Clone Sequence Records
BO10491.3prime Sequence
901 bp (784 high quality bases) assembled on 2006-04-19
> BO10491.3prime
ATGGTCTAGAAAGCTTGCGTAGGCCATGACATCGTGGACCCGGCGGAATC
GTTCGCCTGCCTGTCTTAGCGTCAATCCTCGGGTTTCTGGCATTAGAACG
GCAAAAGCTACGAGGCCTATTACCATAATAATTCCGACAGCGACAAAGTA
CGTGTAATAGAACTCTGCGGTGGGAACAAACTTGACGATCACAATGATAT
GTATCACCTGCTCCAAACACACGATCAGGCCAATCAAGAAGGGTTTCACT
CTCATCGGAAAAGCCTCGCCCAGATAAGCGGATGAGCTGCAGATGAAGAA
ACCGGCGAAGAACTGGAATGCCATGCCCAGACGGCACACTTGCCACATAA
AGTAATCGTCGAAGATGTGCCCGTAGTCCCCGTAGACTCCGGCCATGCCC
AGCATTAATCCAGCCATGCACATGAGTCCAAGTAGTGAGACAAATTTCCG
GCCCACGGTGTCCAGAACGGCGAAGGTGATCAGGGCACCGATCAGACGAA
GAAGTCCAAATATAATCGTGGGCCAGGAGTGCAGGGTGCCCTCCACCAGC
TCCGTGGTTGTCAGTATTGAATATGACAGTGGCACCGAGAAGGTGAAAGC
AACGAAGCAGCGGAAGAGCAGCAGCTTGAGAAAGGGCATCATAGACTCTC
CCAGCTGCTCGCCTACTCCTTGGGCGCTGCCTTCCACCACGTATAGCTTT
GCCTCGTCGTAGGCTCGATCTCCAGCCTCTCGAGTCCAATAGGATCCCAT
TAGCTGCTTCACACTGGCACGTGCCTTCTGCTCCTGGTTCTGGCGGATAT
AGAAGATCGGCGAGTCGATCGTGATGGCTACACTTCCCAGCGCAATGGCC
GTAAAAACGATTCCAAAAATTCCGTGTACTCGATTGATGGTCATGCCAAA
T
BO10491.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-PA | 1509 | CG17930-RA | 628..1506 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-RA | 1653 | CG17930-RA | 718..1600 | 901..19 | 4400 | 99.9 | Minus |
CG17929-RB | 1670 | CG17929-RB | 1261..1334 | 309..236 | 205 | 85.1 | Minus |
CG6901-RA | 1581 | CG6901-RA | 1193..1263 | 323..253 | 190 | 84.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16328687..16329569 | 901..19 | 4400 | 99.9 | Minus |
3R | 32079331 | 3R | 16326922..16326995 | 309..236 | 205 | 85.1 | Minus |
3R | 32079331 | 3R | 16324740..16324810 | 323..253 | 190 | 84.5 | Minus |
Blast to na_te.dros performed 2015-02-11 10:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7048..7115 | 596..661 | 137 | 69.1 | Plus |
BO10491.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:37 Download gff for
BO10491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-PA | 624..1509 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:10 Download gff for
BO10491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-PA | 624..1509 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:25:11 Download gff for
BO10491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 718..1600 | 19..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:24 Download gff for
BO10491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 718..1600 | 19..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:24 Download gff for
BO10491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16328687..16329569 | 19..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:25:11 Download gff for
BO10491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12154409..12155291 | 19..901 | 99 | | Minus |
BO10491.5prime Sequence
941 bp (789 high quality bases) assembled on 2006-04-19
> BO10491.5prime
GAAGTTATCAGTCGACATGACGACCACATATGTCACTGCGGGTCCAGTGC
CCGTCCAGCAAACCACATACATCACCACTGGACCCCAGCAGACCACGTAT
ATCACCAATGGACGCCAACAACAACCACCACCGCCCCCACCACCAACCAC
GGTGATCATCACCACCCAATCGAACAGCCGATGGGCAACCCCTACTCAAA
CGCAATCTGGAACAGCAGCTACCCTTCTCTTTGTGTATGCTGGTATGGAC
ATGGCCCAAGGTCTTGGTTGGAACTTGACTGCCGTTTCCGCCAACACCCT
GGAGTTCCAGTACAGTTGGTTTATTGGCGTTATTATCGGAGCTGTGGTGT
CCGCCATTACATCAGCATTTCTGCCCAAAATAGTATTTTATGGTCTGGGT
GGTGTGATGAACCTAATTGACGCCATTATCTTTGTGAGTGCTCCATATGA
GTACGAGTCGATCCTGGCCGCCCGATATGTGGGAGGAGTGGGCATTGGGT
TAATCACTGTGCCATTCCTAATCCACAGCGCAGAGATCGCTTCGAGTACC
AACAGAGGAACCTGCTGTGCATTGGAGCAATATGGTCTGGCATTGGGAGT
GGCCATTCAAGTAATCTACGACTCACAGTGGTCTCAGGGATTGGGCATGA
CCATCAATCGAGTACACGGAATTTTTGGAATCGTTTTTACGGCCATTGCG
