Clone BO10512 Report

Search the DGRC for BO10512

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:105
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptbeat-Vb-RA
Protein status:BO10512.pep: Imported from assembly
Sequenced Size:1018

Clone Sequence Records

BO10512.3prime Sequence

516 bp (149 high quality bases) assembled on 2006-04-19

> BO10512.3prime
ATGGTCTAGAAAGCTTGCCGTCGCCGCCATTTTATAGCGCGCCGACTTCC
GTGCGCCATATTGAAATGTCAGCGGTGTGAAGAGTCGCACTGCGGTCATC
GTCATCGAAATAGCCACCAGCAGCAGATGCTGCACTTGTGAATTTGGAGT
GGCACCCGATCTCGAGTTGATCAGCTTCTGATTTTTCTGATCGATATCGT
CCCTGAAGAGCTGGGGCGAACATAGTGCCTTCTCTTTGCAGATGAGGATA
CCGATCGATCTCCGCAACACAACGCAGCTCGAGCCCAAGTCTTGCTGGTG
AAATTGTCCGCTTTTGCTGGATCAGTTTTTGCAATTGCAATTGATGGAAA
CGTGGTTCATTGGCGTAGAAATTGAGCTGGGAAACAATGCGTCGCATGCT
GTATCCATGGGCTACTATGGTGGTCTCAAAAGAGGGTAGTAGATCCACCA
GAGAAACCTTTATCCCATTGACGTACCCAGGTATCCCGTGTGAAAAGGCT
GGAGAAATCTGTACTA

BO10512.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31298-PA 987 beat-Vb-RA 527..790 477..214 1320 100 Minus
CG31298-PA 987 beat-Vb-RA 788..984 215..19 985 100 Minus
CG31298-PA 987 beat-Vb-RA 489..519 516..486 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-RB 1631 CG31298-RB 854..1349 516..19 2410 99.2 Minus
beat-Vb-RA 1826 CG31298-RA 1049..1544 516..19 2410 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12933532..12933836 459..154 1480 99.7 Minus
3R 32079331 3R 12934394..12934531 156..19 690 100 Minus
3R 32079331 3R 12933417..12933476 516..456 225 95.1 Minus
Blast to na_te.dros performed on 2015-02-12 01:21:40 has no hits.

BO10512.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:03 Download gff for BO10512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31298-PA 490..987 15..515 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:46 Download gff for BO10512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31298-PA 490..987 15..515 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:45:46 Download gff for BO10512.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 1050..1547 15..515 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:39 Download gff for BO10512.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 1050..1547 15..515 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:39 Download gff for BO10512.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12933418..12933474 458..515 94 -> Minus
3R 12933534..12933834 156..457 99 -> Minus
3R 12934395..12934534 15..155 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:45:46 Download gff for BO10512.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8759140..8759196 458..515 94 -> Minus
arm_3R 8759256..8759556 156..457 99 -> Minus
arm_3R 8760117..8760256 15..155 98   Minus

BO10512.5prime Sequence

477 bp (330 high quality bases) assembled on 2006-04-19

> BO10512.5prime
GAAGTTATCAGTCGACATGGACCTGGGCCGCTGGCTGCTGCAGCTGGGCG
TGCACATGCTGCTGGTTGTGCGGCGCATTCAGTGTCTACGTGTGACTGAC
ATCAATGTGCCACAAATTGTTGATTTTCGTGATAACGTGACATTATCCTG
CAGCTATGACATAAGTGGTCACACGTTAAATTCGGTTAAGTGGTACAAAA
ACGGAAAGGAGTTTTTTAGATACTCGCCCCTCACCCCGCCCACCTACATT
CCGTTCGCCGTTGAGGGCGTGCAGCTGATCGATGACGGCAACGAGTGCAA
CGAATCCTCCTGTCGCGTGNAGCTCAATTTATTGGGCGTCAAGTCGTCGG
GCGTCTACAGGTGCGAAGTGTCCGGTGACGCTCCCCACTTCCAGCTAACT
GCACGCGATGCCAACATGACCGTCGAAGCACTTCCCCAAAACAATCCACT
CATCAGCAGCTTTCACTCAACTTATCG

BO10512.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31298-PA 987 beat-Vb-RA 1..461 17..477 2286 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-RB 1631 CG31298-RB 366..826 17..477 2294 99.8 Plus
beat-Vb-RA 1826 CG31298-RA 561..1021 17..477 2294 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12931574..12931784 218..428 1044 99.5 Plus
3R 32079331 3R 12928864..12929018 65..219 775 100 Plus
3R 32079331 3R 12933339..12933389 427..477 255 100 Plus
3R 32079331 3R 12918721..12918769 17..65 245 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:37:46 has no hits.

