Clone BO10522 Report

Search the DGRC for BO10522

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:105
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG6406-RA
Protein status:BO10522.pep: validated full length
Sequenced Size:1666

Clone Sequence Records

BO10522.5prime Sequence

429 bp (299 high quality bases) assembled on 2006-04-19

> BO10522.5prime
GAAGTTATCAGTCGACATGGCGGAACTGGTGAGGGACTGGCTGGCGGACT
ACCAGCGCATACGGGGTCAGCCCTCGGAGGCGGAAGCGTTCGTGGTGGAG
CACGAAACAGATCCCGAGATCGCCGAAGCCATATTCACCATCTTCAACGA
GCGACAGCGGAACGAAACGCTGGTTCACGACATCTGCCAGCAGCTACTGG
CCTTCTACCGCTCGCCGGAGCAGACGCTGCACAAGTTCCCGCTGCAGTTC
ATCCCAGTGCTTCTCTACACGTACCTCCACTCGGTGGCCGGCGGCGATAA
GAAGGCTGCGCGCGGCGTGGAGACGCTGCTCATCTGCATTTACAATGGCG
AGGTGTCCACCGAAGACGGCGGCCAGAAGGTGGTGGCCTTTCGCATGCCC
ATCCTGGCCCAGACGTCCGTTTACCACGA

BO10522.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6406-PB 1635 CG6406-RB 1..413 17..429 2065 100 Plus
CG6406-PA 1635 CG6406-RA 1..413 17..429 2065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6406-RA 2734 CG6406-RA 203..615 17..429 2065 100 Plus
CG6406-RB 2740 CG6406-RB 209..621 17..429 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17736593..17737005 429..17 2065 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:41:41 has no hits.

BO10522.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:11 Download gff for BO10522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6406-PB 1..412 17..428 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:56:57 Download gff for BO10522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6406-PA 1..412 17..428 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:59 Download gff for BO10522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6406-RB 204..620 13..428 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:19 Download gff for BO10522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6406-RB 204..620 13..428 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:19 Download gff for BO10522.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17736594..17737010 13..428 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:59 Download gff for BO10522.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13624099..13624515 13..428 99   Minus

BO10522.complete Sequence

1666 bp assembled on 2007-10-05

GenBank Submission: FJ631797

> BO10522.complete
GAAGTTATCAGTCGACATGGCGGAACTGGTGAGGGACTGGCTGGCGGACT
ACCAGCGCATACGGGGTCAGCCCTCGGAGGCGGAAGCGTTCGTGGTGGAG
CACGAAACAGATCCCGAGATCGCCGAAGCCATATTCACCATCTTCAACGA
GCGACAGCGGAACGAAACGCTGGTTCACGACATCTGCCAGCAGCTACTGG
CCTTCTACCGCTCGCCGGAGCAGACGCTGCACAAGTTCCCGCTGCAGTTC
ATCCCAGTGCTTCTCTACACGTACCTCCACTCGGTGGCCGGCGGCGATAA
GAAGGCTGCGCGCGGCGTGGAGACGCTGCTCATCTGCATTTACAATGGCG
AGGTGTCCACCGAAGACGGCGGCCAGAAGGTGGTGGCCTTTCGCATGCCC
ATCCTGGCCCAGACGTCCGTTTACCACGAGGTAAAGAACCTGCCCATGAC
GGATCTGCGCCGTTGGGAGGAGAACTGCAACCGGGAGGTGAAGTGGGGTC
CACACCAGCGCATCGAATCGATTCATGCCCAGAACCGAATGCGTATTCTT
ACTGCTTTGCTGTTCTGCTACAACCAGCAGGTCAGCCAAACGCAGAAGTC
TTCGCTACTGCACTTGTGCCGGGTCACATCGCAGTTGGTGAACCAAGGAT
TCACCACGAAGTCGGGTCATGGCCATCGAATGAGTTATGGATCTGATCCT
GCAACCGGAGTACCTTTTCCCAAGCCCTCTTCACCGCGCATTCCACTGTC
CGCCGCCTTCCTGATCGAGCTGGTGCACGCCATCTATTTCGCCATGTTTA
ATGGCTTCGGCACGATAGCCATTCAGACACTGGACGACATCCACAACCGG
GCCATCTACGAGATGTACTCGGAAGTGATCCTGGTGACCAGCGCAGTGCG
AAATTCGCTGCACGCCAATCCTTCCGGACAGCCCAACGACGGTCCCATGG
GCTTGAGTGTGGCCTTAACGCCGTCCACAACAACGGTGACCACATCGGTG
TCCAAGTCTATGATCACGAACGCATCCTTCCGTACGAAAAAACTGCCCGA
CGACATACCCATCCAGGTACAGGACCTCACAATACAGCAGGCTCCGCAGC
AGCTGGCCAGCGTCACTGAGGAGACGGAACCGGGCACCAAGGAATCGCCC
TCAACGAAGGAGAGTTCCGGTACGCGCACTTCCATCATGCGGCCCAGCAT
GGAGGGCATCAAGGCACAGGCACACAAGGCGCTCATTGCGGGCTTCAAGA
AATCTAAGGACAAGGAGAAAGAGAAGGACAAGGAGCCACCGAAGCCACCG
CAGCGCAAGTTCGACAAGCACACGCAGCGCAACTCACTGCTCCAGCTGCA
GGCGGAACCCAGCTCGAATTCCAGCGCGGAACAGCCACCCACCGGCGAAG
TGTTGCCCCTGCAGACGCTCTCGCTGATCAACGAGAACGGCAGCAACAGT
TTCAGCGTGGACAGCGACCTCAACGACGGCGTGCTGGGCGTAAGTGCCAA
CACATCCCTGCCCCCGCTGAGCAGCACCACCAACTCGGTGACCAGTAGCG
ACCTGATCACCAAGAGCTTCGACTCCAGCATTGAACTGGCGCCGATAGGG
CACAGCAGCAGCAATGGCGGCAAGTTGGCCGAGCACGGCTTGGCGGAGGC
AAGCTTTCTAGACCAT

