Clone Sequence Records
BO10512.3prime Sequence
516 bp (149 high quality bases) assembled on 2006-04-19
> BO10512.3prime
ATGGTCTAGAAAGCTTGCCGTCGCCGCCATTTTATAGCGCGCCGACTTCC
GTGCGCCATATTGAAATGTCAGCGGTGTGAAGAGTCGCACTGCGGTCATC
GTCATCGAAATAGCCACCAGCAGCAGATGCTGCACTTGTGAATTTGGAGT
GGCACCCGATCTCGAGTTGATCAGCTTCTGATTTTTCTGATCGATATCGT
CCCTGAAGAGCTGGGGCGAACATAGTGCCTTCTCTTTGCAGATGAGGATA
CCGATCGATCTCCGCAACACAACGCAGCTCGAGCCCAAGTCTTGCTGGTG
AAATTGTCCGCTTTTGCTGGATCAGTTTTTGCAATTGCAATTGATGGAAA
CGTGGTTCATTGGCGTAGAAATTGAGCTGGGAAACAATGCGTCGCATGCT
GTATCCATGGGCTACTATGGTGGTCTCAAAAGAGGGTAGTAGATCCACCA
GAGAAACCTTTATCCCATTGACGTACCCAGGTATCCCGTGTGAAAAGGCT
GGAGAAATCTGTACTA
BO10512.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31298-PA | 987 | beat-Vb-RA | 527..790 | 477..214 | 1320 | 100 | Minus |
CG31298-PA | 987 | beat-Vb-RA | 788..984 | 215..19 | 985 | 100 | Minus |
CG31298-PA | 987 | beat-Vb-RA | 489..519 | 516..486 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-RB | 1631 | CG31298-RB | 854..1349 | 516..19 | 2410 | 99.2 | Minus |
beat-Vb-RA | 1826 | CG31298-RA | 1049..1544 | 516..19 | 2410 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12933532..12933836 | 459..154 | 1480 | 99.7 | Minus |
3R | 32079331 | 3R | 12934394..12934531 | 156..19 | 690 | 100 | Minus |
3R | 32079331 | 3R | 12933417..12933476 | 516..456 | 225 | 95.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:21:40 has no hits.
BO10512.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:03 Download gff for
BO10512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31298-PA | 490..987 | 15..515 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:46 Download gff for
BO10512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31298-PA | 490..987 | 15..515 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:45:46 Download gff for
BO10512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 1050..1547 | 15..515 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:39 Download gff for
BO10512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 1050..1547 | 15..515 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:39 Download gff for
BO10512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12933418..12933474 | 458..515 | 94 | -> | Minus |
3R | 12933534..12933834 | 156..457 | 99 | -> | Minus |
3R | 12934395..12934534 | 15..155 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:45:46 Download gff for
BO10512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8759140..8759196 | 458..515 | 94 | -> | Minus |
arm_3R | 8759256..8759556 | 156..457 | 99 | -> | Minus |
arm_3R | 8760117..8760256 | 15..155 | 98 | | Minus |
BO10512.5prime Sequence
477 bp (330 high quality bases) assembled on 2006-04-19
> BO10512.5prime
GAAGTTATCAGTCGACATGGACCTGGGCCGCTGGCTGCTGCAGCTGGGCG
TGCACATGCTGCTGGTTGTGCGGCGCATTCAGTGTCTACGTGTGACTGAC
ATCAATGTGCCACAAATTGTTGATTTTCGTGATAACGTGACATTATCCTG
CAGCTATGACATAAGTGGTCACACGTTAAATTCGGTTAAGTGGTACAAAA
ACGGAAAGGAGTTTTTTAGATACTCGCCCCTCACCCCGCCCACCTACATT
CCGTTCGCCGTTGAGGGCGTGCAGCTGATCGATGACGGCAACGAGTGCAA
CGAATCCTCCTGTCGCGTGNAGCTCAATTTATTGGGCGTCAAGTCGTCGG
GCGTCTACAGGTGCGAAGTGTCCGGTGACGCTCCCCACTTCCAGCTAACT
GCACGCGATGCCAACATGACCGTCGAAGCACTTCCCCAAAACAATCCACT
CATCAGCAGCTTTCACTCAACTTATCG
BO10512.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31298-PA | 987 | beat-Vb-RA | 1..461 | 17..477 | 2286 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-RB | 1631 | CG31298-RB | 366..826 | 17..477 | 2294 | 99.8 | Plus |
beat-Vb-RA | 1826 | CG31298-RA | 561..1021 | 17..477 | 2294 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12931574..12931784 | 218..428 | 1044 | 99.5 | Plus |
3R | 32079331 | 3R | 12928864..12929018 | 65..219 | 775 | 100 | Plus |
3R | 32079331 | 3R | 12933339..12933389 | 427..477 | 255 | 100 | Plus |
3R | 32079331 | 3R | 12918721..12918769 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:37:46 has no hits.
