Clone BO10491 Report

Search the DGRC for BO10491

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG17930-RA
Protein status:BO10491.pep: validated full length
Sequenced Size:1540

Clone Sequence Records

BO10491.3prime Sequence

901 bp (784 high quality bases) assembled on 2006-04-19

> BO10491.3prime
ATGGTCTAGAAAGCTTGCGTAGGCCATGACATCGTGGACCCGGCGGAATC
GTTCGCCTGCCTGTCTTAGCGTCAATCCTCGGGTTTCTGGCATTAGAACG
GCAAAAGCTACGAGGCCTATTACCATAATAATTCCGACAGCGACAAAGTA
CGTGTAATAGAACTCTGCGGTGGGAACAAACTTGACGATCACAATGATAT
GTATCACCTGCTCCAAACACACGATCAGGCCAATCAAGAAGGGTTTCACT
CTCATCGGAAAAGCCTCGCCCAGATAAGCGGATGAGCTGCAGATGAAGAA
ACCGGCGAAGAACTGGAATGCCATGCCCAGACGGCACACTTGCCACATAA
AGTAATCGTCGAAGATGTGCCCGTAGTCCCCGTAGACTCCGGCCATGCCC
AGCATTAATCCAGCCATGCACATGAGTCCAAGTAGTGAGACAAATTTCCG
GCCCACGGTGTCCAGAACGGCGAAGGTGATCAGGGCACCGATCAGACGAA
GAAGTCCAAATATAATCGTGGGCCAGGAGTGCAGGGTGCCCTCCACCAGC
TCCGTGGTTGTCAGTATTGAATATGACAGTGGCACCGAGAAGGTGAAAGC
AACGAAGCAGCGGAAGAGCAGCAGCTTGAGAAAGGGCATCATAGACTCTC
CCAGCTGCTCGCCTACTCCTTGGGCGCTGCCTTCCACCACGTATAGCTTT
GCCTCGTCGTAGGCTCGATCTCCAGCCTCTCGAGTCCAATAGGATCCCAT
TAGCTGCTTCACACTGGCACGTGCCTTCTGCTCCTGGTTCTGGCGGATAT
AGAAGATCGGCGAGTCGATCGTGATGGCTACACTTCCCAGCGCAATGGCC
GTAAAAACGATTCCAAAAATTCCGTGTACTCGATTGATGGTCATGCCAAA
T

BO10491.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-PA 1509 CG17930-RA 628..1506 897..19 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-RA 1653 CG17930-RA 718..1600 901..19 4400 99.9 Minus
CG17929-RB 1670 CG17929-RB 1261..1334 309..236 205 85.1 Minus
CG6901-RA 1581 CG6901-RA 1193..1263 323..253 190 84.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16328687..16329569 901..19 4400 99.9 Minus
3R 32079331 3R 16326922..16326995 309..236 205 85.1 Minus
3R 32079331 3R 16324740..16324810 323..253 190 84.5 Minus
Blast to na_te.dros performed 2015-02-11 10:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7048..7115 596..661 137 69.1 Plus

BO10491.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:37 Download gff for BO10491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17930-PA 624..1509 18..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:10 Download gff for BO10491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17930-PA 624..1509 18..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:25:11 Download gff for BO10491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 718..1600 19..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:24 Download gff for BO10491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 718..1600 19..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:24 Download gff for BO10491.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16328687..16329569 19..901 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:25:11 Download gff for BO10491.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12154409..12155291 19..901 99   Minus

BO10491.5prime Sequence

941 bp (789 high quality bases) assembled on 2006-04-19

> BO10491.5prime
GAAGTTATCAGTCGACATGACGACCACATATGTCACTGCGGGTCCAGTGC
CCGTCCAGCAAACCACATACATCACCACTGGACCCCAGCAGACCACGTAT
ATCACCAATGGACGCCAACAACAACCACCACCGCCCCCACCACCAACCAC
GGTGATCATCACCACCCAATCGAACAGCCGATGGGCAACCCCTACTCAAA
CGCAATCTGGAACAGCAGCTACCCTTCTCTTTGTGTATGCTGGTATGGAC
ATGGCCCAAGGTCTTGGTTGGAACTTGACTGCCGTTTCCGCCAACACCCT
GGAGTTCCAGTACAGTTGGTTTATTGGCGTTATTATCGGAGCTGTGGTGT
CCGCCATTACATCAGCATTTCTGCCCAAAATAGTATTTTATGGTCTGGGT
GGTGTGATGAACCTAATTGACGCCATTATCTTTGTGAGTGCTCCATATGA
GTACGAGTCGATCCTGGCCGCCCGATATGTGGGAGGAGTGGGCATTGGGT
TAATCACTGTGCCATTCCTAATCCACAGCGCAGAGATCGCTTCGAGTACC
AACAGAGGAACCTGCTGTGCATTGGAGCAATATGGTCTGGCATTGGGAGT
GGCCATTCAAGTAATCTACGACTCACAGTGGTCTCAGGGATTGGGCATGA
CCATCAATCGAGTACACGGAATTTTTGGAATCGTTTTTACGGCCATTGCG
CTGGGAAGTGTAGCCATCACGATCGACTCGCCGATCTTCTATATCCGCCA
GAACCAGGAGCAGAAGGCACGTGCCAGTGTGAAGCAGCTAATGGGATCCT
ATTGGACTCGAGAGGCTGGAGATCGAGCCTACGACGAGGCAAAGCTATAC
GTGGTGGAAAGCAGCGCCCAAGGAGTAGGCGAGCAGCTGGAAGAGTCTAT
GATGCCCTTTCTCAAGCTGCTGCTCCTCCGCTGCTTCGTTG

