Clone Sequence Records
BO10537.5prime Sequence
334 bp (333 high quality bases) assembled on 2006-04-19
> BO10537.5prime
GAAGTTATCAGTCGACATGTGTGGTTGTTGGAAGGTTTTCTGCCTGCTGG
CGCTACTTTCCCTGGTCGCTTTCAGCGATTCCCTGCGAATTCTGGGTCTG
TTTCCGCACCCGGCCATCAGTCACTTCAAGTTCTTTCACCCAATCATGCG
CGGATTGGCCGAGGCCGGTCACAGCGTGGATGTCATCAGTCCATTCGAGG
ACAAGGACCCTCCAAACGGATACAAGGACCACCTGCTGCCGCCCTCCACC
TTGACAGACACTATTAGCTTAGAGGACTTCGAACGGCCCTACAGCTTCCT
ATTTCACTATGTAGAGTTCTTTATCCTGCACAAA
BO10537.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-PC | 1554 | CG17322-RC | 1..318 | 17..334 | 1590 | 100 | Plus |
CG17322-PD | 1554 | CG17322-RD | 1..318 | 17..334 | 1590 | 100 | Plus |
CG17322-PA | 1554 | CG17322-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
CG17322-PB | 1554 | CG17322-RB | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-RB | 1903 | CG17322-RB | 155..472 | 17..334 | 1590 | 100 | Plus |
CG17322-RA | 1807 | CG17322-RA | 59..376 | 17..334 | 1590 | 100 | Plus |
CG17322-RD | 1900 | CG17322-RD | 152..469 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18827002..18827260 | 17..275 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 18827508..18827569 | 273..334 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:01:39 has no hits.
BO10537.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:30 Download gff for
BO10537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-PD | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:18 Download gff for
BO10537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-PB | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:55 Download gff for
BO10537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 139..466 | 4..331 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:39 Download gff for
BO10537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 139..466 | 4..331 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:39 Download gff for
BO10537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18826989..18827259 | 4..274 | 98 | -> | Plus |
2L | 18827510..18827566 | 275..331 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:55 Download gff for
BO10537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18826989..18827259 | 4..274 | 98 | -> | Plus |
arm_2L | 18827510..18827566 | 275..331 | 100 | | Plus |
BO10537.complete Sequence
1585 bp (1585 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631800
> BO10537.complete
GAAGTTATCAGTCGACATGTGTGGTTGTTGGAAGGTTTTCTGCCTGCTGG
CGCTACTTTCCCTGGTCGCTTTCAGCGATTCCCTGCGAATTCTGGGTCTG
TTTCCGCACCCGGCCATCAGTCACTTCAAGTTCTTTCACCCAATCATGCG
CGGATTGGCCGAGGCCGGTCACAGCGTGGATGTCATCAGTCCATTCGAGG
ACAAGGACCCTCCAAACGGATACAAGGACCACCTGCTGCCGCCCTCCACC
TTGACAGACACTATTAGCTTAGAGGACTTCGAACGGCCCTACAGCTTCCT
ATTTCACTATGTAGAGTTCTTTATCCTGCACAAAATGGGAAGAGAGGACT
GCAATACCACACTGCACAGCAGAGCCCTAACTGAGATCCTTAAGAATCCT
CCTGGCTACTACGATGTAATTTTACTGGAGCAATTCAATACTGACTGTGC
GATGAGCGTGGCCCATGTTTTCCAAGCTCCGGTCATTGGAATGAGCAGCT
GTGCCCTGATGCCATGGCATTATGAACGATTTGGAGCCCCTCTGATCCCA
TCGTATATATCAGCATTGTTCCAGGGACAATCCCAGGAGATGTCCTTTGC
GGGACGATTGGGCAACTGGATTACTGTGCACTCCCTCAACTTGCTGTATA
AAATGTTTACAGTTCCCGCCGGAAACGCCTTGATTCGCCAAAGATTCGGT
CCTGGACTGCCGTCCACGGAGGACTTGGTGAGGAATACTTCTCTAATGCT
GGTCAACCAGCACTTTTCGCTCAGTGGGCCAAAGCCTTTGCCCCCAAACG
TCATCGAAGTGGGTGGTGTACATATAAGTCCACCGAAACCGCTGCCCTCG
GATCTTCAGAAAATACTGGATAACGCACCCAAAGGAGTCATCCTAATTAG
CTGGGGCTCTCAGCTGAAAGCGTGTTCTCTTTCCGCTGCTCGGAGAGATG
GAATCGTTAAAGCGATTGGAAGATTGGAGCAGGAGGTCATCTGGAAGTAT
GAAAATGACACGCTGCCCAATAAGCCACCAAATCTGCACATCAGGAAGTG
GCTGCCTCAGCGAGACATCCTCGCTCATCCAAATCTAAAGGTATTTATGT
CCCACGGTGGCTTAATGGGCACCACGGAGGCGGTCTCCAGTGCTGTGCCG
ATTGTGGGTGTCCCAATTTACGGCGACCAATCCCTCAATATTGCCGCATT