BO10512.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:04 Download gff for
BO10512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31298-PA | 1..461 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:47 Download gff for
BO10512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31298-PA | 1..461 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:45:10 Download gff for
BO10512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1021 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:51 Download gff for
BO10512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1021 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:51 Download gff for
BO10512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12918721..12918769 | 17..65 | 100 | -> | Plus |
3R | 12928865..12929018 | 66..219 | 100 | -> | Plus |
3R | 12931576..12931784 | 220..428 | 99 | -> | Plus |
3R | 12933341..12933389 | 429..477 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:45:10 Download gff for
BO10512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8759063..8759111 | 429..477 | 100 | | Plus |
arm_3R | 8744443..8744491 | 17..65 | 100 | -> | Plus |
arm_3R | 8754587..8754740 | 66..219 | 100 | -> | Plus |
arm_3R | 8757298..8757506 | 220..428 | 99 | -> | Plus |
BO10512.complete Sequence
1018 bp assembled on 2008-08-15
GenBank Submission: FJ631795
> BO10512.complete
GAAGTTATCAGTCGACATGGACCTGGGCCGCTGGCTGCTGCAGCTGGGCG
TGCACATGCTGCTGGTTGTGCGGCGCATTCAGTGTCTACGTGTGACTGAC
ATCAATGTGCCACAAATTGTTGATTTTCGTGATAACGTGACATTATCCTG
CAGCTATGACATAAGTGGTCACACGTTAAATTCGGTTAAGTGGTACAAAA
ACGGAAAGGAGTTTTTTAGATACTCGCCCCTCACCCCGCCCACCTACATT
CCGTTCGCCGTTGAGGGCGTGCAGCTGATCGATGACGGCAACGAGTGCAA
CGAATCCTCCTGTCGCGTGGAGCTCAATTTATTGGGCGTCAAGTCGTCGG
GCGTCTACAGGTGCGAAGTGTCCGGTGACGCTCCCCACTTCCAGCTAACT
GCACGCGATGCCAACATGACCGTCGAAGCACTTCCCCAAAACAATCCACT
CATCAGCAGCTTTCACTCAACTTATCGCTTTAATGACTTCGTAGAGGTCA
ACTGTAGTACAGATTTCTCCAGCCTTTTCACACGGATTACCTGGTACGTC
AATGGGATAAAGGTTTCTCTGGTGGATCTACTACCCTCTTTTGAGACCAC
CATAGTAGCCCATGGATACAGCATGCGACGCATTGTTTCCCAGCTCAATT
TCTACGCCAATGAACCACGTTTCCATCAATTGCAATTGCAAAAACTGATC
CAGCAAAAGCGGACAATTTCACCAGCAAGACTTGGGCTCGAGCTGCGTTG
TGTTGCGGAGATCGATCGGTATCCTCATCTGCAAAGAGAAGGCACTATGT
TCGCCCAGCTCTTCAGGGACGATATCGATCAGAAAAATCAGAAGCTGATC
AACTCGAGATCGGGTGCCACTCCAAATTCACAAGTGCAGCATCTGCTGCT
GGTGGCTATTTCGATGACGATGACCGCAGTGCGACTCTTCACACCGCTGA
CATTTCAATATGGCGCACGGAAGTCGGCGCGCTATAAAATGGCGGCGACG
GCAAGCTTTCTAGACCAT
BO10512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-RB | 987 | CG31298-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
beat-Vb-RA | 987 | CG31298-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-RB | 1631 | CG31298-RB | 366..1349 | 17..1000 | 4920 | 100 | Plus |
beat-Vb-RA | 1826 | CG31298-RA | 561..1544 | 17..1000 | 4920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12933532..12933836 | 561..865 | 1525 | 100 | Plus |
