Clone Sequence Records
BO10540.5prime Sequence
609 bp (579 high quality bases) assembled on 2006-04-19
> BO10540.5prime
GAAGTTATCAGTCGACATGTCTGGCTTAGAGTACGGGTTGCATAGATACG
ATGATCTGCCGCTGGAGATTGTTTTGAAGATTTTCAGCTATCTCGGCTAC
TCGGACTTACAAGCGGCAGGATCCACCTGCCAGCGATGGCATGCGGCGCT
GGATCAGGCGGAATTTAACCAGCGCACGCGAGTCTGCTTCTCCAAGGTGG
TGCTATCGGATCAATTGAGTCCTGGAGTGGATCTGATGCGCTGCGAGCGG
CGTTTCCAGCACTTCCTGTTCGAGGACGTGACACTGGGACAAGTAAAGGA
ATTGATGCGCTTCATGGGCAGGACCGCTCAGTCCCTGGCTCTGGACAATG
TGGATTTGAATGACAAACAGTTCTACGGCATGCTGGGCGTGCTGCCCCAT
CTCCACTCGCTGTCGCTGAAGCGCTGTCTGCCGCTGTTCATGTCCGGCTC
TTTCCTGGACTCTTACAACAACTCCTGTCCTGACCTAAACGACCTGGCAA
GCAATCTGGCCGGCATCAAGGAGCTGACGCTGTGCGAGAACCAATACCTC
ACGGATGCCATTCTTATGCGTCTCACATCGTTCATGCCCAGTCTGGAAGC
GATTAACAT
BO10540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8272-PA | 2070 | CG8272-RA | 1..593 | 17..609 | 2965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8272-RB | 2804 | CG8272-RB | 102..694 | 17..609 | 2965 | 100 | Plus |
| CG8272-RA | 2804 | CG8272-RA | 102..694 | 17..609 | 2965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8890577..8891120 | 609..66 | 2720 | 100 | Minus |
| 2R | 25286936 | 2R | 8891250..8891300 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:20:37 has no hits.
BO10540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:32 Download gff for
BO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-PA | 1..593 | 17..609 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:20 Download gff for
BO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-PA | 1..593 | 17..609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:00:39 Download gff for
BO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 95..694 | 6..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:45 Download gff for
BO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 95..694 | 6..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:45 Download gff for
BO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8890577..8891118 | 68..609 | 100 | <- | Minus |
| 2R | 8891250..8891307 | 6..67 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:00:39 Download gff for
BO10540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4778082..4778623 | 68..609 | 100 | <- | Minus |
| arm_2R | 4778755..4778812 | 6..67 | 91 | | Minus |
BO10540.complete Sequence
2101 bp (2101 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631801
> BO10540.complete
GAAGTTATCAGTCGACATGTCTGGCTTAGAGTACGGGTTGCATAGATACG
ATGATCTGCCGCTGGAGATTGTTTTGAAGATTTTCAGCTATCTCGGCTAC
TCGGACTTACAAGCGGCAGGATCCACCTGCCAGCGATGGCATGCGGCGCT
GGATCAGGCGGAATTTAACCAGCGCACGCGAGTCTGCTTCTCCAAGGTGG
