Clone Sequence Records
BO10525.3prime Sequence
615 bp (356 high quality bases) assembled on 2006-04-19
> BO10525.3prime
ATGGTCTAGAAAGCTTGCGGCCCCACCCATGTCGTCCACGGCGATGGCAC
ACAGCACGTACATCATTCCGGCGCTGAGGAGCGCCGTAACCGGCACCGTT
ACGATCCATGCATAGGCAATATTCCGGAATAGATGCCAATCGACACTGCC
ATCATCCATGGGCGCAACTTCGTTATGGGTCTCCTTATCGGTCTGATCAT
TCGGCTGACTCTTCTTCTTGCGACCTGATGCACTCACATGACCCACAAAA
ACCACCGAACCGACCTTGCAGTGAGTAGTCGAAATGGGCAGGCCAATTTT
GCTGGCCAGCAGTACGGTGATGGCAGCTCCGACTTCAATAGTAAAGCCAG
TCGATGAGGTCATTTTCGTAAGGTCATTGCCAATGGTCTCGATGACTCGT
CGTCCCCACAGCCAGAGACCCACAGAGATGCCGATGCCGCCGTAGATCAG
AATATAGATGGGACTCTCGGCCTGCTGCATAACCGATCCCTCGCGATAGA
TCATATAGAGGGCAATCAGTGGGCCGATGGCGTTGCTCACATCATTGCCG
CCGTGCGCAAAACTGCCAAAATGTGGGCTGTCAGGATCTGCAGAAACGAG
AAGAGCATTGAAATC
BO10525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7628-PA | 2004 | CG7628-RA | 1450..2001 | 570..19 | 2735 | 99.8 | Minus |
CG7628-PA | 2004 | CG7628-RA | 1407..1446 | 615..576 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42575-RB | 2953 | CG42575-RB | 1693..2287 | 615..19 | 2920 | 99.5 | Minus |
CG42575-RA | 3715 | CG7628-RA | 2455..3049 | 615..19 | 2920 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11133667..11133997 | 349..19 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 11133334..11133597 | 615..350 | 1215 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:18:48 has no hits.
BO10525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:17 Download gff for
BO10525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7628-PA | 1407..2004 | 15..615 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:02 Download gff for
BO10525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7628-PA | 1407..2004 | 15..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:26:05 Download gff for
BO10525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42575-RA | 2455..3054 | 14..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:03:07 Download gff for
BO10525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42575-RA | 2455..3054 | 14..615 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:03:07 Download gff for
BO10525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11133334..11133597 | 350..615 | 98 | -> | Minus |
3L | 11133667..11134002 | 14..349 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:26:05 Download gff for
BO10525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11126434..11126697 | 350..615 | 98 | -> | Minus |
arm_3L | 11126767..11127102 | 14..349 | 99 | | Minus |
BO10525.5prime Sequence
522 bp (411 high quality bases) assembled on 2006-04-19
> BO10525.5prime
GAAGTTATCAGTCGACATGGAGAGCTTTGCGCCGGAATTACTTTGGATGG
TAGTCATCGGATTCCTAATCGCCTTCGTACTCGCCTTTGGCATCGGTGCC
AACGACGTGGCCAACTCATTTGGCACCAGTGTCGGCTCCGGTGTTCTGAC
CATCCGGCAGGCATGCGTGCTGGCCACCATTTGCGAAATTTCGGGTGCCG
TTTTGATTGGCTACAAGGTATCGGATACCATGCGCAAGGGAATCCTAGAA
GTTGGCCTATACGAGGGCGCCGAGGAGGTTCTGATGCTGGGCTGCGTGGC
CGCATTGGCCAGTAGCGCCGTTTGGCTGCTGGTGGCCACCTTTTTGAAGT
TGCCTATTTCGGGAACGCACAGTATCGTTGGCTCTACCATTGGATTTTCG
CTAGTGGCGCGCGGTGTACAGGGCCTAAAGTGGTCTACTTTGGGCACAAT
CGTCGGATCGTGGGTCATCTCACCGGGGCTGAGTGGAATTGTGAGCATTC
TGCTCTTCCTGGCCATTCGTCG
BO10525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7628-PA | 2004 | CG7628-RA | 1..506 | 17..522 | 2480 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42575-RB | 2953 | CG42575-RB | 287..792 | 17..522 | 2500 | 99.6 | Plus |
CG42575-RA | 3715 | CG7628-RA | 1049..1554 | 17..522 | 2500 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11129952..11130265 | 209..522 | 1540 | 99.4 | Plus |
3L | 28110227 | 3L | 11129688..11129881 | 17..210 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:42:21 has no hits.
