Clone Sequence Records
BO10494.3prime Sequence
823 bp (822 high quality bases) assembled on 2006-04-19
> BO10494.3prime
ATGGTCTAGAAAGCTTGCGAGCCTGACAACCTCGACGCCCTGTGGGGCAA
ACAAGGATTCGGCTGCCAATTTCAGTTTCTCGTTGACCAATTTGGCAATT
TTGGGCGTGCGTCGCCACACAAATTCGCGGGTGCGGTCGTGATTGTCCTT
GCTCTCCACCTCCACCTGCTTGGGCTGCTGCACCTTGATGGACATCAGGG
TGGCCCGATCATCGAGCACGCTGAACTTGATGCGACCCATCATCTCGTTC
GTCCTGGCGGTCGCACTCTTCACGCTCCTCACGCTGCCCTTCTTAAAGGA
CTTCTCCACCCGCAGAACCAAGGGACCCAGCGTGAACTTGGCCTTGATCG
TCGAGTTGCGTCCCTCGGCATCGCTGATCACCTTGACATTTCCCACGCGC
TTCAAGGATGCCAGTCCGGAGAGCCTGCCCTCGGCCTTTTGCAGCTTTTC
CACTGCACCAGCGCTGGAGGCTCCCGCCTTGCTGGCCCCCGCTGGCTGAT
TGTAGTTTCCTGATTTCAGGCCCGACGCCTTTTTCGTGTTCTGCTTGTTC
GAGGACTTCTTTTGGCCCGTTTTTGAGCCCGAAACGGTGCGCGTTTCCGC
CTTCGGTGATCCGGAATCGGACTCGGACTCGGTGGCAGGCGATGTGGGGC
TGGGCCTCTTCTCCACGGCTTTGATGGCCAGCTCGGACTGTAATTGCGTC
AATTGCTCCTGCAGCTTCACCGCAGCCTCCCGTGCCTCCTGGTTCGAATT
GACGGAACGGGGCTCCGAGCGCGTGTTCTTCAGCTTCTTGTGACCTCCGA
CCTTGCTGCTCGTCGATTGCTTC
BO10494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6611-PA | 1746 | ect-RA | 939..1743 | 823..19 | 4025 | 100 | Minus |
CG6611-PB | 1746 | ect-RB | 939..1743 | 823..19 | 4025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ect-RF | 2070 | CG6611-RF | 1096..1900 | 823..19 | 4025 | 100 | Minus |
ect-RE | 1947 | CG6611-RE | 973..1777 | 823..19 | 4025 | 100 | Minus |
ect-RB | 2046 | CG6611-RB | 1072..1876 | 823..19 | 4025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10190659..10191277 | 163..781 | 3095 | 100 | Plus |
3L | 28110227 | 3L | 10190446..10190595 | 19..168 | 750 | 100 | Plus |
3L | 28110227 | 3L | 10191572..10191614 | 781..823 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:51:03 has no hits.
BO10494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:41:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:19 Download gff for
BO10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6611-PB | 939..1746 | 16..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:45:08 Download gff for
BO10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ect-RB | 1072..1876 | 19..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:02 Download gff for
BO10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ect-RB | 1072..1876 | 19..823 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:02 Download gff for
BO10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10190446..10190592 | 19..165 | 100 | <- | Plus |
3L | 10190662..10191277 | 166..781 | 100 | <- | Plus |
3L | 10191573..10191614 | 782..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:45:08 Download gff for
BO10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10183546..10183692 | 19..165 | 100 | <- | Plus |
arm_3L | 10183762..10184377 | 166..781 | 100 | <- | Plus |
arm_3L | 10184673..10184714 | 782..823 | 100 | | Plus |
BO10494.5prime Sequence
919 bp (768 high quality bases) assembled on 2006-04-19
> BO10494.5prime
GAAGTTATCAGTCGACATGAAGTTCGTGATTTTGCTGTGCGTGCTGAGCG
CGTTGCTGCTGCAAATTGAAGCGTCGCCCCTCCAGCGGCTTTCGAGAAGC
GAGCGGGCTGTTTCCCGCCAACAGACGGTCAACAATGAGGTGGCTCCGGC