BO10512.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:04 Download gff for BO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31298-PA 1..461 17..477 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:47 Download gff for BO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31298-PA 1..461 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:45:10 Download gff for BO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1021 17..477 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:51 Download gff for BO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1021 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:51 Download gff for BO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12918721..12918769 17..65 100 -> Plus
3R 12928865..12929018 66..219 100 -> Plus
3R 12931576..12931784 220..428 99 -> Plus
3R 12933341..12933389 429..477 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:45:10 Download gff for BO10512.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8759063..8759111 429..477 100   Plus
arm_3R 8744443..8744491 17..65 100 -> Plus
arm_3R 8754587..8754740 66..219 100 -> Plus
arm_3R 8757298..8757506 220..428 99 -> Plus

BO10512.complete Sequence

1018 bp assembled on 2008-08-15

GenBank Submission: FJ631795

> BO10512.complete
GAAGTTATCAGTCGACATGGACCTGGGCCGCTGGCTGCTGCAGCTGGGCG
TGCACATGCTGCTGGTTGTGCGGCGCATTCAGTGTCTACGTGTGACTGAC
ATCAATGTGCCACAAATTGTTGATTTTCGTGATAACGTGACATTATCCTG
CAGCTATGACATAAGTGGTCACACGTTAAATTCGGTTAAGTGGTACAAAA
ACGGAAAGGAGTTTTTTAGATACTCGCCCCTCACCCCGCCCACCTACATT
CCGTTCGCCGTTGAGGGCGTGCAGCTGATCGATGACGGCAACGAGTGCAA
CGAATCCTCCTGTCGCGTGGAGCTCAATTTATTGGGCGTCAAGTCGTCGG
GCGTCTACAGGTGCGAAGTGTCCGGTGACGCTCCCCACTTCCAGCTAACT
GCACGCGATGCCAACATGACCGTCGAAGCACTTCCCCAAAACAATCCACT
CATCAGCAGCTTTCACTCAACTTATCGCTTTAATGACTTCGTAGAGGTCA
ACTGTAGTACAGATTTCTCCAGCCTTTTCACACGGATTACCTGGTACGTC
AATGGGATAAAGGTTTCTCTGGTGGATCTACTACCCTCTTTTGAGACCAC
CATAGTAGCCCATGGATACAGCATGCGACGCATTGTTTCCCAGCTCAATT
TCTACGCCAATGAACCACGTTTCCATCAATTGCAATTGCAAAAACTGATC
CAGCAAAAGCGGACAATTTCACCAGCAAGACTTGGGCTCGAGCTGCGTTG
TGTTGCGGAGATCGATCGGTATCCTCATCTGCAAAGAGAAGGCACTATGT
TCGCCCAGCTCTTCAGGGACGATATCGATCAGAAAAATCAGAAGCTGATC
AACTCGAGATCGGGTGCCACTCCAAATTCACAAGTGCAGCATCTGCTGCT
GGTGGCTATTTCGATGACGATGACCGCAGTGCGACTCTTCACACCGCTGA
CATTTCAATATGGCGCACGGAAGTCGGCGCGCTATAAAATGGCGGCGACG
GCAAGCTTTCTAGACCAT

BO10512.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-RB 987 CG31298-PB 1..984 17..1000 4920 100 Plus
beat-Vb-RA 987 CG31298-PA 1..984 17..1000 4920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-RB 1631 CG31298-RB 366..1349 17..1000 4920 100 Plus
beat-Vb-RA 1826 CG31298-RA 561..1544 17..1000 4920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12933532..12933836 561..865 1525 100 Plus
3R 32079331 3R 12931574..12931784 218..428 1055 100 Plus
3R 32079331 3R 12928864..12929018 65..219 775 100 Plus
3R 32079331 3R 12933339..12933476 427..564 690 100 Plus
3R 32079331 3R 12934394..12934531 863..1000 690 100 Plus
3R 32079331 3R 12918721..12918769 17..65 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:49:50 has no hits.

BO10512.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:47 Download gff for BO10512.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1547 17..1004 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:14 Download gff for BO10512.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1544 17..1002 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:43 Download gff for BO10512.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1544 17..1002 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:14 Download gff for BO10512.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1544 17..1002 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:14 Download gff for BO10512.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12931576..12931784 220..428 100 -> Plus
3R 12933341..12933474 429..562 100 -> Plus
3R 12933534..12933834 563..863 100 -> Plus
3R 12918721..12918769 17..65 100 -> Plus
3R 12928865..12929018 66..219 100 -> Plus
3R 12934395..12934531 864..1002 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:14 Download gff for BO10512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8757298..8757506 220..428 100 -> Plus
arm_3R 8759063..8759196 429..562 100 -> Plus
arm_3R 8759256..8759556 563..863 100 -> Plus
arm_3R 8760117..8760253 864..1002 98   Plus
arm_3R 8744443..8744491 17..65 100 -> Plus
arm_3R 8754587..8754740 66..219 100 -> Plus

BO10512.pep Sequence

Translation from 16 to 1018

> BO10512.pep
MDLGRWLLQLGVHMLLVVRRIQCLRVTDINVPQIVDFRDNVTLSCSYDIS
GHTLNSVKWYKNGKEFFRYSPLTPPTYIPFAVEGVQLIDDGNECNESSCR
VELNLLGVKSSGVYRCEVSGDAPHFQLTARDANMTVEALPQNNPLISSFH
STYRFNDFVEVNCSTDFSSLFTRITWYVNGIKVSLVDLLPSFETTIVAHG
YSMRRIVSQLNFYANEPRFHQLQLQKLIQQKRTISPARLGLELRCVAEID
RYPHLQREGTMFAQLFRDDIDQKNQKLINSRSGATPNSQVQHLLLVAISM
TMTAVRLFTPLTFQYGARKSARYKMAATASFLDH

BO10512.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-PB 328 CG31298-PB 1..328 1..328 1706 100 Plus
beat-Vb-PA 328 CG31298-PA 1..328 1..328 1706 100 Plus
beat-Va-PC 300 CG10134-PC 1..274 1..288 711 50.7 Plus
beat-Va-PA 300 CG10134-PA 1..274 1..288 711 50.7 Plus
beat-Va-PB 300 CG10134-PB 1..274 1..288 711 50.7 Plus