TGCTATCGGATCAATTGAGTCCTGGAGTGGATCTGATGCGCTGCGAGCGG
CGTTTCCAGCACTTCCTGTTCGAGGACGTGACACTGGGACAAGTAAAGGA
ATTGATGCGCTTCATGGGCAGGACCGCTCAGTCCCTGGCTCTGGACAATG
TGGATTTGAATGACAAACAGTTCTACGGCATGCTGGGCGTGCTGCCCCAT
CTCCACTCGCTGTCGCTGAAGCGCTGTCTGCCGCTGTTCATGTCCGGCTC
TTTCCTGGACTCTTACAACAACTCCTGTCCTGACCTAAACGACCTGGCAA
GCAATCTGGCCGGCATCAAGGAGCTGACGCTGTGCGAGAACCAATACCTC
ACGGATGCCATTCTTATGCGTCTCACATCGTTCATGCCCAGTCTGGAAGC
GATTAACATGTCCGGCTGTCACATAGCCTTTCACAATGCTATTCATCGCA
GATTTTACCCTGCCACCAGCTCCTCGGATCACGTTTTGCCCAGCGAGTCT
GTGCTCACGTTCAAGTTCATCCTCACCATTCTGAACCTGCAGCGACGTAC
GTTGCGCGTGTTGAACTTTAGCCACACCCTAATTGGCCAGGCTTTGTTGG
CCCTTTGCGACCTCAATCTCCAACTGCAGCGCCTCTATTTGGCCGGATGC
AGACAGCTTAACTGCACCACAATCCTGAACTTTCTAGCCACACAGCCCCA
GTTGTGTGCCCTCGATTTGTCGGCCACAATGTGTGTTAACGATGAAAATC
TGGCCGCCTTGGTACAAACTAATCCGCAGCTGGAGCACTTGAAGGTGAAC
GGCTGCCTGAGCATTACAAATGCTGGTGCCATCCACTTGGCCAAGCTAAA
GTGTCTCAAAAGTCTGGACATCTCAAACTGCGATAACTTGACAAGCAGCG
GCATCATAGAAGGCATCGCTAGCGAGGAGAATCCGGTAATACAGGAGCTG
AACGTTTCATACCTTCAGATCTGCGAGGAATGCATCAAGGCAATTGCCAG
TAACCTACGATGTCTGCGATCACTGCACTTGAATCACTGCGTCAATGGAG
CCACCGATGAGGCTATCCAGTCGGTCATCGGCCAGCTGCGATGGCTGCGC
GAGCTCTCTTTAGAGCACTGCAGTGGGTTAACCGATGCAGCCCTCACAGG
TATAAACATATCCAAGCTGGAAATGAGTCGTAAGCAGTCGGGTTCGCAGG
TGTCGTCGATGGACAACTTCTACCCGCCGTACTCGAACACGCTGGCGGAA
CGAGACAGCCTGGCGGGTTCCCTGCAGTCCATTAAGATATCGCTCAGGAG
CAAGGCCGAGGATGAGATTGTTCGGGATGCCCGGCGAAAGCAAGCCATGC
TGGCCGCCTACGAAATGAACCTGATACGAGAGGATGATTTCGAGGGTCAC
AACATTCAGCAGTTGCGGGGATTGCGATCGCTAAACTTGCGTGGCTGCAA
TAAGATCAGTGATGTATCCCTGAAATATGGGCTGAAGCACATCGAGCTGA
GGCGGCTAATGCTCTCGAATTGCCAGCAGATTTCCCTGCTGGGCATGGAG
GCGATGGCCAGCAGTTGCCCATCGATTGAGGAGCTCGACCTATCTGACTG
CTACAACATTACGGACAAGACCATCCAGGTGGTAACGTCTAAGTTGCCCC
GCCTGAAGGCTCTGCACATCAGCGGTTGCAGCCAGCTGACGGAGCACACG
CTGGACGCCATTATCACCAACTGCAGCTGCCTGCAAACGCTGTCAATCTA
TCGATGTCGGAGTATGTACACAGACTTGGAGGAGCGACTATCCGGCGTGA
AGACGTTGCGCAACCTGAACATGGACAATCTGACGAGCATCGACAACGCC
GAGTTTTTCCGCCTGAAAAAGCGACTCGATTACGCAAGCTTTCTAGACCA
T
BO10540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8272-RB | 2133 | CG8272-PB | 1..2067 | 17..2083 | 10335 | 100 | Plus |
| CG8272-RA | 2070 | CG8272-PA | 1..2067 | 17..2083 | 10335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8272-RB | 2804 | CG8272-RB | 102..2168 | 17..2083 | 10335 | 100 | Plus |
| CG8272-RA | 2804 | CG8272-RA | 102..2168 | 17..2083 | 10335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8889855..8891120 | 1331..66 | 6315 | 99.9 | Minus |
| 2R | 25286936 | 2R | 8889040..8889796 | 2083..1327 | 3785 | 100 | Minus |
| 2R | 25286936 | 2R | 8891250..8891300 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:40:29 has no hits.
