Clone Sequence Records
BO10487.3prime Sequence
893 bp (831 high quality bases) assembled on 2006-04-19
> BO10487.3prime
ATGGTCTAGAAAGCTTGCCAAATATCTGTAAATATTATAATAATTATCAC
GTTCCAAATATTCACGCTCCACCAGGTAGTCAAGTCTTTTCTTGATAAAA
CTCACTTGTGGCTTTACCCGATCTTTAAGCTCCTCATAAACGAGTGAAAT
TAATTCCGAATATTCCAGTTGCTTTTGACCTTTCATAATGCGCACTATTG
CAGCATCCACTTGCTTGTCTCGCCGTATTTTCAATTCAATTTCGCTTTTC
TCTTCAATCTTTCTCATTTTTCTGGGCAGGGGCTCATTGCAGAAGAGTCG
GCGTTTCCGGTTTGTAAAGTCCATGTTTATTTCTATATAATTTACTTTAT
TTACTTCGATATAAACCAGAAACTTAATCTGTTTTAATGCCTCTTGGAGG
GTCTCCAGCTCGACTCCCAAAGCAGTCACCAATTCCTGCTCCGTAAATCG
TTCATGCCGATTGAATAGCATCAGAACGGCCATTTGCAAAGTGCTTACCT
CGAGAATATAGACCGACTGATTCAAATGACAGGTTATCTCACCAGAGGAT
AATTCGTTATTAAGTTGTATAATTGCCTTGCTTTGTAATTTTCTTGCTTC
GTAAAAAATACGAAACTCCTTCCAAGCTTGCTGCAGTTCGTCGGGCAACG
TGAGGTTAAAATTCTCAAAACTCCCATCATTTTTGAAGCATTTTGGACGA
AAATCGAATCCTAACTTGATCCCCTTGCTATTCAAGTGATCTTGAAACTC
TTTTTTTAGGGTTCTCAACTTATCTACATCTCTTAACTGCACATATATAC
ATCTAGTTACAAAGTTTGCCATTTTTTTATTCAGAAGGGAATACATTATG
GACTCAACGCCGTCCGAGGTGGATGTTTCATTGATTTGTCGAA
BO10487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-PA | 2013 | CG11261-RA | 1136..2010 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-RA | 2215 | CG11261-RA | 1252..2126 | 893..19 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13009931..13010434 | 390..893 | 2520 | 100 | Plus |
| 3L | 28110227 | 3L | 13009488..13009861 | 19..392 | 1870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:34:23 has no hits.
BO10487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:33 Download gff for
BO10487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-PA | 1138..2013 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:05 Download gff for
BO10487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-PA | 1138..2013 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:00 Download gff for
BO10487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 1252..2126 | 19..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:19:39 Download gff for
BO10487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 1252..2126 | 19..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:19:39 Download gff for
BO10487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13009488..13009859 | 19..390 | 100 | <- | Plus |
| 3L | 13009932..13010434 | 391..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:00 Download gff for
BO10487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13002588..13002959 | 19..390 | 100 | <- | Plus |
| arm_3L | 13003032..13003534 | 391..893 | 100 | | Plus |
BO10487.5prime Sequence
932 bp (776 high quality bases) assembled on 2006-04-19
> BO10487.5prime
GAAGTTATCAGTCGACATGAATCGGGTTAAAAGAATATCTAATTACTTTG
ACTCTATGCTACCCCTGATCGATAATATTTTGCAAGTAGTGAATCAGATC
TTCGATGATTACACTTCCTTTGATGGCCAAAAGCTCATGCACTTATACCA
CCTCATTTACAAGCAGTGCGCGGCGGAGCGCAATTGGAATAATCCAGCCC
AGAAGAACGGGAGAAGTCTTTACATTGTGCTATCCGACTGCCTGATGAAG
CGACTAAAAAACATAGCATGGGTAATGGAGAACCAACTCGACGACAACAA
ACCAATTCGACTGATCGCCAAATATTTAGAGCACTGGGTACCCTATCAAA
GGTCATGTGAGAAACTGAACCTAGCTTGCTACCACTTCAACCGCAACTGG
GTGGAACGGGAGCGGCTTAAGGGAGACAAAGAAACTTATCCGATATATCG
CTTGGCCATGATTAGCTGGAAGGAGCTGGTCTTCGAGCCCAGCGTCACGA
TTCTCGCCGCCATTAGGCTGATTTTGAGTCAGATGCCCAGGGAATACAAT
AAATCATTGGAATACCAAGTATACCAGGTGCTCCAATCCATTGTGGAACT
GTACGCCAACGATAAGTACCAAGATGTGTCCTTGCCTTCTAGGATAGACA
AAATTTTCACTGAGAAGGTGATGGATTTCTACAAGTCAACGACGTTGCAC
GAATTCCAAAAGATCGTCGTATCCAATGACTACAAGGATTTCAAGCATTT
CCTTAGGTACGCATGCCTAGCCATGCCAGAAATTGAGAATGGGACACAAT
TTAAGGCAATACTAAAAAGATACCTCGCTGCGAGGCTGCAGGAGACGAGG
CTGTCAGGCAAGGAATATATCCCAAGCTTCTTGGGACTTTGTCGCGGTCC
TTTGCAGCGAGCATTGCGGGACCACACAAAAT
BO10487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-PA | 2013 | CG11261-RA | 1..856 | 17..872 | 4255 | 99.8 | Plus |
| CG11261-PA | 2013 | CG11261-RA | 861..916 | 877..932 | 280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-RA | 2215 | CG11261-RA | 117..1032 | 17..932 | 4520 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13010654..13011569 | 932..17 | 4520 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:24:08 has no hits.