BO10522.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6406-RA 1635 CG6406-PA 1..1632 17..1648 8160 100 Plus
CG6406-RB 1635 CG6406-PB 1..1632 17..1648 8160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6406-RA 2734 CG6406-RA 203..1834 17..1648 8160 100 Plus
CG6406-RB 2740 CG6406-RB 209..1840 17..1648 8160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17735319..17736277 1648..690 4795 100 Minus
2R 25286936 2R 17736332..17737005 690..17 3370 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:03:10 has no hits.

BO10522.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:02 Download gff for BO10522.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 1..1635 17..1649 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:58 Download gff for BO10522.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 193..1829 13..1648 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:16 Download gff for BO10522.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RB 209..1840 17..1650 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:02 Download gff for BO10522.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RA 193..1829 13..1648 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:38 Download gff for BO10522.complete
Subject Subject Range Query Range Percent Splice Strand
CG6406-RB 209..1840 17..1650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:38 Download gff for BO10522.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17735317..17736276 691..1650 99 <- Minus
2R 17736332..17737005 17..690 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:16 Download gff for BO10522.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13622822..13623781 691..1650 99 <- Minus
arm_2R 13623837..13624510 17..690 100   Minus

BO10522.pep Sequence

Translation from 16 to 1666

> BO10522.pep
MAELVRDWLADYQRIRGQPSEAEAFVVEHETDPEIAEAIFTIFNERQRNE
TLVHDICQQLLAFYRSPEQTLHKFPLQFIPVLLYTYLHSVAGGDKKAARG
VETLLICIYNGEVSTEDGGQKVVAFRMPILAQTSVYHEVKNLPMTDLRRW
EENCNREVKWGPHQRIESIHAQNRMRILTALLFCYNQQVSQTQKSSLLHL
CRVTSQLVNQGFTTKSGHGHRMSYGSDPATGVPFPKPSSPRIPLSAAFLI
ELVHAIYFAMFNGFGTIAIQTLDDIHNRAIYEMYSEVILVTSAVRNSLHA
NPSGQPNDGPMGLSVALTPSTTTVTTSVSKSMITNASFRTKKLPDDIPIQ
VQDLTIQQAPQQLASVTEETEPGTKESPSTKESSGTRTSIMRPSMEGIKA
QAHKALIAGFKKSKDKEKEKDKEPPKPPQRKFDKHTQRNSLLQLQAEPSS
NSSAEQPPTGEVLPLQTLSLINENGSNSFSVDSDLNDGVLGVSANTSLPP
LSSTTNSVTSSDLITKSFDSSIELAPIGHSSSNGGKLAEHGLAEASFLDH

BO10522.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6406-PA 544 CG6406-PA 1..544 1..544 2791 100 Plus
CG6406-PB 544 CG6406-PB 1..544 1..544 2791 100 Plus