CTGGGAAGTGTAGCCATCACGATCGACTCGCCGATCTTCTATATCCGCCA
GAACCAGGAGCAGAAGGCACGTGCCAGTGTGAAGCAGCTAATGGGATCCT
ATTGGACTCGAGAGGCTGGAGATCGAGCCTACGACGAGGCAAAGCTATAC
GTGGTGGAAAGCAGCGCCCAAGGAGTAGGCGAGCAGCTGGAAGAGTCTAT
GATGCCCTTTCTCAAGCTGCTGCTCCTCCGCTGCTTCGTTG
BO10491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-PA | 1509 | CG17930-RA | 1..925 | 17..941 | 4550 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-RA | 1653 | CG17930-RA | 95..1019 | 17..941 | 4580 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16328439..16328988 | 392..941 | 2705 | 99.5 | Plus |
3R | 32079331 | 3R | 16327943..16328144 | 17..218 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 16328202..16328378 | 216..392 | 885 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7060..7135 | 935..860 | 128 | 63.2 | Minus |
BO10491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:38 Download gff for
BO10491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-PA | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:11 Download gff for
BO10491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-PA | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:52:01 Download gff for
BO10491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 87..1019 | 10..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:37 Download gff for
BO10491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 87..1019 | 10..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:37 Download gff for
BO10491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16327935..16328144 | 10..218 | 98 | -> | Plus |
3R | 16328205..16328377 | 219..391 | 100 | -> | Plus |
3R | 16328439..16328988 | 392..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:52:01 Download gff for
BO10491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12153657..12153866 | 10..218 | 98 | -> | Plus |
arm_3R | 12153927..12154099 | 219..391 | 100 | -> | Plus |
arm_3R | 12154161..12154710 | 392..941 | 99 | | Plus |
BO10491.complete Sequence
1540 bp (1540 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631792
> BO10491.complete
GAAGTTATCAGTCGACATGACGACCACATATGTCACTGCGGGTCCAGTGC
CCGTCCAGCAAACCACATACATCACCACTGGACCCCAGCAGACCACGTAT
ATCACCAATGGACGCCAACAACAACCACCACCGCCCCCACCACCAACCAC
GGTGATCATCACCACCCAATCGAACAGCCGATGGGCAACCCCTACTCAAA
CGCAATCTGGAACAGCAGCTACCCTTCTCTTTGTGTATGCTGGTATGGAC
ATGGCCCAAGGTCTTGGTTGGAACTTGACTGCCGTTTCCGCCAACACCCT
GGAGTTCCAGTACAGTTGGTTTATTGGCGTTATTATCGGAGCTGTGGTGT
CCGCCATTACATCAGCATTTCTGCCCAAAATAGTATTTTATGGTCTGGGT
GGTGTGATGAACCTAATTGACGCCATTATCTTTGTGAGTGCTCCATATGA
GTACGAGTCGATCCTGGCCGCCCGATATGTGGGAGGAGTGGGCATTGGGT
TAATCACTGTGCCATTCCTAATCCACAGCGCAGAGATCGCTTCGAGTACC
AACAGAGGAACCTGCTGTGCATTGGAGCAATATGGTCTGGCATTGGGAGT
GGCCATTCAAGTAATCTACGACTCACAGTGGTCTCAGGGATTGGGCATGA
CCATCAATCGAGTACACGGAATTTTTGGAATCGTTTTTACGGCCATTGCG
CTGGGAAGTGTAGCCATCACGATCGACTCGCCGATCTTCTATATCCGCCA
GAACCAGGAGCAGAAGGCACGTGCCAGTGTGAAGCAGCTAATGGGATCCT
ATTGGACTCGAGAGGCTGGAGATCGAGCCTACGACGAGGCAAAGCTATAC
GTGGTGGAAGGCAGCGCCCAAGGAGTAGGCGAGCAGCTGGGAGAGTCTAT
GATGCCCTTTCTCAAGCTGCTGCTCTTCCGCTGCTTCGTTGCTTTCACCT
TCTCGGTGCCACTGTCATATTCAATACTGACAACCACGGAGCTGGTGGAG
GGCACCCTGCACTCCTGGCCCACGATTATATTTGGACTTCTTCGTCTGAT
CGGTGCCCTGATCACCTTCGCCGTTCTGGACACCGTGGGCCGGAAATTTG
TCTCACTACTTGGACTCATGTGCATGGCTGGATTAATGCTGGGCATGGCC
GGAGTCTACGGGGACTACGGGCACATCTTCGACGATTACTTTATGTGGCA
AGTGTGCCGTCTGGGCATGGCATTCCAGTTCTTCGCCGGTTTCTTCATCT
GCAGCTCATCCGCTTATCTGGGCGAGGCTTTTCCGATGAGAGTGAAACCC
TTCTTGATTGGCCTGATCGTGTGTTTGGAGCAGGTGATACATATCATTGT
GATCGTCAAGTTTGTTCCCACCGCAGAGTTCTATTACACGTACTTTGTCG