GGTAGCTCCTGCCAGCGATGATGACGATGATGACGACGATGAGGACGACG
ATGATGAGCCTGATCTAGGAGATCTGATCGATGACGATGATGATGATGAT
GAGGAGGAGGACGATGACGAGGACGAGGAGGATGATACGCCCCAGGGTCA
GGCTGCTCCAGCGGCCACTGCCAGCGATGATGACGAAGAGGAAGACGATG
ATGATGACGATTATCTGGACAGGCTGTTCGATGATATCCTGGGCGATGAT
GAAGATGAGGATGATGATGACGAGACACCCGCTGCCACCGCCCAGCAGAG
CGCTGTGGCCGCCGCTCCCGCCCAAACTCTGGATGAGGTCGCCCCCGCTG
CCGCCTCCTCCGTGAGCGCCGGTATCTCCGATGGTGTTGATCTGCCCGCC
GAGTCCGGAAATGCCGCTGAGGTCCTGGCCGCTGGAAATGCTGCCGATGA
GTCCGTTTCCGCTGCCGTTGCTCCGGCGCAAAACGCTGCCGCCAGCAGCA
GCAACAACGAAGGTATCGCCGGTGACGACGACGAGGAGGCCGACGATGAT
GATGACGATGACGACGATGACATTATCGGCGATGACATCATCGAGGCCCG
CCGTGAAGCACGTGACCTGAAGAACAACGTCATCGATATGTCCACGGATG
CTTTCCAGGCCCGCCACAACCACTTCATCGATGCCATCTTCTCGAGGATC
AATCGCATTGTTTCGGAAAACTATGATCCCTATGTGGTCAATCTAACGGG
TCGCTCCGTTTTGCCCAAT
BO10494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6611-PA | 1746 | ect-RA | 1..899 | 17..915 | 4495 | 100 | Plus |
CG6611-PB | 1746 | ect-RB | 1..899 | 17..915 | 4495 | 100 | Plus |
CG6611-PC | 852 | ect-RC | 1..745 | 17..761 | 3725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ect-RB | 2046 | CG6611-RB | 132..1036 | 15..919 | 4510 | 99.9 | Plus |
ect-RA | 2103 | CG6611-RA | 189..1093 | 15..919 | 4510 | 99.9 | Plus |
ect-RF | 2070 | CG6611-RF | 132..1060 | 15..919 | 4260 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10195441..10195710 | 664..395 | 1350 | 100 | Minus |
3L | 28110227 | 3L | 10196208..10196435 | 242..15 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 10191650..10191807 | 919..762 | 775 | 99.4 | Minus |
3L | 28110227 | 3L | 10195819..10195972 | 395..242 | 770 | 100 | Minus |
3L | 28110227 | 3L | 10194893..10194997 | 765..661 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:07:31 has no hits.
BO10494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:41:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:20 Download gff for
BO10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6611-PB | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:48 Download gff for
BO10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ect-RA | 179..1093 | 3..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:05 Download gff for
BO10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ect-RA | 179..1093 | 3..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:05 Download gff for
BO10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10191650..10191807 | 762..919 | 99 | <- | Minus |
3L | 10194897..10194995 | 663..761 | 100 | <- | Minus |
3L | 10195819..10195971 | 243..395 | 100 | <- | Minus |
3L | 10195443..10195709 | 396..662 | 100 | <- | Minus |
3L | 10196208..10196445 | 3..242 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:48 Download gff for
BO10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10184750..10184907 | 762..919 | 99 | <- | Minus |
arm_3L | 10187997..10188095 | 663..761 | 100 | <- | Minus |
arm_3L | 10188543..10188809 | 396..662 | 100 | <- | Minus |
arm_3L | 10188919..10189071 | 243..395 | 100 | <- | Minus |
arm_3L | 10189308..10189545 | 3..242 | 97 | | Minus |