BO10487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:34 Download gff for
BO10487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:06 Download gff for
BO10487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:14 Download gff for
BO10487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 112..1032 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:22 Download gff for
BO10487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 112..1032 | 9..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:22 Download gff for
BO10487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13010654..13011574 | 9..932 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:14 Download gff for
BO10487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13003754..13004674 | 9..932 | 99 | | Minus |
BO10487.complete Sequence
2044 bp (2044 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631791
> BO10487.complete
GAAGTTATCAGTCGACATGAATCGGGTTAAAAGAATATCTAATTACTTTG
ACTCTATGCTACCCCTGATCGATAATATTTTGCAAGTAGTGAATCAGATC
TTCGATGATTACACTTCCTTTGATGGCCAAAAGCTCATGCACTTATACCA
CCTCATTTACAAGCAGTGCGCGGCGGAGCGCAATTGGAATAATCCAGCCC
AGAAGAACGGGAGAAGTCTTTACATTGTGCTATCCGACTGCCTGATGAAG
CGACTAAAAAACATAGCATGGGTAATGGAGAACCAACTCGACGACAACAA
ACCAATTCGACTGATCGCCAAATATTTAGAGCACTGGGTACCCTATCAAA
GGTCATGTGAGAAACTGAACCTAGCTTGCTACCACTTCAACCGCAACTGG
GTGGAACGGGAGCGGCTTAAGGGAGACAAAGAAACTTATCCGATATATCG
CTTGGCCATGATTAGCTGGAAGGAGCTGGTCTTCGAGCCCAGCGTCACGA
TTCTCGCCGCCATTAGGCTGATTTTGAGTCAGATGCCCAGGGAATACAAT
AAATCATTGGAATACCAAGTATACCAGGTGCTCCAATCCATTGTGGAACT
GTACGCCAACGATAAGTACCAAGATGTGTCCTTGCCTTCTAGGATAGACA
AAATTTTCACTGAGAAGGTGATGGATTTCTACAAGTCAACGACGTTGCAC
GAATTCCAAAAGATCGTCGTATCCAATGACTACAAGGATTTCAAGCATTT
CCTTAGGTACGCATGCCTAGCCATGCCAGAAATTGAGAATGGGACACAAT
TTAAGGCAATACTAAAAAGATACCTCGCTGCGAGGCTGCAGGAGACGAGG
CTGTCAGGCAAGGATTATATCCAAGCCTTCTTGGGACTTTGTCGCGGTCC
TTTGCAGCGAGCATTGCGGGACCACACAAAATTGGCGGAAGTCGTGGATG
CGGTGTGCAAAGAAGAAATTAATAGAAAGGGCCAGATAATTGACCCCACC
CGTCTGCTTGTCACATATGCCAACGAACTTATGACCAAAAGGCAGGAGTC
CGAGGAAGCAATTATTGATGAACTTAAACGGATCGTTAAATGCGTGGAGT
TTTTAAGCGATGAGTACAAATTTATTGACATGTATTTGAAAGCACTTCGG
ATTCGACAAATCAATGAAACATCCACCTCGGACGGCGTTGAGTCCATAAT
GTATTCCCTTCTGAATAAAAAAATGGCAAACTTTGTAACTAGATGTATAT
ATGTGCAGTTAAGAGATGTAGATAAGTTGAGAACCCTAAAAAAAGAGTTT
CAAGATCACTTGAATAGCAAGGGGATCAAGTTAGGATTCGATTTTCGTCC
AAAATGCTTCAAAAATGATGGGAGTTTTGAGAATTTTAACCTCACGTTGC
CCGACGAACTGCAGCAAGCTTGGAAGGAGTTTCGTATTTTTTACGAAGCA
AGAAAATTACAAAGCAAGGCAATTATACAACTTAATAACGAATTATCCTC
TGGTGAGATAACCTGTCATTTGAATCAGTCGGTCTATATTCTCGAGGTAA
GCACTTTGCAAATGGCCGTTCTGATGCTATTCAATCGGCATGAACGATTT
ACGGAGCAGGAATTGGTGACTGCTTTGGGAGTCGAGCTGGAGACCCTCCA
AGAGGCATTAAAACAGATTAAGTTTCTGGTTTATATCGAAGTAAATAAAG
TAAATTATATAGAAATAAACATGGACTTTACAAACCGGAAACGCCGACTC
TTCTGCAATGAGCCCCTGCCCAGAAAAATGAGAAAGATTGAAGAGAAAAG
CGAAATTGAATTGAAAATACGGCGAGACAAGCAAGTGGATGCTGCAATAG
TGCGCATTATGAAAGGTCAAAAGCAACTGGAATATTCGGAATTAATTTCA
CTCGTTTATGAGGAGCTTAAAGATCGGGTAAAGCCACAAGTGAGTTTTAT