GGTGCAGCGCGGAATGGCCTTGCAATTAGAGCTTAAGAAACTGGATGAGA
ATACTGTCTACGAAGCGTTGACCAAGGCACTAGATCCTTCTTTCAAGGCA
AGAGCCAAGGAGGTGGCCTCATCGTACAACAACCGCATCCAAGGTCCCTT
GGAGACGGCCATTTGGTGGGTGGAACATGTGGCGGAGACGAAAGGAGCTC
CTCTGACCCAACCAAGTGCCGTGCATCTCTCCCGCTTTGTTTACTACTCC
TTGGATGTCTACTCGGTCGTGGCCCTAAGCCTGCTACTACCTGTGATCAC
GCTCTTGGGACTAATCCGAATGTTTAAAAGAAGGGAACCCAAAGGTGACC
GCAAACTAAAACGCAAAGCAAGCTTTCTAGACCAT
BO10537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-RB | 1554 | CG17322-PB | 1..1551 | 17..1567 | 7755 | 100 | Plus |
CG17322-RA | 1554 | CG17322-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
CG17322-RD | 1554 | CG17322-PD | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-RB | 1903 | CG17322-RB | 155..1705 | 17..1567 | 7755 | 100 | Plus |
CG17322-RA | 1807 | CG17322-RA | 59..1609 | 17..1567 | 7755 | 100 | Plus |
CG17322-RD | 1900 | CG17322-RD | 152..1702 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18827946..18828861 | 652..1567 | 4580 | 100 | Plus |
2L | 23513712 | 2L | 18827508..18827886 | 273..651 | 1895 | 100 | Plus |
2L | 23513712 | 2L | 18827002..18827260 | 17..275 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 18825560..18825713 | 978..1131 | 245 | 77.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:12:07 has no hits.
BO10537.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:10 Download gff for
BO10537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RA | 1..1554 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:28 Download gff for
BO10537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RA | 51..1612 | 11..1573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:44 Download gff for
BO10537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 152..1702 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:10 Download gff for
BO10537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RA | 51..1612 | 11..1573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:07 Download gff for
BO10537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17322-RD | 152..1702 | 17..1569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:07 Download gff for
BO10537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18827002..18827259 | 17..274 | 100 | -> | Plus |
2L | 18827510..18827886 | 275..651 | 100 | -> | Plus |
2L | 18827946..18828861 | 652..1569 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:44 Download gff for
BO10537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18827510..18827886 | 275..651 | 100 | -> | Plus |
arm_2L | 18827002..18827259 | 17..274 | 100 | -> | Plus |
arm_2L | 18827946..18828861 | 652..1569 | 99 | | Plus |
BO10537.pep Sequence
Translation from 16 to 1585
> BO10537.pep
MCGCWKVFCLLALLSLVAFSDSLRILGLFPHPAISHFKFFHPIMRGLAEA
GHSVDVISPFEDKDPPNGYKDHLLPPSTLTDTISLEDFERPYSFLFHYVE
FFILHKMGREDCNTTLHSRALTEILKNPPGYYDVILLEQFNTDCAMSVAH
VFQAPVIGMSSCALMPWHYERFGAPLIPSYISALFQGQSQEMSFAGRLGN
WITVHSLNLLYKMFTVPAGNALIRQRFGPGLPSTEDLVRNTSLMLVNQHF
SLSGPKPLPPNVIEVGGVHISPPKPLPSDLQKILDNAPKGVILISWGSQL
KACSLSAARRDGIVKAIGRLEQEVIWKYENDTLPNKPPNLHIRKWLPQRD
ILAHPNLKVFMSHGGLMGTTEAVSSAVPIVGVPIYGDQSLNIAALVQRGM
ALQLELKKLDENTVYEALTKALDPSFKARAKEVASSYNNRIQGPLETAIW
WVEHVAETKGAPLTQPSAVHLSRFVYYSLDVYSVVALSLLLPVITLLGLI
RMFKRREPKGDRKLKRKASFLDH
BO10537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17322-PB | 517 | CG17322-PB | 1..517 | 1..517 | 2713 | 100 | Plus |
CG17322-PA | 517 | CG17322-PA | 1..517 | 1..517 | 2713 | 100 | Plus |
CG17322-PD | 517 | CG17322-PD | 1..517 | 1..517 | 2713 | 100 | Plus |
CG17322-PC | 517 | CG17322-PC | 1..517 | 1..517 | 2713 | 100 | Plus |
CG17323-PD | 519 | CG17323-PD | 9..506 | 7..502 | 1570 | 59.8 | Plus |