Clone BO10485 Report

Search the DGRC for BO10485

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptRbsn-5-RA
Protein status:BO10485.pep: validated full length
Sequenced Size:1549

Clone Sequence Records

BO10485.3prime Sequence

891 bp (838 high quality bases) assembled on 2006-04-19

> BO10485.3prime
ATGGTCTAGAAAGCTTGCGGCCTCTGTGGGTGAGGCGGCGGTGCTTCCCT
GGGACTGGCGCTGTCGCTCGTACACTTCGCGCTGTAGCTCGCGAAGATTT
AGCTCCAGCGTCTCCACCACCTCAAAGTTCATGTCCTGGCGAGCCTGTTT
GATGTAGCCCTTAATGATGTTTATCTGCTCGATCAGCGGATCGTCCAGGC
TGGACTTGCTAGCCGCCTGCGGTGCTGACCAGTTGTTCAGAGATTGAAGA
TCAGACCCTTGGGCAAAGGATCCGCTTTCCGGACCAGGAACTCCAACGTT
GGATTGGTTAGCTGCCATGTTATTTCGTTCGTAGGCTTCCATGGCCATGC
GCTGTTCGGTGAGGATACGCTGCTCCGTTTCCATGCGTCTACGCTCCTGC
ATCTGGCGTATGTGCGATTCCTCTGGCAGTGGGGGCAGCGATAACATTCG
CTCCTTGATGGCTTGGATGCAGCCCAACCGAATGGCCTTCTTTAATGCCT
CCTCCCGGCTGCCTGGTTCACAAAATATGGCTAGAATGCGCTTGCTCCTC
ATGTCCATGGCCTCTGCCACTTGTCCAATCTTGCCGCGCAAAGCACCTGC
ATCCGCCAACGTGAAGATTGTGTCCCCTTCGTTCAAGCTATTGATGATCT
TTAGATACATGTCCAGATCCGGGGTAACTTCTTTTTGTAGTTGACGAATT
TGTTCGTAGACCTGGACGAGGAGTGGGCGACAAGTGCGACTTTCGTGCAT
ATCCTTTCGGGTGTCCAGCAGCCAAAGGCAGTGTTCGCACAGCCGGATGG
CGTTCTCATGCTGATGCAGCTGCTGAAGGGGCTCGCTTCTTGTGGTGGAA
AGACTGGCTAGTTGCATGGCATCTTCCAGGGGCAGGGACTT

BO10485.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8506-PA 1518 CG8506-RA 648..1515 886..19 4340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-RA 1846 CG8506-RA 903..1775 891..19 4350 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8160817..8161427 866..256 3055 100 Minus
2L 23513712 2L 8161492..8161729 256..19 1190 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:18:57 has no hits.

BO10485.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:29 Download gff for BO10485.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8506-PA 643..1518 15..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:55:59 Download gff for BO10485.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8506-PA 643..1518 15..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:44 Download gff for BO10485.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 903..1780 13..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:24 Download gff for BO10485.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 903..1780 13..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:24 Download gff for BO10485.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8160734..8160758 867..891 96 -> Minus
2L 8160817..8161427 256..866 100 -> Minus
2L 8161493..8161734 13..255 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:44 Download gff for BO10485.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8160734..8160758 867..891 96 -> Minus
arm_2L 8160817..8161427 256..866 100 -> Minus
arm_2L 8161493..8161734 13..255 99   Minus

BO10485.5prime Sequence

883 bp (810 high quality bases) assembled on 2006-04-19

> BO10485.5prime
GAAGTTATCAGTCGACATGTCTGGAAATCCTTTCGACAGCGACGAAGATC
AAAGCTCGGCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGC
CGTGCGGATCTCAAGTCCATCGATGTGCTCACGGATCATTTTGCCCGCCA
GCATGCGGAAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCA
AGGCGAAAAAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTGCATCT
GTATCGTCGCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAA
TGGCAACGGAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATG
TATTTAACTATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTC
GAGTACTTTCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAGCGA
AACAAACAAACTAATCATTCGTTTGCACCGCCTGCTTAAGGATCTGCCAG
CGGATTCAGTGCAGCGGCGTCAGCATGAACAGCAAACAGTTGCCTGGCTG
GATGGTAGTTCCGTCAAGTTGTGTCCCAGTTGTGCCAAGAGTTTCCACAT
CGCCCGAAGACAACACCACTGCCGTTTGTGCGGAGGCATAATGTGCAATG
ATTGCTCCAAGTTCCTGCCCCTGGAAGATGCCATGCAACTAGCCAGTCTT
TCCACCACAAGAAGCGAGCCCCTTCAGCAGCTGCATCAGCATGAGAACGC
CATCCGGCTGTGCGAACACTGCCTTTGGCTGCTGGACACCCGAAAGGATA
TGCACGAAAGTCGCACTTGTCGCCCACTCCTCGTCCAGGTCTACAAACAA
ATTCGTCAACTACAAAAAGAAGTTACCCCGGAT

BO10485.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8506-PA 1518 CG8506-RA 1..867 17..883 4310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-RA 1846 CG8506-RA 261..1127 17..883 4320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8160092..8160758 17..683 3335 100 Plus
2L 23513712 2L 8160817..8161016 684..883 985 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 06:33:13 has no hits.