CAAGAAAAGACTTGACTACCTGGTGGAGCGTGAATATTTGGAACGTGATA
ATTATTATAATATTTACAGATATTTGGCAAGCTTTCTAGACCAT
BO10487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-RA | 2013 | CG11261-PA | 1..2010 | 17..2026 | 10050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-RA | 2215 | CG11261-RA | 117..2126 | 17..2026 | 10050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13009931..13011569 | 1655..17 | 8195 | 100 | Minus |
| 3L | 28110227 | 3L | 13009488..13009861 | 2026..1653 | 1870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:11:56 has no hits.
BO10487.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:32 Download gff for
BO10487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 1..2013 | 17..2027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:55 Download gff for
BO10487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 108..2122 | 9..2026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:41 Download gff for
BO10487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 117..2126 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:32 Download gff for
BO10487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 108..2122 | 9..2026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:23 Download gff for
BO10487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 117..2126 | 17..2028 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:23 Download gff for
BO10487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13009486..13009859 | 1655..2028 | 99 | <- | Minus |
| 3L | 13009932..13011569 | 17..1654 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:41 Download gff for
BO10487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13002586..13002959 | 1655..2028 | 99 | <- | Minus |
| arm_3L | 13003032..13004669 | 17..1654 | 100 | | Minus |
BO10487.pep Sequence
Translation from 16 to 2044
> BO10487.pep
MNRVKRISNYFDSMLPLIDNILQVVNQIFDDYTSFDGQKLMHLYHLIYKQ
CAAERNWNNPAQKNGRSLYIVLSDCLMKRLKNIAWVMENQLDDNKPIRLI
AKYLEHWVPYQRSCEKLNLACYHFNRNWVERERLKGDKETYPIYRLAMIS
WKELVFEPSVTILAAIRLILSQMPREYNKSLEYQVYQVLQSIVELYANDK
YQDVSLPSRIDKIFTEKVMDFYKSTTLHEFQKIVVSNDYKDFKHFLRYAC
LAMPEIENGTQFKAILKRYLAARLQETRLSGKDYIQAFLGLCRGPLQRAL
RDHTKLAEVVDAVCKEEINRKGQIIDPTRLLVTYANELMTKRQESEEAII
DELKRIVKCVEFLSDEYKFIDMYLKALRIRQINETSTSDGVESIMYSLLN
KKMANFVTRCIYVQLRDVDKLRTLKKEFQDHLNSKGIKLGFDFRPKCFKN
DGSFENFNLTLPDELQQAWKEFRIFYEARKLQSKAIIQLNNELSSGEITC
HLNQSVYILEVSTLQMAVLMLFNRHERFTEQELVTALGVELETLQEALKQ
IKFLVYIEVNKVNYIEINMDFTNRKRRLFCNEPLPRKMRKIEEKSEIELK
IRRDKQVDAAIVRIMKGQKQLEYSELISLVYEELKDRVKPQVSFIKKRLD
YLVEREYLERDNYYNIYRYLASFLDH
BO10487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-PA | 670 | CG11261-PA | 1..670 | 1..670 | 3454 | 100 | Plus |
| Cul1-PD | 774 | CG1877-PD | 11..774 | 5..671 | 505 | 25.8 | Plus |
| Cul1-PA | 774 | CG1877-PA | 11..774 | 5..671 | 505 | 25.8 | Plus |
| Cul1-PB | 774 | CG1877-PB | 11..774 | 5..671 | 505 | 25.8 | Plus |
| Cul1-PC | 774 | CG1877-PC | 11..774 | 5..671 | 505 | 25.8 | Plus |
