Clone BO10494 Report

Search the DGRC for BO10494

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptect-RA
Protein status:BO10494.pep: validated full length
Sequenced Size:1777

Clone Sequence Records

BO10494.3prime Sequence

823 bp (822 high quality bases) assembled on 2006-04-19

> BO10494.3prime
ATGGTCTAGAAAGCTTGCGAGCCTGACAACCTCGACGCCCTGTGGGGCAA
ACAAGGATTCGGCTGCCAATTTCAGTTTCTCGTTGACCAATTTGGCAATT
TTGGGCGTGCGTCGCCACACAAATTCGCGGGTGCGGTCGTGATTGTCCTT
GCTCTCCACCTCCACCTGCTTGGGCTGCTGCACCTTGATGGACATCAGGG
TGGCCCGATCATCGAGCACGCTGAACTTGATGCGACCCATCATCTCGTTC
GTCCTGGCGGTCGCACTCTTCACGCTCCTCACGCTGCCCTTCTTAAAGGA
CTTCTCCACCCGCAGAACCAAGGGACCCAGCGTGAACTTGGCCTTGATCG
TCGAGTTGCGTCCCTCGGCATCGCTGATCACCTTGACATTTCCCACGCGC
TTCAAGGATGCCAGTCCGGAGAGCCTGCCCTCGGCCTTTTGCAGCTTTTC
CACTGCACCAGCGCTGGAGGCTCCCGCCTTGCTGGCCCCCGCTGGCTGAT
TGTAGTTTCCTGATTTCAGGCCCGACGCCTTTTTCGTGTTCTGCTTGTTC
GAGGACTTCTTTTGGCCCGTTTTTGAGCCCGAAACGGTGCGCGTTTCCGC
CTTCGGTGATCCGGAATCGGACTCGGACTCGGTGGCAGGCGATGTGGGGC
TGGGCCTCTTCTCCACGGCTTTGATGGCCAGCTCGGACTGTAATTGCGTC
AATTGCTCCTGCAGCTTCACCGCAGCCTCCCGTGCCTCCTGGTTCGAATT
GACGGAACGGGGCTCCGAGCGCGTGTTCTTCAGCTTCTTGTGACCTCCGA
CCTTGCTGCTCGTCGATTGCTTC

BO10494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6611-PA 1746 ect-RA 939..1743 823..19 4025 100 Minus
CG6611-PB 1746 ect-RB 939..1743 823..19 4025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
ect-RF 2070 CG6611-RF 1096..1900 823..19 4025 100 Minus
ect-RE 1947 CG6611-RE 973..1777 823..19 4025 100 Minus
ect-RB 2046 CG6611-RB 1072..1876 823..19 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10190659..10191277 163..781 3095 100 Plus
3L 28110227 3L 10190446..10190595 19..168 750 100 Plus
3L 28110227 3L 10191572..10191614 781..823 215 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:51:03 has no hits.

BO10494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:41:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:19 Download gff for BO10494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6611-PB 939..1746 16..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:45:08 Download gff for BO10494.3prime
Subject Subject Range Query Range Percent Splice Strand
ect-RB 1072..1876 19..823 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:02 Download gff for BO10494.3prime
Subject Subject Range Query Range Percent Splice Strand
ect-RB 1072..1876 19..823 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:02 Download gff for BO10494.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10190446..10190592 19..165 100 <- Plus
3L 10190662..10191277 166..781 100 <- Plus
3L 10191573..10191614 782..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:45:08 Download gff for BO10494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10183546..10183692 19..165 100 <- Plus
arm_3L 10183762..10184377 166..781 100 <- Plus
arm_3L 10184673..10184714 782..823 100   Plus