CTGTCGGAATTATTATGGTAATAGGCCTCGTAGCTTTTGCCGTTCTAATG
CCAGAAACCCGAGGATTGACGCTAAGACAGGCAGGCGAACGATTCCGCCG
GGTCCACGATGTCATGGCCTACGCAAGCTTTCTAGACCAT
BO10491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-RA | 1509 | CG17930-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
CG17929-RB | 1476 | CG17929-PB | 1180..1253 | 1232..1305 | 205 | 85.1 | Plus |
CG6901-RA | 1458 | CG6901-PA | 1145..1215 | 1218..1288 | 190 | 84.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-RA | 1653 | CG17930-RA | 95..1600 | 17..1522 | 7530 | 100 | Plus |
CG17929-RB | 1670 | CG17929-RB | 1261..1334 | 1232..1305 | 205 | 85.1 | Plus |
CG6901-RA | 1581 | CG6901-RA | 1193..1263 | 1218..1288 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16328439..16329569 | 392..1522 | 5655 | 100 | Plus |
3R | 32079331 | 3R | 16327943..16328144 | 17..218 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 16328202..16328378 | 216..392 | 885 | 100 | Plus |
3R | 32079331 | 3R | 16326922..16326995 | 1232..1305 | 205 | 85.1 | Plus |
3R | 32079331 | 3R | 16324740..16324810 | 1218..1288 | 190 | 84.5 | Plus |
Blast to na_te.dros performed 2014-11-27 14:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7048..7115 | 945..880 | 137 | 69.1 | Minus |
BO10491.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:25 Download gff for
BO10491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 1..1509 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:54 Download gff for
BO10491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 86..1599 | 10..1522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:40 Download gff for
BO10491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 95..1600 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:25 Download gff for
BO10491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 86..1599 | 10..1522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:33 Download gff for
BO10491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17930-RA | 95..1600 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:33 Download gff for
BO10491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16327943..16328144 | 17..218 | 100 | -> | Plus |
3R | 16328205..16328377 | 219..391 | 100 | -> | Plus |
3R | 16328439..16329569 | 392..1524 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:40 Download gff for
BO10491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12153927..12154099 | 219..391 | 100 | -> | Plus |
arm_3R | 12153665..12153866 | 17..218 | 100 | -> | Plus |
arm_3R | 12154161..12155291 | 392..1524 | 99 | | Plus |
BO10491.pep Sequence
Translation from 16 to 1540
> BO10491.pep
MTTTYVTAGPVPVQQTTYITTGPQQTTYITNGRQQQPPPPPPPTTVIITT
QSNSRWATPTQTQSGTAATLLFVYAGMDMAQGLGWNLTAVSANTLEFQYS
WFIGVIIGAVVSAITSAFLPKIVFYGLGGVMNLIDAIIFVSAPYEYESIL
AARYVGGVGIGLITVPFLIHSAEIASSTNRGTCCALEQYGLALGVAIQVI
YDSQWSQGLGMTINRVHGIFGIVFTAIALGSVAITIDSPIFYIRQNQEQK
ARASVKQLMGSYWTREAGDRAYDEAKLYVVEGSAQGVGEQLGESMMPFLK
LLLFRCFVAFTFSVPLSYSILTTTELVEGTLHSWPTIIFGLLRLIGALIT
FAVLDTVGRKFVSLLGLMCMAGLMLGMAGVYGDYGHIFDDYFMWQVCRLG
MAFQFFAGFFICSSSAYLGEAFPMRVKPFLIGLIVCLEQVIHIIVIVKFV
PTAEFYYTYFVAVGIIMVIGLVAFAVLMPETRGLTLRQAGERFRRVHDVM
AYASFLDH
BO10491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17930-PA | 502 | CG17930-PA | 1..502 | 1..502 | 2583 | 100 | Plus |
CG17929-PB | 491 | CG17929-PB | 1..491 | 1..502 | 1165 | 47.2 | Plus |
CG6901-PA | 485 | CG6901-PA | 1..485 | 1..502 | 1163 | 46.6 | Plus |
CG42826-PA | 473 | CG42826-PA | 8..467 | 41..495 | 496 | 26.8 | Plus |
CG42825-PA | 518 | CG6640-PB | 22..512 | 10..495 | 461 | 29.2 | Plus |