Clone Sequence Records
BO10522.5prime Sequence
429 bp (299 high quality bases) assembled on 2006-04-19
> BO10522.5prime
GAAGTTATCAGTCGACATGGCGGAACTGGTGAGGGACTGGCTGGCGGACT
ACCAGCGCATACGGGGTCAGCCCTCGGAGGCGGAAGCGTTCGTGGTGGAG
CACGAAACAGATCCCGAGATCGCCGAAGCCATATTCACCATCTTCAACGA
GCGACAGCGGAACGAAACGCTGGTTCACGACATCTGCCAGCAGCTACTGG
CCTTCTACCGCTCGCCGGAGCAGACGCTGCACAAGTTCCCGCTGCAGTTC
ATCCCAGTGCTTCTCTACACGTACCTCCACTCGGTGGCCGGCGGCGATAA
GAAGGCTGCGCGCGGCGTGGAGACGCTGCTCATCTGCATTTACAATGGCG
AGGTGTCCACCGAAGACGGCGGCCAGAAGGTGGTGGCCTTTCGCATGCCC
ATCCTGGCCCAGACGTCCGTTTACCACGA
BO10522.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6406-PB | 1635 | CG6406-RB | 1..413 | 17..429 | 2065 | 100 | Plus |
CG6406-PA | 1635 | CG6406-RA | 1..413 | 17..429 | 2065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6406-RA | 2734 | CG6406-RA | 203..615 | 17..429 | 2065 | 100 | Plus |
CG6406-RB | 2740 | CG6406-RB | 209..621 | 17..429 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17736593..17737005 | 429..17 | 2065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:41:41 has no hits.
BO10522.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:11 Download gff for
BO10522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6406-PB | 1..412 | 17..428 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:57 Download gff for
BO10522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6406-PA | 1..412 | 17..428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:59 Download gff for
BO10522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6406-RB | 204..620 | 13..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:19 Download gff for
BO10522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6406-RB | 204..620 | 13..428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:19 Download gff for
BO10522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17736594..17737010 | 13..428 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:59 Download gff for
BO10522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13624099..13624515 | 13..428 | 99 | | Minus |
BO10522.complete Sequence
1666 bp assembled on 2007-10-05
GenBank Submission: FJ631797
> BO10522.complete
GAAGTTATCAGTCGACATGGCGGAACTGGTGAGGGACTGGCTGGCGGACT
ACCAGCGCATACGGGGTCAGCCCTCGGAGGCGGAAGCGTTCGTGGTGGAG
CACGAAACAGATCCCGAGATCGCCGAAGCCATATTCACCATCTTCAACGA
GCGACAGCGGAACGAAACGCTGGTTCACGACATCTGCCAGCAGCTACTGG
CCTTCTACCGCTCGCCGGAGCAGACGCTGCACAAGTTCCCGCTGCAGTTC
ATCCCAGTGCTTCTCTACACGTACCTCCACTCGGTGGCCGGCGGCGATAA
GAAGGCTGCGCGCGGCGTGGAGACGCTGCTCATCTGCATTTACAATGGCG
AGGTGTCCACCGAAGACGGCGGCCAGAAGGTGGTGGCCTTTCGCATGCCC
ATCCTGGCCCAGACGTCCGTTTACCACGAGGTAAAGAACCTGCCCATGAC
GGATCTGCGCCGTTGGGAGGAGAACTGCAACCGGGAGGTGAAGTGGGGTC
CACACCAGCGCATCGAATCGATTCATGCCCAGAACCGAATGCGTATTCTT
ACTGCTTTGCTGTTCTGCTACAACCAGCAGGTCAGCCAAACGCAGAAGTC
TTCGCTACTGCACTTGTGCCGGGTCACATCGCAGTTGGTGAACCAAGGAT
TCACCACGAAGTCGGGTCATGGCCATCGAATGAGTTATGGATCTGATCCT
GCAACCGGAGTACCTTTTCCCAAGCCCTCTTCACCGCGCATTCCACTGTC
CGCCGCCTTCCTGATCGAGCTGGTGCACGCCATCTATTTCGCCATGTTTA
ATGGCTTCGGCACGATAGCCATTCAGACACTGGACGACATCCACAACCGG
GCCATCTACGAGATGTACTCGGAAGTGATCCTGGTGACCAGCGCAGTGCG
AAATTCGCTGCACGCCAATCCTTCCGGACAGCCCAACGACGGTCCCATGG
GCTTGAGTGTGGCCTTAACGCCGTCCACAACAACGGTGACCACATCGGTG
TCCAAGTCTATGATCACGAACGCATCCTTCCGTACGAAAAAACTGCCCGA
CGACATACCCATCCAGGTACAGGACCTCACAATACAGCAGGCTCCGCAGC