BO10494.5prime Sequence

919 bp (768 high quality bases) assembled on 2006-04-19

> BO10494.5prime
GAAGTTATCAGTCGACATGAAGTTCGTGATTTTGCTGTGCGTGCTGAGCG
CGTTGCTGCTGCAAATTGAAGCGTCGCCCCTCCAGCGGCTTTCGAGAAGC
GAGCGGGCTGTTTCCCGCCAACAGACGGTCAACAATGAGGTGGCTCCGGC
GGTAGCTCCTGCCAGCGATGATGACGATGATGACGACGATGAGGACGACG
ATGATGAGCCTGATCTAGGAGATCTGATCGATGACGATGATGATGATGAT
GAGGAGGAGGACGATGACGAGGACGAGGAGGATGATACGCCCCAGGGTCA
GGCTGCTCCAGCGGCCACTGCCAGCGATGATGACGAAGAGGAAGACGATG
ATGATGACGATTATCTGGACAGGCTGTTCGATGATATCCTGGGCGATGAT
GAAGATGAGGATGATGATGACGAGACACCCGCTGCCACCGCCCAGCAGAG
CGCTGTGGCCGCCGCTCCCGCCCAAACTCTGGATGAGGTCGCCCCCGCTG
CCGCCTCCTCCGTGAGCGCCGGTATCTCCGATGGTGTTGATCTGCCCGCC
GAGTCCGGAAATGCCGCTGAGGTCCTGGCCGCTGGAAATGCTGCCGATGA
GTCCGTTTCCGCTGCCGTTGCTCCGGCGCAAAACGCTGCCGCCAGCAGCA
GCAACAACGAAGGTATCGCCGGTGACGACGACGAGGAGGCCGACGATGAT
GATGACGATGACGACGATGACATTATCGGCGATGACATCATCGAGGCCCG
CCGTGAAGCACGTGACCTGAAGAACAACGTCATCGATATGTCCACGGATG
CTTTCCAGGCCCGCCACAACCACTTCATCGATGCCATCTTCTCGAGGATC
AATCGCATTGTTTCGGAAAACTATGATCCCTATGTGGTCAATCTAACGGG
TCGCTCCGTTTTGCCCAAT

BO10494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6611-PA 1746 ect-RA 1..899 17..915 4495 100 Plus
CG6611-PB 1746 ect-RB 1..899 17..915 4495 100 Plus
CG6611-PC 852 ect-RC 1..745 17..761 3725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
ect-RB 2046 CG6611-RB 132..1036 15..919 4510 99.9 Plus
ect-RA 2103 CG6611-RA 189..1093 15..919 4510 99.9 Plus
ect-RF 2070 CG6611-RF 132..1060 15..919 4260 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10195441..10195710 664..395 1350 100 Minus
3L 28110227 3L 10196208..10196435 242..15 1140 100 Minus
3L 28110227 3L 10191650..10191807 919..762 775 99.4 Minus
3L 28110227 3L 10195819..10195972 395..242 770 100 Minus
3L 28110227 3L 10194893..10194997 765..661 525 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:07:31 has no hits.

BO10494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:41:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:20 Download gff for BO10494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6611-PB 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:48 Download gff for BO10494.5prime
Subject Subject Range Query Range Percent Splice Strand
ect-RA 179..1093 3..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:05 Download gff for BO10494.5prime
Subject Subject Range Query Range Percent Splice Strand
ect-RA 179..1093 3..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:05 Download gff for BO10494.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10191650..10191807 762..919 99 <- Minus
3L 10194897..10194995 663..761 100 <- Minus
3L 10195819..10195971 243..395 100 <- Minus
3L 10195443..10195709 396..662 100 <- Minus
3L 10196208..10196445 3..242 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:48 Download gff for BO10494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10184750..10184907 762..919 99 <- Minus
arm_3L 10187997..10188095 663..761 100 <- Minus
arm_3L 10188543..10188809 396..662 100 <- Minus
arm_3L 10188919..10189071 243..395 100 <- Minus
arm_3L 10189308..10189545 3..242 97   Minus

