92..320 | 100 | -> | Plus |
X | 17704668..17705416 | 321..1071 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:27:58 Download gff for
BO10484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17597684..17597758 | 17..91 | 100 | -> | Plus |
arm_X | 17598405..17598633 | 92..320 | 100 | -> | Plus |
arm_X | 17598701..17599449 | 321..1071 | 99 | | Plus |
BO10484.pep Sequence
Translation from 16 to 1087
> BO10484.pep
MSKNKINTTSATAASDTNLIEVKSKFDAEFRRWSFKRNEAEQSFDKFASL
IEQLHKLTNIQFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQR
KDDLNEYSGFGTMKPRNLIGSILMGHTPVKTKAPSISIPHDFRQVSAIID
VDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRL
VPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK
PANQRTLTSTHRGSFSRNSQLSSGSHHTNNTNTSDEIEHDDQDDIVDLTG
VTLDESPTSTSAGNHNHQPPLSSSPSSHHQQAASNASTIMASDVKDGVLH
LASFLDH
BO10484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-6-PB | 351 | CG5884-PB | 1..351 | 1..351 | 1786 | 100 | Plus |
par-6-PA | 351 | CG5884-PA | 1..351 | 1..351 | 1786 | 100 | Plus |
metro-PD | 546 | CG30021-PD | 4..224 | 11..255 | 154 | 25.8 | Plus |
metro-PC | 585 | CG30021-PC | 4..224 | 11..255 | 154 | 25.8 | Plus |