AGCTGGCCAGCGTCACTGAGGAGACGGAACCGGGCACCAAGGAATCGCCC
TCAACGAAGGAGAGTTCCGGTACGCGCACTTCCATCATGCGGCCCAGCAT
GGAGGGCATCAAGGCACAGGCACACAAGGCGCTCATTGCGGGCTTCAAGA
AATCTAAGGACAAGGAGAAAGAGAAGGACAAGGAGCCACCGAAGCCACCG
CAGCGCAAGTTCGACAAGCACACGCAGCGCAACTCACTGCTCCAGCTGCA
GGCGGAACCCAGCTCGAATTCCAGCGCGGAACAGCCACCCACCGGCGAAG
TGTTGCCCCTGCAGACGCTCTCGCTGATCAACGAGAACGGCAGCAACAGT
TTCAGCGTGGACAGCGACCTCAACGACGGCGTGCTGGGCGTAAGTGCCAA
CACATCCCTGCCCCCGCTGAGCAGCACCACCAACTCGGTGACCAGTAGCG
ACCTGATCACCAAGAGCTTCGACTCCAGCATTGAACTGGCGCCGATAGGG
CACAGCAGCAGCAATGGCGGCAAGTTGGCCGAGCACGGCTTGGCGGAGGC
AAGCTTTCTAGACCAT
BO10522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6406-RA | 1635 | CG6406-PA | 1..1632 | 17..1648 | 8160 | 100 | Plus |
CG6406-RB | 1635 | CG6406-PB | 1..1632 | 17..1648 | 8160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6406-RA | 2734 | CG6406-RA | 203..1834 | 17..1648 | 8160 | 100 | Plus |
CG6406-RB | 2740 | CG6406-RB | 209..1840 | 17..1648 | 8160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17735319..17736277 | 1648..690 | 4795 | 100 | Minus |
2R | 25286936 | 2R | 17736332..17737005 | 690..17 | 3370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:03:10 has no hits.
BO10522.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:02 Download gff for
BO10522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6406-RA | 1..1635 | 17..1649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:58 Download gff for
BO10522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6406-RA | 193..1829 | 13..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:16 Download gff for
BO10522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6406-RB | 209..1840 | 17..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:02 Download gff for
BO10522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6406-RA | 193..1829 | 13..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:38 Download gff for
BO10522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6406-RB | 209..1840 | 17..1650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:38 Download gff for
BO10522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17735317..17736276 | 691..1650 | 99 | <- | Minus |
2R | 17736332..17737005 | 17..690 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:16 Download gff for
BO10522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13622822..13623781 | 691..1650 | 99 | <- | Minus |
arm_2R | 13623837..13624510 | 17..690 | 100 | | Minus |
BO10522.pep Sequence
Translation from 16 to 1666
> BO10522.pep
MAELVRDWLADYQRIRGQPSEAEAFVVEHETDPEIAEAIFTIFNERQRNE
TLVHDICQQLLAFYRSPEQTLHKFPLQFIPVLLYTYLHSVAGGDKKAARG
VETLLICIYNGEVSTEDGGQKVVAFRMPILAQTSVYHEVKNLPMTDLRRW
EENCNREVKWGPHQRIESIHAQNRMRILTALLFCYNQQVSQTQKSSLLHL
CRVTSQLVNQGFTTKSGHGHRMSYGSDPATGVPFPKPSSPRIPLSAAFLI
ELVHAIYFAMFNGFGTIAIQTLDDIHNRAIYEMYSEVILVTSAVRNSLHA
NPSGQPNDGPMGLSVALTPSTTTVTTSVSKSMITNASFRTKKLPDDIPIQ
VQDLTIQQAPQQLASVTEETEPGTKESPSTKESSGTRTSIMRPSMEGIKA
QAHKALIAGFKKSKDKEKEKDKEPPKPPQRKFDKHTQRNSLLQLQAEPSS
NSSAEQPPTGEVLPLQTLSLINENGSNSFSVDSDLNDGVLGVSANTSLPP
LSSTTNSVTSSDLITKSFDSSIELAPIGHSSSNGGKLAEHGLAEASFLDH
BO10522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6406-PA | 544 | CG6406-PA | 1..544 | 1..544 | 2791 | 100 | Plus |
CG6406-PB | 544 | CG6406-PB | 1..544 | 1..544 | 2791 | 100 | Plus |