Clone BO10537 Report

Search the DGRC for BO10537

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:105
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG17322-RA
Protein status:BO10537.pep: validated full length
Sequenced Size:1585

Clone Sequence Records

BO10537.5prime Sequence

334 bp (333 high quality bases) assembled on 2006-04-19

> BO10537.5prime
GAAGTTATCAGTCGACATGTGTGGTTGTTGGAAGGTTTTCTGCCTGCTGG
CGCTACTTTCCCTGGTCGCTTTCAGCGATTCCCTGCGAATTCTGGGTCTG
TTTCCGCACCCGGCCATCAGTCACTTCAAGTTCTTTCACCCAATCATGCG
CGGATTGGCCGAGGCCGGTCACAGCGTGGATGTCATCAGTCCATTCGAGG
ACAAGGACCCTCCAAACGGATACAAGGACCACCTGCTGCCGCCCTCCACC
TTGACAGACACTATTAGCTTAGAGGACTTCGAACGGCCCTACAGCTTCCT
ATTTCACTATGTAGAGTTCTTTATCCTGCACAAA

BO10537.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17322-PC 1554 CG17322-RC 1..318 17..334 1590 100 Plus
CG17322-PD 1554 CG17322-RD 1..318 17..334 1590 100 Plus
CG17322-PA 1554 CG17322-RA 1..318 17..334 1590 100 Plus
CG17322-PB 1554 CG17322-RB 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17322-RB 1903 CG17322-RB 155..472 17..334 1590 100 Plus
CG17322-RA 1807 CG17322-RA 59..376 17..334 1590 100 Plus
CG17322-RD 1900 CG17322-RD 152..469 17..334 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18827002..18827260 17..275 1295 100 Plus
2L 23513712 2L 18827508..18827569 273..334 310 100 Plus
Blast to na_te.dros performed on 2015-02-10 04:01:39 has no hits.

BO10537.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:30 Download gff for BO10537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17322-PD 1..315 17..331 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:18 Download gff for BO10537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17322-PB 1..315 17..331 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:55 Download gff for BO10537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17322-RD 139..466 4..331 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:19:39 Download gff for BO10537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17322-RD 139..466 4..331 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:19:39 Download gff for BO10537.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18826989..18827259 4..274 98 -> Plus
2L 18827510..18827566 275..331 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:55 Download gff for BO10537.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18826989..18827259 4..274 98 -> Plus
arm_2L 18827510..18827566 275..331 100   Plus

BO10537.complete Sequence

1585 bp (1585 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ631800

> BO10537.complete
GAAGTTATCAGTCGACATGTGTGGTTGTTGGAAGGTTTTCTGCCTGCTGG
CGCTACTTTCCCTGGTCGCTTTCAGCGATTCCCTGCGAATTCTGGGTCTG
TTTCCGCACCCGGCCATCAGTCACTTCAAGTTCTTTCACCCAATCATGCG
CGGATTGGCCGAGGCCGGTCACAGCGTGGATGTCATCAGTCCATTCGAGG
ACAAGGACCCTCCAAACGGATACAAGGACCACCTGCTGCCGCCCTCCACC
TTGACAGACACTATTAGCTTAGAGGACTTCGAACGGCCCTACAGCTTCCT
ATTTCACTATGTAGAGTTCTTTATCCTGCACAAAATGGGAAGAGAGGACT
GCAATACCACACTGCACAGCAGAGCCCTAACTGAGATCCTTAAGAATCCT
CCTGGCTACTACGATGTAATTTTACTGGAGCAATTCAATACTGACTGTGC
GATGAGCGTGGCCCATGTTTTCCAAGCTCCGGTCATTGGAATGAGCAGCT
GTGCCCTGATGCCATGGCATTATGAACGATTTGGAGCCCCTCTGATCCCA
TCGTATATATCAGCATTGTTCCAGGGACAATCCCAGGAGATGTCCTTTGC
GGGACGATTGGGCAACTGGATTACTGTGCACTCCCTCAACTTGCTGTATA
AAATGTTTACAGTTCCCGCCGGAAACGCCTTGATTCGCCAAAGATTCGGT
CCTGGACTGCCGTCCACGGAGGACTTGGTGAGGAATACTTCTCTAATGCT
GGTCAACCAGCACTTTTCGCTCAGTGGGCCAAAGCCTTTGCCCCCAAACG
TCATCGAAGTGGGTGGTGTACATATAAGTCCACCGAAACCGCTGCCCTCG
GATCTTCAGAAAATACTGGATAACGCACCCAAAGGAGTCATCCTAATTAG
CTGGGGCTCTCAGCTGAAAGCGTGTTCTCTTTCCGCTGCTCGGAGAGATG
GAATCGTTAAAGCGATTGGAAGATTGGAGCAGGAGGTCATCTGGAAGTAT
GAAAATGACACGCTGCCCAATAAGCCACCAAATCTGCACATCAGGAAGTG
GCTGCCTCAGCGAGACATCCTCGCTCATCCAAATCTAAAGGTATTTATGT
CCCACGGTGGCTTAATGGGCACCACGGAGGCGGTCTCCAGTGCTGTGCCG
ATTGTGGGTGTCCCAATTTACGGCGACCAATCCCTCAATATTGCCGCATT
GGTGCAGCGCGGAATGGCCTTGCAATTAGAGCTTAAGAAACTGGATGAGA
ATACTGTCTACGAAGCGTTGACCAAGGCACTAGATCCTTCTTTCAAGGCA
AGAGCCAAGGAGGTGGCCTCATCGTACAACAACCGCATCCAAGGTCCCTT
GGAGACGGCCATTTGGTGGGTGGAACATGTGGCGGAGACGAAAGGAGCTC
CTCTGACCCAACCAAGTGCCGTGCATCTCTCCCGCTTTGTTTACTACTCC
TTGGATGTCTACTCGGTCGTGGCCCTAAGCCTGCTACTACCTGTGATCAC
GCTCTTGGGACTAATCCGAATGTTTAAAAGAAGGGAACCCAAAGGTGACC
GCAAACTAAAACGCAAAGCAAGCTTTCTAGACCAT