BO10491.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-PA 1509 CG17930-RA 1..925 17..941 4550 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-RA 1653 CG17930-RA 95..1019 17..941 4580 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16328439..16328988 392..941 2705 99.5 Plus
3R 32079331 3R 16327943..16328144 17..218 1010 100 Plus
3R 32079331 3R 16328202..16328378 216..392 885 100 Plus
Blast to na_te.dros performed 2015-02-11 09:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7060..7135 935..860 128 63.2 Minus

BO10491.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:38 Download gff for BO10491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17930-PA 1..925 17..941 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:11 Download gff for BO10491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17930-PA 1..925 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:52:01 Download gff for BO10491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 87..1019 10..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:37 Download gff for BO10491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 87..1019 10..941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:37 Download gff for BO10491.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16327935..16328144 10..218 98 -> Plus
3R 16328205..16328377 219..391 100 -> Plus
3R 16328439..16328988 392..941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:52:01 Download gff for BO10491.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12153657..12153866 10..218 98 -> Plus
arm_3R 12153927..12154099 219..391 100 -> Plus
arm_3R 12154161..12154710 392..941 99   Plus

BO10491.complete Sequence

1540 bp (1540 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631792

> BO10491.complete
GAAGTTATCAGTCGACATGACGACCACATATGTCACTGCGGGTCCAGTGC
CCGTCCAGCAAACCACATACATCACCACTGGACCCCAGCAGACCACGTAT
ATCACCAATGGACGCCAACAACAACCACCACCGCCCCCACCACCAACCAC
GGTGATCATCACCACCCAATCGAACAGCCGATGGGCAACCCCTACTCAAA
CGCAATCTGGAACAGCAGCTACCCTTCTCTTTGTGTATGCTGGTATGGAC
ATGGCCCAAGGTCTTGGTTGGAACTTGACTGCCGTTTCCGCCAACACCCT
GGAGTTCCAGTACAGTTGGTTTATTGGCGTTATTATCGGAGCTGTGGTGT
CCGCCATTACATCAGCATTTCTGCCCAAAATAGTATTTTATGGTCTGGGT
GGTGTGATGAACCTAATTGACGCCATTATCTTTGTGAGTGCTCCATATGA
GTACGAGTCGATCCTGGCCGCCCGATATGTGGGAGGAGTGGGCATTGGGT
TAATCACTGTGCCATTCCTAATCCACAGCGCAGAGATCGCTTCGAGTACC
AACAGAGGAACCTGCTGTGCATTGGAGCAATATGGTCTGGCATTGGGAGT
GGCCATTCAAGTAATCTACGACTCACAGTGGTCTCAGGGATTGGGCATGA
CCATCAATCGAGTACACGGAATTTTTGGAATCGTTTTTACGGCCATTGCG
CTGGGAAGTGTAGCCATCACGATCGACTCGCCGATCTTCTATATCCGCCA
GAACCAGGAGCAGAAGGCACGTGCCAGTGTGAAGCAGCTAATGGGATCCT
ATTGGACTCGAGAGGCTGGAGATCGAGCCTACGACGAGGCAAAGCTATAC
GTGGTGGAAGGCAGCGCCCAAGGAGTAGGCGAGCAGCTGGGAGAGTCTAT
GATGCCCTTTCTCAAGCTGCTGCTCTTCCGCTGCTTCGTTGCTTTCACCT
TCTCGGTGCCACTGTCATATTCAATACTGACAACCACGGAGCTGGTGGAG
GGCACCCTGCACTCCTGGCCCACGATTATATTTGGACTTCTTCGTCTGAT
CGGTGCCCTGATCACCTTCGCCGTTCTGGACACCGTGGGCCGGAAATTTG
TCTCACTACTTGGACTCATGTGCATGGCTGGATTAATGCTGGGCATGGCC
GGAGTCTACGGGGACTACGGGCACATCTTCGACGATTACTTTATGTGGCA
AGTGTGCCGTCTGGGCATGGCATTCCAGTTCTTCGCCGGTTTCTTCATCT
GCAGCTCATCCGCTTATCTGGGCGAGGCTTTTCCGATGAGAGTGAAACCC
TTCTTGATTGGCCTGATCGTGTGTTTGGAGCAGGTGATACATATCATTGT
GATCGTCAAGTTTGTTCCCACCGCAGAGTTCTATTACACGTACTTTGTCG
CTGTCGGAATTATTATGGTAATAGGCCTCGTAGCTTTTGCCGTTCTAATG
CCAGAAACCCGAGGATTGACGCTAAGACAGGCAGGCGAACGATTCCGCCG
GGTCCACGATGTCATGGCCTACGCAAGCTTTCTAGACCAT