3R | 32079331 | 3R | 12931574..12931784 | 218..428 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 12928864..12929018 | 65..219 | 775 | 100 | Plus |
3R | 32079331 | 3R | 12933339..12933476 | 427..564 | 690 | 100 | Plus |
3R | 32079331 | 3R | 12934394..12934531 | 863..1000 | 690 | 100 | Plus |
3R | 32079331 | 3R | 12918721..12918769 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:49:50 has no hits.
BO10512.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:47 Download gff for
BO10512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1547 | 17..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:14 Download gff for
BO10512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1544 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:43 Download gff for
BO10512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1544 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:14 Download gff for
BO10512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1544 | 17..1002 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:14 Download gff for
BO10512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12931576..12931784 | 220..428 | 100 | -> | Plus |
3R | 12933341..12933474 | 429..562 | 100 | -> | Plus |
3R | 12933534..12933834 | 563..863 | 100 | -> | Plus |
3R | 12918721..12918769 | 17..65 | 100 | -> | Plus |
3R | 12928865..12929018 | 66..219 | 100 | -> | Plus |
3R | 12934395..12934531 | 864..1002 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:14 Download gff for
BO10512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8757298..8757506 | 220..428 | 100 | -> | Plus |
arm_3R | 8759063..8759196 | 429..562 | 100 | -> | Plus |
arm_3R | 8759256..8759556 | 563..863 | 100 | -> | Plus |
arm_3R | 8760117..8760253 | 864..1002 | 98 | | Plus |
arm_3R | 8744443..8744491 | 17..65 | 100 | -> | Plus |
arm_3R | 8754587..8754740 | 66..219 | 100 | -> | Plus |
BO10512.pep Sequence
Translation from 16 to 1018
> BO10512.pep
MDLGRWLLQLGVHMLLVVRRIQCLRVTDINVPQIVDFRDNVTLSCSYDIS
GHTLNSVKWYKNGKEFFRYSPLTPPTYIPFAVEGVQLIDDGNECNESSCR
VELNLLGVKSSGVYRCEVSGDAPHFQLTARDANMTVEALPQNNPLISSFH
STYRFNDFVEVNCSTDFSSLFTRITWYVNGIKVSLVDLLPSFETTIVAHG
YSMRRIVSQLNFYANEPRFHQLQLQKLIQQKRTISPARLGLELRCVAEID
RYPHLQREGTMFAQLFRDDIDQKNQKLINSRSGATPNSQVQHLLLVAISM
TMTAVRLFTPLTFQYGARKSARYKMAATASFLDH
BO10512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-PB | 328 | CG31298-PB | 1..328 | 1..328 | 1706 | 100 | Plus |
beat-Vb-PA | 328 | CG31298-PA | 1..328 | 1..328 | 1706 | 100 | Plus |
beat-Va-PC | 300 | CG10134-PC | 1..274 | 1..288 | 711 | 50.7 | Plus |
beat-Va-PA | 300 | CG10134-PA | 1..274 | 1..288 | 711 | 50.7 | Plus |
beat-Va-PB | 300 | CG10134-PB | 1..274 | 1..288 | 711 | 50.7 | Plus |