BO10485.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:30 Download gff for BO10485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8506-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:01 Download gff for BO10485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8506-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:37 Download gff for BO10485.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 252..1127 7..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:17 Download gff for BO10485.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 252..1127 7..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:17 Download gff for BO10485.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8160083..8160758 7..683 99 -> Plus
2L 8160817..8161016 684..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:37 Download gff for BO10485.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8160083..8160758 7..683 99 -> Plus
arm_2L 8160817..8161016 684..883 99   Plus

BO10485.complete Sequence

1549 bp assembled on 2006-10-10

GenBank Submission: FJ631790

> BO10485.complete
GAAGTTATCAGTCGACATGTCTGGAAATCCTTTCGACAGCGACGAAGATC
AAAGCTCGGCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGC
CGTGCGGATCTCAAGTCCATCGATGTGCTCACGGATCATTTTGCCCGCCA
GCATGCGGAAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCA
AGGCGAAAAAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTGCATCT
GTATCGTCGCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAA
TGGCAACGGAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATG
TATTTAACTATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTC
GAGTACTTTCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAGCGA
AACAAACAAACTAATCATTCGTTTGCACCGCCTGCTTAAGGATCTGCCAG
CGGATTCAGTGCAGCGGCGTCAGCATGAACAGCAAACAGTTGCCTGGCTG
GATGGTAGTTCCGTCAAGTTGTGTCCCAGTTGTGCCAAGAGTTTCCACAT
CGCCCGAAGACAACACCACTGCCGTTTGTGCGGAGGCATAATGTGCAATG
ATTGCTCCAAGTTCCTGCCCCTGGAAGATGCCATGCAACTAGCCAGTCTT
TCCACCACAAGAAGCGAGCCCCTTCAGCAGCTGCATCAGCATGAGAACGC
CATCCGGCTGTGCGAACACTGCCTTTGGCTGCTGGACACCCGAAAGGATA
TGCACGAAAGTCGCACTTGTCGCCCACTCCTCGTCCAGGTCTACGAACAA
ATTCGTCAACTACAAAAAGAAGTTACCCCGGATCTGGACATGTATCTAAA
GATCATCAATAGCTTGAACGAAGGGGACACAATCTTCACGTTGGCGGATG
CAGGTGCTTTGCGCGGCAAGATTGGACAAGTGGCAGAGGCCATGGACATG
AGGAGCAAGCGCATTCTAGCCATATTTTGTGAACCAGGCAGCCGGGAGGA
GGCATTAAAGAAGGCCATTCGGTTGGGCTGCATCCAAGCCATCAAGGAGC
GAATGTTATCGCTGCCCCCACTGCCAGAGGAATCGCACATACGCCAGATG
CAGGAGCGTAGACGCATGGAAACGGAGCAGCGTATCCTCACCGAACAGCG
CATGGCCATGGAAGCCTACGAACGAAATAACATGGCAGCTAACCAATCCA
ACGTTGGAGTTCCTGGTCCGGAAAGCGGATCCTTTGCCCAAGGGTCTGAT
CTTCAATCTCTGAACAACTGGTCAGCACCGCAGGCGGCTAGCAAGTCCAG
CCTGGACGATCCGCTGATCGAGCAGATAAACATCATTAAGGGCTACATCA
AACAGGCTCGCCAGGACATGAACTTTGAGGTGGTGGAGACGCTGGAGCTA
AATCTTCGCGAGCTACAGCGCGAAGTGTACGAGCGACAGCGCCAGTCCCA
GGGAAGCACCGCCGCCTCACCCACAGAGGCCGCAAGCTTTCTAGACCAT

BO10485.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-RA 1518 CG8506-PA 1..1515 17..1531 7575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-RA 1846 CG8506-RA 261..1775 17..1531 7575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8160092..8160758 17..683 3335 100 Plus
2L 23513712 2L 8160817..8161427 684..1294 3055 100 Plus
2L 23513712 2L 8161492..8161729 1294..1531 1190 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:16:14 has no hits.

BO10485.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:32 Download gff for BO10485.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 1..1518 17..1535 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:42 Download gff for BO10485.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 244..1772 7..1537 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:08 Download gff for BO10485.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 261..1775 17..1533 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:32 Download gff for BO10485.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 245..1773 7..1537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:48 Download gff for BO10485.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 261..1775 17..1533 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:48 Download gff for BO10485.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8161493..8161729 1295..1533 99   Plus
2L 8160092..8160758 17..683 100 -> Plus
2L 8160817..8161427 684..1294 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:08 Download gff for BO10485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8160092..8160758 17..683 100 -> Plus
arm_2L 8160817..8161427 684..1294 100 -> Plus
arm_2L 8161493..8161729 1295..1533 99   Plus

BO10485.pep Sequence

Translation from 16 to 1549

> BO10485.pep
MSGNPFDSDEDQSSASGEILEGFLCPICRADLKSIDVLTDHFARQHAEEE
DALKSFKDIFTKAKKKILNPFEDEKGASVSSPAGSSSSAAGKNPNGNGDR
NGPSNARSRLNVFNYMARQQPGAECSHFEYFQSIRNPRLERYASETNKLI
IRLHRLLKDLPADSVQRRQHEQQTVAWLDGSSVKLCPSCAKSFHIARRQH
HCRLCGGIMCNDCSKFLPLEDAMQLASLSTTRSEPLQQLHQHENAIRLCE
HCLWLLDTRKDMHESRTCRPLLVQVYEQIRQLQKEVTPDLDMYLKIINSL
NEGDTIFTLADAGALRGKIGQVAEAMDMRSKRILAIFCEPGSREEALKKA
IRLGCIQAIKERMLSLPPLPEESHIRQMQERRRMETEQRILTEQRMAMEA
YERNNMAANQSNVGVPGPESGSFAQGSDLQSLNNWSAPQAASKSSLDDPL
IEQINIIKGYIKQARQDMNFEVVETLELNLRELQREVYERQRQSQGSTAA
SPTEAASFLDH

BO10485.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-PA 505 CG8506-PA 1..505 1..505 2610 100 Plus