BO10491.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-RA 1509 CG17930-PA 1..1506 17..1522 7530 100 Plus
CG17929-RB 1476 CG17929-PB 1180..1253 1232..1305 205 85.1 Plus
CG6901-RA 1458 CG6901-PA 1145..1215 1218..1288 190 84.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-RA 1653 CG17930-RA 95..1600 17..1522 7530 100 Plus
CG17929-RB 1670 CG17929-RB 1261..1334 1232..1305 205 85.1 Plus
CG6901-RA 1581 CG6901-RA 1193..1263 1218..1288 190 84.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16328439..16329569 392..1522 5655 100 Plus
3R 32079331 3R 16327943..16328144 17..218 1010 100 Plus
3R 32079331 3R 16328202..16328378 216..392 885 100 Plus
3R 32079331 3R 16326922..16326995 1232..1305 205 85.1 Plus
3R 32079331 3R 16324740..16324810 1218..1288 190 84.5 Plus
Blast to na_te.dros performed 2014-11-27 14:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7048..7115 945..880 137 69.1 Minus

BO10491.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:25 Download gff for BO10491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 1..1509 17..1523 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:54 Download gff for BO10491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 86..1599 10..1522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:40 Download gff for BO10491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 95..1600 17..1524 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:25 Download gff for BO10491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 86..1599 10..1522 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:33 Download gff for BO10491.complete
Subject Subject Range Query Range Percent Splice Strand
CG17930-RA 95..1600 17..1524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:33 Download gff for BO10491.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16327943..16328144 17..218 100 -> Plus
3R 16328205..16328377 219..391 100 -> Plus
3R 16328439..16329569 392..1524 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:40 Download gff for BO10491.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12153927..12154099 219..391 100 -> Plus
arm_3R 12153665..12153866 17..218 100 -> Plus
arm_3R 12154161..12155291 392..1524 99   Plus

BO10491.pep Sequence

Translation from 16 to 1540

> BO10491.pep
MTTTYVTAGPVPVQQTTYITTGPQQTTYITNGRQQQPPPPPPPTTVIITT
QSNSRWATPTQTQSGTAATLLFVYAGMDMAQGLGWNLTAVSANTLEFQYS
WFIGVIIGAVVSAITSAFLPKIVFYGLGGVMNLIDAIIFVSAPYEYESIL
AARYVGGVGIGLITVPFLIHSAEIASSTNRGTCCALEQYGLALGVAIQVI
YDSQWSQGLGMTINRVHGIFGIVFTAIALGSVAITIDSPIFYIRQNQEQK
ARASVKQLMGSYWTREAGDRAYDEAKLYVVEGSAQGVGEQLGESMMPFLK
LLLFRCFVAFTFSVPLSYSILTTTELVEGTLHSWPTIIFGLLRLIGALIT
FAVLDTVGRKFVSLLGLMCMAGLMLGMAGVYGDYGHIFDDYFMWQVCRLG
MAFQFFAGFFICSSSAYLGEAFPMRVKPFLIGLIVCLEQVIHIIVIVKFV
PTAEFYYTYFVAVGIIMVIGLVAFAVLMPETRGLTLRQAGERFRRVHDVM
AYASFLDH

BO10491.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17930-PA 502 CG17930-PA 1..502 1..502 2583 100 Plus
CG17929-PB 491 CG17929-PB 1..491 1..502 1165 47.2 Plus
CG6901-PA 485 CG6901-PA 1..485 1..502 1163 46.6 Plus
CG42826-PA 473 CG42826-PA 8..467 41..495 496 26.8 Plus
CG42825-PA 518 CG6640-PB 22..512 10..495 461 29.2 Plus