BO10537.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17322-RB 1554 CG17322-PB 1..1551 17..1567 7755 100 Plus
CG17322-RA 1554 CG17322-PA 1..1551 17..1567 7755 100 Plus
CG17322-RD 1554 CG17322-PD 1..1551 17..1567 7755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17322-RB 1903 CG17322-RB 155..1705 17..1567 7755 100 Plus
CG17322-RA 1807 CG17322-RA 59..1609 17..1567 7755 100 Plus
CG17322-RD 1900 CG17322-RD 152..1702 17..1567 7755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18827946..18828861 652..1567 4580 100 Plus
2L 23513712 2L 18827508..18827886 273..651 1895 100 Plus
2L 23513712 2L 18827002..18827260 17..275 1295 100 Plus
2L 23513712 2L 18825560..18825713 978..1131 245 77.3 Plus
Blast to na_te.dros performed on 2014-11-27 16:12:07 has no hits.

BO10537.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:10 Download gff for BO10537.complete
Subject Subject Range Query Range Percent Splice Strand
CG17322-RA 1..1554 17..1571 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:28 Download gff for BO10537.complete
Subject Subject Range Query Range Percent Splice Strand
CG17322-RA 51..1612 11..1573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:44 Download gff for BO10537.complete
Subject Subject Range Query Range Percent Splice Strand
CG17322-RD 152..1702 17..1569 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:10 Download gff for BO10537.complete
Subject Subject Range Query Range Percent Splice Strand
CG17322-RA 51..1612 11..1573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:07 Download gff for BO10537.complete
Subject Subject Range Query Range Percent Splice Strand
CG17322-RD 152..1702 17..1569 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:07 Download gff for BO10537.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18827002..18827259 17..274 100 -> Plus
2L 18827510..18827886 275..651 100 -> Plus
2L 18827946..18828861 652..1569 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:44 Download gff for BO10537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18827510..18827886 275..651 100 -> Plus
arm_2L 18827002..18827259 17..274 100 -> Plus
arm_2L 18827946..18828861 652..1569 99   Plus

BO10537.pep Sequence

Translation from 16 to 1585

> BO10537.pep
MCGCWKVFCLLALLSLVAFSDSLRILGLFPHPAISHFKFFHPIMRGLAEA
GHSVDVISPFEDKDPPNGYKDHLLPPSTLTDTISLEDFERPYSFLFHYVE
FFILHKMGREDCNTTLHSRALTEILKNPPGYYDVILLEQFNTDCAMSVAH
VFQAPVIGMSSCALMPWHYERFGAPLIPSYISALFQGQSQEMSFAGRLGN
WITVHSLNLLYKMFTVPAGNALIRQRFGPGLPSTEDLVRNTSLMLVNQHF
SLSGPKPLPPNVIEVGGVHISPPKPLPSDLQKILDNAPKGVILISWGSQL
KACSLSAARRDGIVKAIGRLEQEVIWKYENDTLPNKPPNLHIRKWLPQRD
ILAHPNLKVFMSHGGLMGTTEAVSSAVPIVGVPIYGDQSLNIAALVQRGM
ALQLELKKLDENTVYEALTKALDPSFKARAKEVASSYNNRIQGPLETAIW
WVEHVAETKGAPLTQPSAVHLSRFVYYSLDVYSVVALSLLLPVITLLGLI
RMFKRREPKGDRKLKRKASFLDH

BO10537.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17322-PB 517 CG17322-PB 1..517 1..517 2713 100 Plus
CG17322-PA 517 CG17322-PA 1..517 1..517 2713 100 Plus
CG17322-PD 517 CG17322-PD 1..517 1..517 2713 100 Plus
CG17322-PC 517 CG17322-PC 1..517 1..517 2713 100 Plus
CG17323-PD 519 CG17323-PD 9..506 7..502 1570 59.8 Plus