Clone BO10527 Report

Search the DGRC for BO10527

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:105
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptinaC-RA
Protein status:BO10527.pep: validated full length
Sequenced Size:2134

Clone Sequence Records

BO10527.5prime Sequence

332 bp (329 high quality bases) assembled on 2006-04-19

> BO10527.5prime
GAAGTTATCAGTCGACATGGCTGCGGCTGCTGTTGCCACACCGGGGGCCA
CTGTGCTCCCTCCCTCGGTGCCCAGTGCCGCTCCAGGGGCCAAGGCTCCA
GCGGCTGGAGCTGGCAAAGGTCCAGGAAATCTACTGGAGATCACTGGCGA
AGCAAATATCGTCAACTATATGAAGAATCGTCTAAGGAAGGGTGCGATGA
AGCGAAAGGGTCTCGAAATGGTCAATGGTCATCGTTTCGGAGTTAGATTC
TTTAAGAATCCAACCTACTGCGGTCATTGCAAGGATTTCATCTGGGGCTT
TGGCAAGCAAGGTTTTCAGTGCGAGGAATGCC

BO10527.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6518-PA 2103 inaC-RA 1..316 17..332 1580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
inaC-RA 2351 CG6518-RA 111..426 17..332 1580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16898645..16898923 17..295 1395 100 Plus
Blast to na_te.dros performed 2015-02-11 09:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 2318..2375 283..226 118 71.2 Minus

BO10527.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:19 Download gff for BO10527.5prime
Subject Subject Range Query Range Percent Splice Strand
inaC-PA 1..316 17..332 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:05 Download gff for BO10527.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6518-PA 1..316 17..332 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:52:35 Download gff for BO10527.5prime
Subject Subject Range Query Range Percent Splice Strand
inaC-RA 111..426 17..332 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:04 Download gff for BO10527.5prime
Subject Subject Range Query Range Percent Splice Strand
inaC-RA 111..426 17..332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:04 Download gff for BO10527.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16898645..16898922 17..294 100 -> Plus
2R 16899084..16899115 295..326 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:52:35 Download gff for BO10527.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12786150..12786427 17..294 100 -> Plus
arm_2R 12786589..12786620 295..326 100   Plus