BO10494.complete Sequence

1777 bp (1777 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631794

> BO10494.complete
GAAGTTATCAGTCGACATGAAGTTCGTGATTTTGCTGTGCGTGCTGAGCG
CGTTGCTGCTGCAAATTGAAGCGTCGCCCCTCCAGCGGCTTTCGAGAAGC
GAGCGGGCTGTTTCCCGCCAACAGACGGTCAACAATGAGGTGGCTCCGGC
GGTAGCTCCTGCCAGCGATGATGACGATGATGACGACGATGAGGACGACG
ATGATGAGCCTGATCTAGGAGATCTGATCGATGACGATGATGATGATGAT
GAGGAGGAGGACGATGACGAGGACGAGGAGGATGATACGCCCCAGGGTCA
GGCTGCTCCAGCGGCCACTGCCAGCGATGATGACGAAGAGGAAGACGATG
ATGATGACGATTATCTGGACAGGCTGTTCGATGATATCCTGGGCGATGAT
GAAGATGAGGATGATGATGACGAGACACCCGCTGCCACCGCCCAGCAGAG
CGCTGTGGCCGCCGCTCCCGCCCAAACTCTGGATGAGGTCGCCCCCGCTG
CCGCCTCCTCCGTGAGCGCCGGTATCTCCGATGGTGTTGATCTGCCCGCC
GAGTCCGGAAATGCCGCTGAGGTCCTGGCCGCTGGAAATGCTGCCGATGA
GTCCGTTTCCGCTGCCGTTGCTCCGGCGCAAAACGCTGCCGCCAGCAGCA
GCAACAACGAAGGTATCGCCGGTGACGACGACGAGGAGGCCGACGATGAT
GATGACGATGACGACGATGACATTATCGGCGATGACATCATCGAGGCCCG
CCGTGAAGCACGTGACCTGAAGAACAACGTCATCGATATGTCCACGGATG
CTTTCCAGGCCCGCCACAACCACTTCATCGATGCCATCTTCTCGAGGATC
AATCGCATTGTTTCGGAAAACTATGATCCCTATGTGGTCAATCTAACGGG
TCGCTCCGTTTTGCCAAATGCCGCCAGTGGGTCAAATGTGAAGGCCGCTA
ACAAGAAGCAATCGACGAGCAGCAAGGTCGGAGGTCACAAGAAGCTGAAG
AACACGCGCTCGGAGCCCCGTTCCGTCAATTCGAACCAGGAGGCACGGGA
GGCTGCGGTGAAGCTGCAGGAGCAATTGACGCAATTACAGTCCGAGCTGG
CCATCAAAGCCGTGGAGAAGAGGCCCAGCCCCACATCGCCTGCCACCGAG
TCCGAGTCCGATTCCGGATCACCGAAGGCGGAAACGCGCACCGTTTCGGG
CTCAAAAACGGGCCAAAAGAAGTCCTCGAACAAGCAGAACACGAAAAAGG
CGTCGGGCCTGAAATCAGGAAACTACAATCAGCCAGCGGGGGCCAGCAAG
GCGGGAGCCTCCAGCGCTGGTGCAGTGGAAAAGCTGCAAAAGGCCGAGGG
CAGGCTCTCCGGACTGGCATCCTTGAAGCGCGTGGGAAATGTCAAGGTGA
TCAGCGATGCCGAGGGACGCAACTCGACGATCAAGGCCAAGTTCACGCTG
GGTCCCTTGGTTCTGCGGGTGGAGAAGTCCTTTAAGAAGGGCAGCGTGAG
GAGCGTGAAGAGTGCGACCGCCAGGACGAACGAGATGATGGGTCGCATCA
AGTTCAGCGTGCTCGATGATCGGGCCACCCTGATGTCCATCAAGGTGCAG
CAGCCCAAGCAGGTGGAGGTGGAGAGCAAGGACAATCACGACCGCACCCG
CGAATTTGTGTGGCGACGCACGCCCAAAATTGCCAAATTGGTCAACGAGA
AACTGAAATTGGCAGCCGAATCCTTGTTTGCCCCACAGGGCGTCGAGGTT
GTCAGGCTCGCAAGCTTTCTAGACCAT

