Clone BO10492 Report

Search the DGRC for BO10492

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCht5-RA
Protein status:BO10492.pep: validated full length
Sequenced Size:1819

Clone Sequence Records

BO10492.3prime Sequence

916 bp (755 high quality bases) assembled on 2006-04-19

> BO10492.3prime
ATGGTCTAGAAAGCTTGCATGGGCCTCGTTGCCCTTCTCCTTGTTCTTCA
TTCGACTGCAGTAGTAACGGTCGCTGTTCTCGATCCAATCGCAGACATTC
AGGACCGTGTGGAAGGCCGTTCCCTCCTTGCACTCGAATTCAACGGGCTT
GCCATGGACACAGCGGAAGTACTTTCGGCAATTGGGATGTGGTACAAAGT
CACGGTTGGTACAATCGATCTCGTTGGGATCGAACTGCGGTCCCATAGGC
TGCTCGGGATCAGTGGGCTCCACTGGATCCACTGGGTAAACAACTTCTTC
TGGCTCCTCAGTGCTCTTTTCCGGAGCAGGAGTGGTTGTTGTGGTGGTTG
TTGTCTTCTTTGGCTTTTTGGGCTTCTTTGTGGTTGGCTTCGGAGTGCTA
CTGCCAACAGTTGGAACAGGACCTGGAGCGGATGTTGGGCTCAATGGACT
TGAAGTTGGCTTCGGTTTTGGTTTTGGCCGCTTGGTAGTGCTAGTAGTTG
GTGCCACCACTGCGCCCTCATCTGGATTTGGCGGTGTTGCTGGCGGCTTT
GCCCACTCAGGCCTTGGTGTTGTCTGCCTTGTAGGTTCCGGAACCCGATA
GTTCTTCATGTTGTCGTACAGGATTTGCGTTAGGCCGTTCTTCCTGCCGC
ACATTCCATGGAAGTCGTCCATATCTATGGCCCAGGTCATGGCACCAGCG
TATCCCCGCTGCTTGATAAAGTCCATCTTGATCTGTATGGATGCCTCGTT
CTCGTAGCCCACCCACTGTGTGTCCTTGTAGGTGTAGGGCACCATGCCAG
CGTCATCCCACTCTACCGTCCATCCCTTGGACTTGTCCATCACCTCGGTG
CAAATTTCGTAGTAGGCCAGAAAGCCGCTGGCATTCGTGTAGGGACCCGG
AGCTCCGCCGCCTGCC

BO10492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9307-PA 1788 CG9307-RA 888..1785 916..19 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-RA 2122 CG9307-RA 1018..1915 916..19 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13769211..13769565 916..562 1775 100 Minus
3R 32079331 3R 13769888..13770093 377..172 1030 100 Minus
3R 32079331 3R 13769623..13769809 562..376 935 100 Minus
3R 32079331 3R 13770371..13770525 173..19 775 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:03:52 has no hits.

BO10492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:39 Download gff for BO10492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9307-PA 888..1788 15..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:13 Download gff for BO10492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9307-PA 888..1788 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:17 Download gff for BO10492.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 1018..1923 9..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:43 Download gff for BO10492.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 1018..1923 9..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:43 Download gff for BO10492.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13769211..13769565 562..916 100 -> Minus
3R 13769624..13769809 376..561 100 -> Minus
3R 13769890..13770093 172..375 100 -> Minus
3R 13770373..13770533 9..171 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:17 Download gff for BO10492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9594933..9595287 562..916 100 -> Minus
arm_3R 9595346..9595531 376..561 100 -> Minus
arm_3R 9595612..9595815 172..375 100 -> Minus
arm_3R 9596095..9596255 9..171 97   Minus

BO10492.5prime Sequence

872 bp (819 high quality bases) assembled on 2006-04-19

> BO10492.5prime
GAAGTTATCAGTCGACATGGTTCGATATATTCCGCTCCTACTCCTGGGAG
TGCTGTGCTCCTGGCCAGCTGCCACTGTGGCCAGTGACCAGGCTTCCCGC
ATCGTCTGCTACTTTAGCAACTGGGCCGTGTATCGAACTGGAATCGGTCG
CTATGGATTGGAGGATGTGCCCGCCGACCTGTGCACCCACATCATCTACT
CCTTTATTGGTGTTAACGATAAGAGCTGGGATGTGCTGGTGATCGATCCT
GAGTTGGATGTGGATCAGGGTGGCTTCAGCAAGTTTACACAATTGAAGAA
ATCTAATCCCAATGTGAAGCTCGAGATAGCAGTGGGTGGCTGGGCGGAAG
GTGGCTCCAAGTACTCACAAATGGTGGCTGTTCGCGATCGCCGGCAAAGT
TTCATACGCAGTGTGGTACGCTTTATGAAGCAGTACAACTTCGATGGATT
CGACTTGGACTGGGAGTATCCGGGAGCCACGGATCGCGGTGGCAACTATG
GGGATAAGGACAAGTTCCTTTATTTTGTTGAGGAACTGCGACGTGCCTTC
GATCGCGAGGGTCGCGGATGGGAAATCACCATGGCGGTGCCCGTTGCCAA
GTTCCGGCTGAACGAAGGTTACCACGTTCCGGAATTGTGCGAAGCGCTGG
ATGCCATTCACGCCATGACCTATGACCTGCGAGGAAACTGGGCCGGATTC
GCCGATGTGCACAGTCCACTCTATAAGCGAAAGCACGACCAATACGCCTA
CGAGAAACTGAATGTGAACGACGGCCTTGCGCTGTGGGAGGAGATGGGCT
GCCCGGCCAACAAGCTGGTGGTGGGTGTTCCTTTCTACGGTCGGACGTTC
ACGCTGAGCAACTCGAACAAGA