BO10540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:22 Download gff for
BO10540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 1..2070 | 17..2086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:43 Download gff for
BO10540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 93..2175 | 6..2092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:51 Download gff for
BO10540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 102..2168 | 17..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:22 Download gff for
BO10540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 93..2175 | 6..2092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:59 Download gff for
BO10540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 102..2168 | 17..2085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:59 Download gff for
BO10540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8889037..8889795 | 1328..2085 | 99 | <- | Minus |
| 2R | 8889859..8891118 | 68..1327 | 100 | <- | Minus |
| 2R | 8891250..8891300 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:51 Download gff for
BO10540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4776542..4777300 | 1328..2085 | 99 | <- | Minus |
| arm_2R | 4777364..4778623 | 68..1327 | 100 | <- | Minus |
| arm_2R | 4778755..4778805 | 17..67 | 100 | | Minus |
BO10540.pep Sequence
Translation from 16 to 2101
> BO10540.pep
MSGLEYGLHRYDDLPLEIVLKIFSYLGYSDLQAAGSTCQRWHAALDQAEF
NQRTRVCFSKVVLSDQLSPGVDLMRCERRFQHFLFEDVTLGQVKELMRFM
GRTAQSLALDNVDLNDKQFYGMLGVLPHLHSLSLKRCLPLFMSGSFLDSY
NNSCPDLNDLASNLAGIKELTLCENQYLTDAILMRLTSFMPSLEAINMSG
CHIAFHNAIHRRFYPATSSSDHVLPSESVLTFKFILTILNLQRRTLRVLN
FSHTLIGQALLALCDLNLQLQRLYLAGCRQLNCTTILNFLATQPQLCALD
LSATMCVNDENLAALVQTNPQLEHLKVNGCLSITNAGAIHLAKLKCLKSL
DISNCDNLTSSGIIEGIASEENPVIQELNVSYLQICEECIKAIASNLRCL
RSLHLNHCVNGATDEAIQSVIGQLRWLRELSLEHCSGLTDAALTGINISK
LEMSRKQSGSQVSSMDNFYPPYSNTLAERDSLAGSLQSIKISLRSKAEDE
IVRDARRKQAMLAAYEMNLIREDDFEGHNIQQLRGLRSLNLRGCNKISDV
SLKYGLKHIELRRLMLSNCQQISLLGMEAMASSCPSIEELDLSDCYNITD
KTIQVVTSKLPRLKALHISGCSQLTEHTLDAIITNCSCLQTLSIYRCRSM
YTDLEERLSGVKTLRNLNMDNLTSIDNAEFFRLKKRLDYASFLDH
BO10540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8272-PB | 710 | CG8272-PB | 1..692 | 1..692 | 3537 | 99.7 | Plus |
| CG8272-PA | 689 | CG8272-PA | 1..689 | 1..689 | 3534 | 100 | Plus |
| CG12402-PA | 632 | CG12402-PA | 78..596 | 14..635 | 253 | 22.4 | Plus |
| CG12402-PB | 639 | CG12402-PB | 78..596 | 14..635 | 253 | 22.4 | Plus |
| CG12402-PC | 671 | CG12402-PC | 78..596 | 14..635 | 253 | 22.4 | Plus |
| CG12402-PA | 632 | CG12402-PA | 187..585 | 294..675 | 165 | 21.9 | Plus |
| CG12402-PB | 639 | CG12402-PB | 187..585 | 294..675 | 165 | 21.9 | Plus |