BO10527.complete Sequence

2134 bp assembled on 2007-11-02

GenBank Submission: FJ631799

> BO10527.complete
GAAGTTATCAGTCGACATGGCTGCGGCTGCTGTTGCCACACCGGGGGCCA
CTGTGCTCCCTCCCTCGGTGCCCAGTGCCGCTCCAGGGGCCAAGGCTCCA
GCGGCTGGAGCTGGCAAAGGTCCAGGAAATCTACTGGAGATCACTGGCGA
AGCAAATATCGTCAACTATATGAAGAATCGTCTAAGGAAGGGTGCGATGA
AGCGAAAGGGTCTCGAAATGGTCAATGGTCATCGTTTCGGAGTTAGATTC
TTTAAGAATCCAACCTACTGCGGTCATTGCAAGGATTTCATCTGGGGCTT
TGGCAAGCAAGGTTTTCAGTGCGAGGAATGCCGCTTCAACATTCACCAGA
AGTGCTGTAAATTTGTGGTGTTCAAATGTCCTGGCAAGGACACGGACTTC
GATGCCGACTGCGCTAAGGTGAAGCACGGCTGGATTTCCACCACCTACAC
CACACCGACATTCTGCGACGAGTGCGGACTGCTGCTCCATGGAGTCGCCC
ATCAGGGCGTCAAGTGCGAGAATTGCAACCTAAATGTGCATCACGCCTGC
CAGGAGACAGTGCCACCGATGTGTGGTGCGGACATCAGCGAGGTGAGGGG
TAAACTACTGCTATACGTCGAGCTTAAGGGCAATAACTTGAAAGTTGATA
TTAAGGAGGCAGCTAACCTCATTCCCATGGATACCAACGGGTTTAGCGAT
CCCTATATTGCAGTGCAAATGCATCCGGACCGTTCGGGGCGCACCAAAAA
GAAGACCAAGACCATTCAGAAAAACCTCAATCCAGTGTTCAACGAGACTT
TTACTTTTGAGTTGCAGCCGCAGGACCGTGACAAGCGTTTGCTCATCGAG
GTTTGGGATTGGGATCGAACTTCTCGCAATGATTTCATGGGATCGTTCTC
GTTCAGCCTGGAGGAACTGCAAAAGGAGCCAGTTGATGGCTGGTATAAGT
TTCTGTCGCAAGTGGAGGGTGAACATTATAACATACCCTGTGTGGATGCC
TTTAATGATATAGCTCGCTTAAGGGATGAAGTTAGGCACGATCGTCGTCC
GAATGAAAAGCGTCGCATGGACAACAAGGATATGCCGCATAATATGAGCA
AACGCGATATGATTCGAGCTGCTGATTTCAACTTTGTTAAAGTTATTGGC
AAGGGATCCTTTGGCAAAGTCCTGCTGGCCGAGCGTCGTGGCACGGATGA
GCTGTATGCCGTGAAGGTCCTGCGAAAGGATGTCATTATCCAAACGGACG
ATATGGAGCTGCCAATGAATGAGAAGAAAATTCTAGCCCTATCCGGACGT
CCTCCTTTCCTCGTCTCCATGCACTCATGTTTCCAGACTATGGACCGATT
ATTCTTCGTAATGGAGTACTGTAAGGGTGGAGATCTTATGTACCATATGC
AGCAGTATGGAAGGTTCAAGGAGTCTGTGGCTATTTTTTACGCTGTGGAA
GTGGCTATTGCTCTGTTTTTCCTCCACGAGCGTGATATTATCTATAGAGA
TCTAAAGCTGGACAACATTTTGCTGGATGGTGAGGGGCATGTAAAGCTGG
TCGACTTTGGATTGAGCAAAGAGGGCGTTACCGAGCGGCAGACCACACGA
ACCTTTTGTGGTACTCCAAATTATATGGCTCCCGAAATTGTTAGCTACGA
TCCGTATTCCATCGCCGCTGATTGGTGGTCTTTTGGTGTATTGCTTTTCG
AATTCATGGCAGGTCAGGCTCCATTCGAAGGAGATGATGAAACTACTGTC
TTTAGGAACATAAAGGACAAGAAGGCGGTGTTTCCAAAGCATTTCAGCGT
GGAGGCCATGGATATAATAACGAGCTTCCTGACCAAAAAGCCCAACAATA
GATTGGGTGCAGGCCGCTATGCCAGACAGGAGATTACCACGCATCCTTTC
TTCCGGAATGTGGACTGGGATAAGGCAGAGGCATGCGAAATGGAGCCACC
TATTAAGCCAATGATTAAACATCGCAAGGATATAAGCAACTTTGATGATG
CCTTTACCAAGGAGAAGACGGACTTAACTCCAACGGACAAGCTTTTTATG
ATGAATTTGGACCAGAACGATTTTATCGGATTTTCTTTCATGAATCCCGA
GTTTATAACCATCATTGCAAGCTTTCTAGACCAT

BO10527.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
inaC-RA 2103 CG6518-PA 1..2100 17..2116 10500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
inaC-RA 2351 CG6518-RA 111..2210 17..2116 10500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16900114..16900512 1036..1434 1995 100 Plus
2R 25286936 2R 16898645..16898923 17..295 1395 100 Plus
2R 25286936 2R 16899832..16900060 808..1036 1145 100 Plus
2R 25286936 2R 16900576..16900777 1435..1636 1010 100 Plus
2R 25286936 2R 16899169..16899364 326..521 980 100 Plus
2R 25286936 2R 16900837..16901025 1637..1825 945 100 Plus
2R 25286936 2R 16899615..16899771 651..807 785 100 Plus
2R 25286936 2R 16901285..16901434 1967..2116 750 100 Plus
2R 25286936 2R 16901083..16901223 1826..1966 705 100 Plus
2R 25286936 2R 16899425..16899558 522..655 655 99.3 Plus
Blast to na_te.dros performed on 2014-11-28 01:06:31 has no hits.