BO10492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9307-PA 1788 CG9307-RA 1..856 17..872 4255 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-RA 2122 CG9307-RA 131..986 17..872 4265 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13768091..13768713 20..642 3115 100 Plus
3R 32079331 3R 13768861..13768984 643..766 620 100 Plus
3R 32079331 3R 13769073..13769179 766..872 520 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 19:02:36 has no hits.

BO10492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:41:40 Download gff for BO10492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9307-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:14 Download gff for BO10492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9307-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:09 Download gff for BO10492.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 128..985 14..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:12 Download gff for BO10492.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 128..985 14..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:12 Download gff for BO10492.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13768091..13768713 20..642 100 -> Plus
3R 13768861..13768984 643..766 100 -> Plus
3R 13769074..13769178 767..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:09 Download gff for BO10492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9593813..9594435 20..642 100 -> Plus
arm_3R 9594583..9594706 643..766 100 -> Plus
arm_3R 9594796..9594900 767..871 99   Plus

BO10492.complete Sequence

1819 bp (1819 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631793

> BO10492.complete
GAAGTTATCAGTCGACATGGTTCGATATATTCCGCTCCTACTCCTGGGAG
TGCTGTGCTCCTGGCCAGCTGCCACTGTGGCCAGTGACCAGGCTTCCCGC
ATCGTCTGCTACTTTAGCAACTGGGCCGTGTATCGAACTGGAATCGGTCG
CTATGGATTGGAGGATGTGCCCGCCGACCTGTGCACCCACATCATCTACT
CCTTTATTGGTGTTAACGATAAGAGCTGGGATGTGCTGGTGATCGATCCT
GAGTTGGATGTGGATCAGGGTGGCTTCAGCAAGTTTACACAATTGAAGAA
ATCTAATCCCAATGTGAAGCTCGAGATAGCAGTGGGTGGCTGGGCGGAAG
GTGGCTCCAAGTACTCACAAATGGTGGCTGTTCGCGATCGCCGGCAAAGT
TTCATACGCAGTGTGGTACGCTTTATGAAGCAGTACAACTTCGATGGATT
CGACTTGGACTGGGAGTATCCGGGAGCCACGGATCGCGGTGGCAACTATG
GGGATAAGGACAAGTTCCTTTATTTTGTTGAGGAACTGCGACGTGCCTTC
GATCGCGAGGGTCGCGGATGGGAAATCACCATGGCGGTGCCCGTTGCCAA
GTTCCGGCTGAACGAAGGTTACCACGTTCCGGAATTGTGCGAAGCGCTGG
ATGCCATTCACGCCATGACCTATGACCTGCGAGGAAACTGGGCCGGATTC
GCCGATGTGCACAGTCCACTCTATAAGCGAAAGCACGACCAATACGCCTA
CGAGAAACTGAATGTGAACGACGGCCTTGCGCTGTGGGAGGAGATGGGCT
GCCCGGCCAACAAGCTGGTGGTGGGTGTTCCCTTCTACGGTCGGACGTTC
ACGCTGAGCAACTCGAACAAGAACTACAACATGGGCACCTACATCAATAA
GGAGGCAGGCGGCGGAGCTCCGGGTCCCTACACGAATGCCAGCGGCTTTC
TGGCCTACTACGAAATTTGCACCGAGGTGATGGACAAGTCCAAGGGATGG
ACGGTAGAGTGGGATGACGCTGGCATGGTGCCCTACACCTACAAGGACAC
ACAGTGGGTGGGCTACGAGAACGAGGCATCCATACAGATCAAGATGGACT
TTATCAAGCAGCGGGGATACGCTGGTGCCATGACCTGGGCCATAGATATG
GACGACTTCCATGGAATGTGCGGCAGGAAGAACGGCCTAACGCAAATCCT
GTACGACAACATGAAGAACTATCGGGTTCCGGAACCTACAAGGCAGACAA
CACCAAGGCCTGAGTGGGCAAAGCCGCCAGCAACACCGCCAAATCCAGAT
GAGGGCGCAGTGGTGGCACCAACTACTAGCACTACCAAGCGGCCAAAACC
AAAACCGAAGCCAACTTCAAGTCCATTGAGCCCAACATCCGCTCCAGGTC
CTGTTCCAACTGTTGGCAGTAGCACTCCGAAGCCAACCACAAAGAAGCCC
AAAAAGCCAAAGAAGACAACAACCACCACAACAACCACTCCTGCTCCGGA
AAAGAGCACTGAGGAGCCAGAAGAAGTTGTTTACCCAGTGGATCCAGTGG
AGCCCACTGATCCCGAGCAGCCTATGGGACCGCAGTTCGATCCCAACGAG
ATCGATTGTACCAACCGTGACTTTGTACCACATCCCAATTGCCGAAAGTA
CTTCCGCTGTGTCCATGGCAAGCCCGTTGAATTCGAGTGCAAGGAGGGAA
CGGCCTTCCACACGGTCCTGAATGTCTGCGATTGGATCGAGAACAGCGAC
CGTTACTACTGCAGTCGAATGAAGAACAAGGAGAAGGGCAACGAGGCCCA
TGCAAGCTTTCTAGACCAT