BO10525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:18 Download gff for
BO10525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7628-PA | 1..506 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:04 Download gff for
BO10525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7628-PA | 1..506 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:45:40 Download gff for
BO10525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42575-RA | 1040..1554 | 8..522 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:02:20 Download gff for
BO10525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42575-RA | 1040..1554 | 8..522 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:02:20 Download gff for
BO10525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11129679..11129880 | 8..209 | 98 | -> | Plus |
3L | 11129953..11130265 | 210..522 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:45:40 Download gff for
BO10525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11122779..11122980 | 8..209 | 98 | -> | Plus |
arm_3L | 11123053..11123365 | 210..522 | 99 | | Plus |
BO10525.complete Sequence
2035 bp (2035 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631798
> BO10525.complete
GAAGTTATCAGTCGACATGGAGAGCTTTGCGCCGGAATTACTTTGGATGG
TAGTCATCGGATTCCTAATCGCCTTCGTACTCGCCTTTGGCATCGGTGCC
AACGACGTGGCCAACTCATTTGGCACCAGTGTCGGCTCCGGTGTTCTGAC
CATCCGGCAGGCATGCGTGCTGGCCACCATTTGCGAAATTTCGGGTGCCG
TTTTGATTGGCTACAAGGTATCGGATACCATGCGCAAGGGAATCCTAGAA
GTTGGCCTATACGAGGGCGCCGAGGAGGTTCTGATGCTGGGCTGCGTGGC
CGCATTGGCCAGTAGCGCCGTTTGGCTGCTGGTGGCCACCTTTTTGAAGT
TGCCTATTTCGGGAACGCACAGTATCGTTGGCTCTACCATTGGATTTTCG
CTAGTGGCGCGCGGTGTACAGGGCCTAAAGTGGTCTACTTTGGGCACAAT
CGTCGGATCGTGGTTCATCTCACCGGTGCTGAGTGGAATTGTGAGCATTC
TGCTCTTCCTGGCCATTCGTCGTTTCATCCTACGTGCCCAGGAGCCGCTC
AAGGCCGGATTTCGATCGCTGCCCATCTTCTACGGTGTAACGTTCTTCAT
CAACGTTATCAGCGTTGTGTTGGACGGGCCCAAGCTGCTCTACATGGACA
ACATACCCACTTGGATAGCACTGACCGCCAGTTTTGGTCTCTCTTTGCTG
GTGGCATTGCTTACGCAATTGGTAGTGGTGCCTTTGCAGCGGCGCAAGAT
TGCCAAACGATTGCGGGCCGAGAATCCTGTCAAGTTTAATTTCGAGGACT
CCGTGGAATCTTCCCCGTCGGGAAGTCCCAAGAAGCAGCGTCGTCCCCTG
TCGCTGGTTAGCGAAGGAAAGCCACTGCCTGCCATCGCAGAAATAACCGA
GCTGGTCTCGTTGAGCGACAACTCGCCGAGGACCTTTAAGTTGGCTCCAT
TCGGATTGGCGGCCAAGAACAACAATGCGCTTGGGGAGGAGTACAAGATC
GATCCGCAGCTGATCAAAAAGGCTGAGGATCTGCTGGGCAAGGCTAGCCT
GGACAACACGGATCTGACGATTACCAGTCTGAATTTTATCGACGAGCAGC
AGCAACAACAGCAGCAGCAGCAAAATGGACGCAAGTTGCAGGAGTGCTTC
AAGCGGATGCAGTCGCCCAAGGAGGAGCAGAAGAGCAAGACGAACTCCAT
TGGCACGGACTTGGAAACCGGATCGACCAAAGCCACAAATAACAACCTTC
AAGTGGTGGAGAGCGGCGGCAGCCTTGATCTTATGATCAGTTCCACTTTA
TCGCCCAATTCCAGCAAGGTTCCTCTGATCGAGAGCAAGGAGGCGCTGAA
TGAGCAGGAGGAGGAGCTGAAACGAACGACGGGCGGTGGACGAAGAACCA
GTGGCGCCGAGGAGACTCCGGAGATTTCAATGCTCTTCTCGTTTCTGCAG
ATCCTGACAGCCACATTTGGCAGTTTTGCGCACGGCGGCAATGATGTGAG
CAACGCCATCGGCCCACTGATTGCCCTCTATATGATCTATCGCGAGGGAT
CGGTTATGCAGCAGGCCGAGAGTCCCATCTATATTCTGATCTACGGCGGC
ATCGGCATCTCTGTGGGTCTCTGGCTGTGGGGACGACGAGTCATCGAGAC
CATTGGCAATGACCTTACGAAAATAACCTCATCGACTGGCTTTACTATTG
AAGTCGGAGCTGCCATCACCGTACTGCTGGCCAGCAAAATTGGCCTGCCC
ATTTCGACTACTCACTGCAAGGTCGGTTCGGTGGTTTTTGTGGGTCATGT
GAGTGCATCAGGTCGCAAGAAGAAGAGTCAGCCGAATGATCAGACCGATA
AGGAGACCCATAACGAAGTTGCGCCCATGGATGATGGCAGTGTCGATTGG
CATCTATTCCGGAATATTGCCTATGCATGGATCGTAACGGTGCCGGTTAC
GGCGCTCCTCAGCGCCGGAATGATGTACGTGCTGTGTGCCATCGCCGTGG
ACGACATGGGTGGGGCCGCAAGCTTTCTAGACCAT