BO10527.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:10 Download gff for BO10527.complete
Subject Subject Range Query Range Percent Splice Strand
inaC-RA 1..2103 17..2120 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:39 Download gff for BO10527.complete
Subject Subject Range Query Range Percent Splice Strand
inaC-RA 63..2165 17..2120 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:09 Download gff for BO10527.complete
Subject Subject Range Query Range Percent Splice Strand
inaC-RA 111..2210 17..2118 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:11 Download gff for BO10527.complete
Subject Subject Range Query Range Percent Splice Strand
inaC-RA 63..2162 17..2118 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:39 Download gff for BO10527.complete
Subject Subject Range Query Range Percent Splice Strand
inaC-RA 111..2210 17..2118 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:39 Download gff for BO10527.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16899615..16899771 651..807 100 -> Plus
2R 16899832..16900060 808..1036 100 -> Plus
2R 16898645..16898922 17..294 100 -> Plus
2R 16899084..16899115 295..326 100 -> Plus
2R 16899170..16899364 327..521 100 -> Plus
2R 16899425..16899553 522..650 100 -> Plus
2R 16900115..16900512 1037..1434 100 -> Plus
2R 16900576..16900777 1435..1636 100 -> Plus
2R 16900837..16901025 1637..1825 100 -> Plus
2R 16901083..16901223 1826..1966 100 -> Plus
2R 16901285..16901434 1967..2118 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:09 Download gff for BO10527.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12786150..12786427 17..294 100 -> Plus
arm_2R 12786589..12786620 295..326 100 -> Plus
arm_2R 12786675..12786869 327..521 100 -> Plus
arm_2R 12786930..12787058 522..650 100 -> Plus
arm_2R 12787120..12787276 651..807 100 -> Plus
arm_2R 12787337..12787565 808..1036 100 -> Plus
arm_2R 12787620..12788017 1037..1434 100 -> Plus
arm_2R 12788081..12788282 1435..1636 100 -> Plus
arm_2R 12788342..12788530 1637..1825 100 -> Plus
arm_2R 12788588..12788728 1826..1966 100 -> Plus
arm_2R 12788790..12788939 1967..2118 98   Plus

BO10527.pep Sequence

Translation from 16 to 2134

> BO10527.pep
MAAAAVATPGATVLPPSVPSAAPGAKAPAAGAGKGPGNLLEITGEANIVN
YMKNRLRKGAMKRKGLEMVNGHRFGVRFFKNPTYCGHCKDFIWGFGKQGF
QCEECRFNIHQKCCKFVVFKCPGKDTDFDADCAKVKHGWISTTYTTPTFC
DECGLLLHGVAHQGVKCENCNLNVHHACQETVPPMCGADISEVRGKLLLY
VELKGNNLKVDIKEAANLIPMDTNGFSDPYIAVQMHPDRSGRTKKKTKTI
QKNLNPVFNETFTFELQPQDRDKRLLIEVWDWDRTSRNDFMGSFSFSLEE
LQKEPVDGWYKFLSQVEGEHYNIPCVDAFNDIARLRDEVRHDRRPNEKRR
MDNKDMPHNMSKRDMIRAADFNFVKVIGKGSFGKVLLAERRGTDELYAVK
VLRKDVIIQTDDMELPMNEKKILALSGRPPFLVSMHSCFQTMDRLFFVME
YCKGGDLMYHMQQYGRFKESVAIFYAVEVAIALFFLHERDIIYRDLKLDN
ILLDGEGHVKLVDFGLSKEGVTERQTTRTFCGTPNYMAPEIVSYDPYSIA
ADWWSFGVLLFEFMAGQAPFEGDDETTVFRNIKDKKAVFPKHFSVEAMDI
ITSFLTKKPNNRLGAGRYARQEITTHPFFRNVDWDKAEACEMEPPIKPMI
KHRKDISNFDDAFTKEKTDLTPTDKLFMMNLDQNDFIGFSFMNPEFITII
ASFLDH

BO10527.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
inaC-PA 700 CG6518-PA 1..700 1..700 3772 100 Plus
Pkc53E-PF 670 CG6622-PF 18..667 44..697 2186 58.1 Plus
Pkc53E-PA 670 CG6622-PA 18..667 44..697 2186 58.1 Plus
Pkc53E-PB 679 CG6622-PB 18..676 44..697 2155 57.3 Plus
Pkc53E-PE 678 CG6622-PE 18..675 44..697 2146 57 Plus