BO10492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-RA 1788 CG9307-PA 1..1785 17..1801 8925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-RA 2122 CG9307-RA 131..1915 17..1801 8925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13768091..13768713 20..642 3115 100 Plus
3R 32079331 3R 13769073..13769565 766..1258 2465 100 Plus
3R 32079331 3R 13769888..13770093 1443..1648 1030 100 Plus
3R 32079331 3R 13769623..13769809 1258..1444 935 100 Plus
3R 32079331 3R 13770371..13770525 1647..1801 775 100 Plus
3R 32079331 3R 13768861..13768984 643..766 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:03:03 has no hits.

BO10492.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:33 Download gff for BO10492.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 1..1788 17..1805 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:57 Download gff for BO10492.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 126..1921 14..1811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:10 Download gff for BO10492.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 131..1915 17..1803 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:33 Download gff for BO10492.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 126..1921 14..1811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:33 Download gff for BO10492.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 131..1915 17..1803 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:33 Download gff for BO10492.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13768088..13768713 17..642 99 -> Plus
3R 13768861..13768984 643..766 100 -> Plus
3R 13769074..13769565 767..1258 100 -> Plus
3R 13769624..13769809 1259..1444 100 -> Plus
3R 13769890..13770093 1445..1648 100 -> Plus
3R 13770373..13770525 1649..1803 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:10 Download gff for BO10492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9593810..9594435 17..642 99 -> Plus
arm_3R 9594583..9594706 643..766 100 -> Plus
arm_3R 9594796..9595287 767..1258 100 -> Plus
arm_3R 9595346..9595531 1259..1444 100 -> Plus
arm_3R 9595612..9595815 1445..1648 100 -> Plus
arm_3R 9596095..9596247 1649..1803 98   Plus

BO10492.pep Sequence

Translation from 16 to 1819

> BO10492.pep
MVRYIPLLLLGVLCSWPAATVASDQASRIVCYFSNWAVYRTGIGRYGLED
VPADLCTHIIYSFIGVNDKSWDVLVIDPELDVDQGGFSKFTQLKKSNPNV
KLEIAVGGWAEGGSKYSQMVAVRDRRQSFIRSVVRFMKQYNFDGFDLDWE
YPGATDRGGNYGDKDKFLYFVEELRRAFDREGRGWEITMAVPVAKFRLNE
GYHVPELCEALDAIHAMTYDLRGNWAGFADVHSPLYKRKHDQYAYEKLNV
NDGLALWEEMGCPANKLVVGVPFYGRTFTLSNSNKNYNMGTYINKEAGGG
APGPYTNASGFLAYYEICTEVMDKSKGWTVEWDDAGMVPYTYKDTQWVGY
ENEASIQIKMDFIKQRGYAGAMTWAIDMDDFHGMCGRKNGLTQILYDNMK
NYRVPEPTRQTTPRPEWAKPPATPPNPDEGAVVAPTTSTTKRPKPKPKPT
SSPLSPTSAPGPVPTVGSSTPKPTTKKPKKPKKTTTTTTTTPAPEKSTEE
PEEVVYPVDPVEPTDPEQPMGPQFDPNEIDCTNRDFVPHPNCRKYFRCVH
GKPVEFECKEGTAFHTVLNVCDWIENSDRYYCSRMKNKEKGNEAHASFLD
H

BO10492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-PA 595 CG9307-PA 1..595 1..595 3281 100 Plus
Cht6-PF 1367 CG43374-PF 13..559 10..576 795 33.7 Plus
Cht6-PG 1580 CG43374-PG 13..559 10..576 795 33.7 Plus
Cht6-PH 2225 CG43374-PH 13..559 10..576 795 33.7 Plus
Cht6-PI 2574 CG43374-PI 13..559 10..576 795 33.7 Plus