BO10525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42575-RB | 2004 | CG42575-PB | 1..2001 | 17..2017 | 10005 | 100 | Plus |
CG42575-RA | 2004 | CG42575-PA | 1..2001 | 17..2017 | 10005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42575-RB | 2953 | CG42575-RB | 287..2287 | 17..2017 | 10005 | 100 | Plus |
CG42575-RA | 3715 | CG7628-RA | 1049..3049 | 17..2017 | 10005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11129952..11130549 | 209..806 | 2990 | 100 | Plus |
3L | 28110227 | 3L | 11133093..11133597 | 1182..1686 | 2525 | 100 | Plus |
3L | 28110227 | 3L | 11132647..11133024 | 806..1183 | 1890 | 100 | Plus |
3L | 28110227 | 3L | 11133667..11133997 | 1687..2017 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 11129688..11129881 | 17..210 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:04:01 has no hits.
BO10525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:08 Download gff for
BO10525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7628-RA | 1..2004 | 17..2021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:25 Download gff for
BO10525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7628-RA | 331..2345 | 8..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:56 Download gff for
BO10525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42575-RA | 1049..3049 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:09 Download gff for
BO10525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7628-RA | 331..2345 | 8..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:40 Download gff for
BO10525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42575-RA | 1049..3049 | 17..2019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:40 Download gff for
BO10525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11129688..11129880 | 17..209 | 100 | -> | Plus |
3L | 11129953..11130549 | 210..806 | 100 | -> | Plus |
3L | 11132648..11133024 | 807..1183 | 100 | -> | Plus |
3L | 11133095..11133597 | 1184..1686 | 100 | -> | Plus |
3L | 11133667..11133997 | 1687..2019 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:56 Download gff for
BO10525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11126767..11127097 | 1687..2019 | 99 | | Plus |
arm_3L | 11122788..11122980 | 17..209 | 100 | -> | Plus |
arm_3L | 11123053..11123649 | 210..806 | 100 | -> | Plus |
arm_3L | 11125748..11126124 | 807..1183 | 100 | -> | Plus |
arm_3L | 11126195..11126697 | 1184..1686 | 100 | -> | Plus |
BO10525.pep Sequence
Translation from 16 to 2035
> BO10525.pep
MESFAPELLWMVVIGFLIAFVLAFGIGANDVANSFGTSVGSGVLTIRQAC
VLATICEISGAVLIGYKVSDTMRKGILEVGLYEGAEEVLMLGCVAALASS
AVWLLVATFLKLPISGTHSIVGSTIGFSLVARGVQGLKWSTLGTIVGSWF
ISPVLSGIVSILLFLAIRRFILRAQEPLKAGFRSLPIFYGVTFFINVISV
VLDGPKLLYMDNIPTWIALTASFGLSLLVALLTQLVVVPLQRRKIAKRLR
AENPVKFNFEDSVESSPSGSPKKQRRPLSLVSEGKPLPAIAEITELVSLS
DNSPRTFKLAPFGLAAKNNNALGEEYKIDPQLIKKAEDLLGKASLDNTDL
TITSLNFIDEQQQQQQQQQNGRKLQECFKRMQSPKEEQKSKTNSIGTDLE
TGSTKATNNNLQVVESGGSLDLMISSTLSPNSSKVPLIESKEALNEQEEE
LKRTTGGGRRTSGAEETPEISMLFSFLQILTATFGSFAHGGNDVSNAIGP
LIALYMIYREGSVMQQAESPIYILIYGGIGISVGLWLWGRRVIETIGNDL
TKITSSTGFTIEVGAAITVLLASKIGLPISTTHCKVGSVVFVGHVSASGR
KKKSQPNDQTDKETHNEVAPMDDGSVDWHLFRNIAYAWIVTVPVTALLSA
GMMYVLCAIAVDDMGGAASFLDH
BO10525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42575-PB | 667 | CG42575-PB | 1..667 | 1..667 | 3345 | 100 | Plus |
CG42575-PA | 667 | CG7628-PA | 1..667 | 1..667 | 3345 | 100 | Plus |