BO10494.complete Sequence
1777 bp (1777 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631794
> BO10494.complete
GAAGTTATCAGTCGACATGAAGTTCGTGATTTTGCTGTGCGTGCTGAGCG
CGTTGCTGCTGCAAATTGAAGCGTCGCCCCTCCAGCGGCTTTCGAGAAGC
GAGCGGGCTGTTTCCCGCCAACAGACGGTCAACAATGAGGTGGCTCCGGC
GGTAGCTCCTGCCAGCGATGATGACGATGATGACGACGATGAGGACGACG
ATGATGAGCCTGATCTAGGAGATCTGATCGATGACGATGATGATGATGAT
GAGGAGGAGGACGATGACGAGGACGAGGAGGATGATACGCCCCAGGGTCA
GGCTGCTCCAGCGGCCACTGCCAGCGATGATGACGAAGAGGAAGACGATG
ATGATGACGATTATCTGGACAGGCTGTTCGATGATATCCTGGGCGATGAT
GAAGATGAGGATGATGATGACGAGACACCCGCTGCCACCGCCCAGCAGAG
CGCTGTGGCCGCCGCTCCCGCCCAAACTCTGGATGAGGTCGCCCCCGCTG
CCGCCTCCTCCGTGAGCGCCGGTATCTCCGATGGTGTTGATCTGCCCGCC
GAGTCCGGAAATGCCGCTGAGGTCCTGGCCGCTGGAAATGCTGCCGATGA
GTCCGTTTCCGCTGCCGTTGCTCCGGCGCAAAACGCTGCCGCCAGCAGCA
GCAACAACGAAGGTATCGCCGGTGACGACGACGAGGAGGCCGACGATGAT
GATGACGATGACGACGATGACATTATCGGCGATGACATCATCGAGGCCCG
CCGTGAAGCACGTGACCTGAAGAACAACGTCATCGATATGTCCACGGATG
CTTTCCAGGCCCGCCACAACCACTTCATCGATGCCATCTTCTCGAGGATC
AATCGCATTGTTTCGGAAAACTATGATCCCTATGTGGTCAATCTAACGGG
TCGCTCCGTTTTGCCAAATGCCGCCAGTGGGTCAAATGTGAAGGCCGCTA
ACAAGAAGCAATCGACGAGCAGCAAGGTCGGAGGTCACAAGAAGCTGAAG
AACACGCGCTCGGAGCCCCGTTCCGTCAATTCGAACCAGGAGGCACGGGA
GGCTGCGGTGAAGCTGCAGGAGCAATTGACGCAATTACAGTCCGAGCTGG
CCATCAAAGCCGTGGAGAAGAGGCCCAGCCCCACATCGCCTGCCACCGAG
TCCGAGTCCGATTCCGGATCACCGAAGGCGGAAACGCGCACCGTTTCGGG
CTCAAAAACGGGCCAAAAGAAGTCCTCGAACAAGCAGAACACGAAAAAGG
CGTCGGGCCTGAAATCAGGAAACTACAATCAGCCAGCGGGGGCCAGCAAG
GCGGGAGCCTCCAGCGCTGGTGCAGTGGAAAAGCTGCAAAAGGCCGAGGG
CAGGCTCTCCGGACTGGCATCCTTGAAGCGCGTGGGAAATGTCAAGGTGA
TCAGCGATGCCGAGGGACGCAACTCGACGATCAAGGCCAAGTTCACGCTG
GGTCCCTTGGTTCTGCGGGTGGAGAAGTCCTTTAAGAAGGGCAGCGTGAG
GAGCGTGAAGAGTGCGACCGCCAGGACGAACGAGATGATGGGTCGCATCA
AGTTCAGCGTGCTCGATGATCGGGCCACCCTGATGTCCATCAAGGTGCAG
CAGCCCAAGCAGGTGGAGGTGGAGAGCAAGGACAATCACGACCGCACCCG
CGAATTTGTGTGGCGACGCACGCCCAAAATTGCCAAATTGGTCAACGAGA
AACTGAAATTGGCAGCCGAATCCTTGTTTGCCCCACAGGGCGTCGAGGTT
GTCAGGCTCGCAAGCTTTCTAGACCAT
BO10494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ect-RB | 1746 | CG6611-PB | 1..1743 | 17..1759 | 8715 | 100 | Plus |
ect-RA | 1746 | CG6611-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
ect-RF | 1770 | CG6611-PF | 1..1767 | 17..1759 | 8375 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ect-RB | 2046 | CG6611-RB | 132..1876 | 15..1759 | 8725 | 100 | Plus |
ect-RA | 2103 | CG6611-RA | 189..1933 | 15..1759 | 8725 | 100 | Plus |
ect-RF | 2070 | CG6611-RF | 132..1900 | 15..1759 | 8385 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10190659..10191277 | 1615..997 | 3095 | 100 | Minus |
3L | 28110227 | 3L | 10195441..10195710 | 664..395 | 1350 | 100 | Minus |
3L | 28110227 | 3L | 10191572..10191807 | 997..762 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 10196208..10196435 | 242..15 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 10195819..10195972 | 395..242 | 770 | 100 | Minus |
3L | 28110227 | 3L | 10190446..10190595 | 1759..1610 | 750 | 100 | Minus |
3L | 28110227 | 3L | 10194893..10194997 | 765..661 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:35:15 has no hits.