BO10494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
ect-RB 1746 CG6611-PB 1..1743 17..1759 8715 100 Plus
ect-RA 1746 CG6611-PA 1..1743 17..1759 8715 100 Plus
ect-RF 1770 CG6611-PF 1..1767 17..1759 8375 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
ect-RB 2046 CG6611-RB 132..1876 15..1759 8725 100 Plus
ect-RA 2103 CG6611-RA 189..1933 15..1759 8725 100 Plus
ect-RF 2070 CG6611-RF 132..1900 15..1759 8385 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10190659..10191277 1615..997 3095 100 Minus
3L 28110227 3L 10195441..10195710 664..395 1350 100 Minus
3L 28110227 3L 10191572..10191807 997..762 1180 100 Minus
3L 28110227 3L 10196208..10196435 242..15 1140 100 Minus
3L 28110227 3L 10195819..10195972 395..242 770 100 Minus
3L 28110227 3L 10190446..10190595 1759..1610 750 100 Minus
3L 28110227 3L 10194893..10194997 765..661 525 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:35:15 has no hits.

BO10494.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:34 Download gff for BO10494.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RB 1..1746 17..1762 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:59 Download gff for BO10494.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RB 129..1884 2..1759 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:12 Download gff for BO10494.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RA 191..1933 17..1761 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:34 Download gff for BO10494.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RB 129..1884 2..1759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:05 Download gff for BO10494.complete
Subject Subject Range Query Range Percent Splice Strand
ect-RA 191..1933 17..1761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:05 Download gff for BO10494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10196208..10196433 17..242 100   Minus
3L 10190443..10190592 1613..1761 98 <- Minus
3L 10190662..10191277 997..1612 100 <- Minus
3L 10191573..10191807 762..996 100 <- Minus
3L 10194897..10194995 663..761 100 <- Minus
3L 10195443..10195709 396..662 100 <- Minus
3L 10195819..10195971 243..395 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:12 Download gff for BO10494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10188919..10189071 243..395 100 <- Minus
arm_3L 10188543..10188809 396..662 100 <- Minus
arm_3L 10183543..10183692 1613..1761 98 <- Minus
arm_3L 10183762..10184377 997..1612 100 <- Minus
arm_3L 10184673..10184907 762..996 100 <- Minus
arm_3L 10187997..10188095 663..761 100 <- Minus
arm_3L 10189308..10189533 17..242 100   Minus

BO10494.pep Sequence

Translation from 16 to 1777

> BO10494.pep
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQTVNNEVAPAVAPAS
DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDETPAATAQQSAVAAA
PAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAEVLAAGNAADESVSAA
VAPAQNAAASSSNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARD
LKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSENYDPYVVNLTGRSVLP
NAASGSNVKAANKKQSTSSKVGGHKKLKNTRSEPRSVNSNQEAREAAVKL
QEQLTQLQSELAIKAVEKRPSPTSPATESESDSGSPKAETRTVSGSKTGQ
KKSSNKQNTKKASGLKSGNYNQPAGASKAGASSAGAVEKLQKAEGRLSGL
ASLKRVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVRSVKSA
TARTNEMMGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTREFVWR
RTPKIAKLVNEKLKLAAESLFAPQGVEVVRLASFLDH

BO10494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
ect-PB 581 CG6611-PB 1..581 1..581 2891 100 Plus
ect-PA 581 CG6611-PA 1..581 1..581 2891 100 Plus
ect-PF 589 CG6611-PF 1..589 1..581 2872 98.6 Plus
ect-PE 548 CG6611-PE 1..548 1..581 2674 94.3 Plus
ect-PD 280 CG6611-PD 1..253 1..253 1263 98.8 Plus