BO10494.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:34 Download gff for
BO10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ect-RB | 1..1746 | 17..1762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:59 Download gff for
BO10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ect-RB | 129..1884 | 2..1759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:12 Download gff for
BO10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ect-RA | 191..1933 | 17..1761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:34 Download gff for
BO10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ect-RB | 129..1884 | 2..1759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:05 Download gff for
BO10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ect-RA | 191..1933 | 17..1761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:05 Download gff for
BO10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10196208..10196433 | 17..242 | 100 | | Minus |
3L | 10190443..10190592 | 1613..1761 | 98 | <- | Minus |
3L | 10190662..10191277 | 997..1612 | 100 | <- | Minus |
3L | 10191573..10191807 | 762..996 | 100 | <- | Minus |
3L | 10194897..10194995 | 663..761 | 100 | <- | Minus |
3L | 10195443..10195709 | 396..662 | 100 | <- | Minus |
3L | 10195819..10195971 | 243..395 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:12 Download gff for
BO10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10188919..10189071 | 243..395 | 100 | <- | Minus |
arm_3L | 10188543..10188809 | 396..662 | 100 | <- | Minus |
arm_3L | 10183543..10183692 | 1613..1761 | 98 | <- | Minus |
arm_3L | 10183762..10184377 | 997..1612 | 100 | <- | Minus |
arm_3L | 10184673..10184907 | 762..996 | 100 | <- | Minus |
arm_3L | 10187997..10188095 | 663..761 | 100 | <- | Minus |
arm_3L | 10189308..10189533 | 17..242 | 100 | | Minus |
BO10494.pep Sequence
Translation from 16 to 1777
> BO10494.pep
MKFVILLCVLSALLLQIEASPLQRLSRSERAVSRQQTVNNEVAPAVAPAS
DDDDDDDDEDDDDEPDLGDLIDDDDDDDEEEDDDEDEEDDTPQGQAAPAA
TASDDDEEEDDDDDDYLDRLFDDILGDDEDEDDDDETPAATAQQSAVAAA
PAQTLDEVAPAAASSVSAGISDGVDLPAESGNAAEVLAAGNAADESVSAA
VAPAQNAAASSSNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARD
LKNNVIDMSTDAFQARHNHFIDAIFSRINRIVSENYDPYVVNLTGRSVLP
NAASGSNVKAANKKQSTSSKVGGHKKLKNTRSEPRSVNSNQEAREAAVKL
QEQLTQLQSELAIKAVEKRPSPTSPATESESDSGSPKAETRTVSGSKTGQ
KKSSNKQNTKKASGLKSGNYNQPAGASKAGASSAGAVEKLQKAEGRLSGL
ASLKRVGNVKVISDAEGRNSTIKAKFTLGPLVLRVEKSFKKGSVRSVKSA
TARTNEMMGRIKFSVLDDRATLMSIKVQQPKQVEVESKDNHDRTREFVWR
RTPKIAKLVNEKLKLAAESLFAPQGVEVVRLASFLDH
BO10494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ect-PB | 581 | CG6611-PB | 1..581 | 1..581 | 2891 | 100 | Plus |
ect-PA | 581 | CG6611-PA | 1..581 | 1..581 | 2891 | 100 | Plus |
ect-PF | 589 | CG6611-PF | 1..589 | 1..581 | 2872 | 98.6 | Plus |
ect-PE | 548 | CG6611-PE | 1..548 | 1..581 | 2674 | 94.3 | Plus |
ect-PD | 280 | CG6611-PD | 1..253 | 1..253 | 1263 | 98.8 | Plus |